Index Catalog // ScholarsArchive@OSU

A regional real-time forecast of marine boundary layers during VOCALS-REx

Creator:: Wang, S., O'Neill, L. W., Jiang, Q., de Szoeke, Simon P., Hong, X., Jin, H., Thompson, W. T., and Zheng, X.
Abstract:: This paper presents an evaluation and validation of the Naval Research Laboratory's COAMPS® real-time forecasts during the VOCALS-REx over the area off the west coast of Chile/Peru in the Southeast Pacific during October and November 2008. The analyses focus on the marine boundary layer (MBL) structure. These forecasts are compared...
Resource Type:: Article
Full Text:: S. Wang1, L. W. O’Neill2, Q. Jiang1, S. P. de Szoeke3, X. Hong1, H. Jin1, W. T. Thompson1, and X

Comparative Composition, Diversity and Trophic Ecology of Sediment Macrofauna at Vents, Seeps and Organic Falls

Creator:: Bernardino, Angelo F., Levin, Lisa A., Thurber, Andrew R., and Smith, Craig R.
Abstract:: Sediments associated with hydrothermal venting, methane seepage and large organic falls such as whale, wood and plant detritus create deep-sea networks of soft-sediment habitats fueled, at least in part, by the oxidation of reduced chemicals. Biological studies at deep-sea vents, seeps and organic falls have looked at macrofaunal taxa, but...
Resource Type:: Article
Full Text:: de Fuca 2406–2411 mat, clam bed, hot mud, inactive [27] Papua New Guinea (HV) W. Pacific Manus

Calcium carbonate production response to future ocean warming and acidification

Creator:: Pinsonneault, A. J., Matthews, H. D., Galbraith, E. D., and Schmittner, A.
Abstract:: Anthropogenic carbon dioxide (CO₂) emissions are acidifying the ocean, affecting calcification rates in pelagic organisms, and thereby modifying the oceanic carbon and alkalinity cycles. However, the responses of pelagic calcifying organisms to acidification vary widely between species, contributing uncertainty to predictions of atmospheric CO₂ and the resulting climate change. At...
Resource Type:: Article
Full Text:: , Concordia University, 1455 de Maisonneuve Blvd W., H3G 1M8, Montreal, QC, Canada 2Department of Geography

Loss of Abdominal Muscle in Pitx2 Mutants Associated with Altered Axial Specification of Lateral Plate Mesoderm

Creator:: Eng, Diana, Ma, Hsiao-Yen, Xu, Jun, Shih, Hung-Ping, Gross, Michael K., and Kiouss, Chrissa
Abstract:: Correction 17 Oct 2012: Eng D, Ma HY, Xu J, Shih HP, Gross MK, et al. (2012) Correction: Loss of Abdominal Muscle in Pitx2 Mutants Associated with Altered Axial Specification of Lateral Plate Mesoderm. PLOS ONE 7(10): 10.1371/annotation/c980d5a1-1899-4d30-af7b-573d4049cf4b
Resource Type:: Article

Ultraviolet Radiation Influences Perch Selection by a Neotropical Poison-Dart Frog

Creator:: Kats, Lee B., Bucciarelli, Gary M., Schlais, David E., Blaustein, Andrew R., and Han, Barbara A.
Abstract:: Ambient ultraviolet-B radiation can harm amphibian eggs, larvae and adults. However, some amphibians avoid UV-B radiation when given the opportunity. The strawberry poison dart frog, Oophaga pumilio, is diurnal and males vocalize throughout the day in light gaps under forest canopies that expose them to solar radiation. Previous studies have...
Resource Type:: Article
Full Text:: perches (W = 992, p = 0.69), height of perches (W = 963, p = 0.87), or UV-B reaching the frogs (W = 1013

Sustained-input switches for transcription factors and microRNAs are central building blocks of eukaryotic gene circuits

Creator:: Megraw, Molly, Mukherjee, Sayan, and Ohler, Uwe
Abstract:: WaRSwap is a randomization algorithm that for the first time provides a practical network motif discovery method for large multi-layer networks, for example those that include transcription factors, microRNAs, and non-regulatory protein coding genes. The algorithm is applicable to systems with tens of thousands of genes, while accounting for critical...
Resource Type:: Article

Evolutionary Biology for the 21st Century

Creator:: Losos, Jonathan B., Arnold, Stevan J., Bejerano, Gill, Brodie, E. D. III, Hibbett, David, Hoekstra, Hopi E., Mindell, David P., Monteiro, Antonia, Moritz, Craig, Orr, H. Allen, Petrov, Dmitri A., Renner, Susanne S., Ricklefs, Robert E., Soltis, Pamela S., and Turner, Thomas L.
Abstract:: We live in an exciting time for biology. Technological advances have made data collection easier and cheaper than we could ever have imagined just 10 years ago. We can now synthesize and analyze large data sets containing genomes, transcriptomes, proteomes, and multivariate phenotypes. At the same time, society's need for...
Resource Type:: Article
Full Text:: , P. Parks, K. Roy, S. Smith, J. Trimble, and A. Weirman for help procuring images. Glossary

The Genome of Tolypocladium inflatum: Evolution, Organization, and Expression of the Cyclosporin Biosynthetic Gene Cluster

Creator:: Bushley, Kathryn E., Raja, Rajani, Jaiswal, Pankaj, Cumbie, Jason S., Nonogaki, Mariko, Boyd, Alexander E., Owensby, C. Alisha, Knaus, Brian J., Elser, Justin, Miller, Daniel, Di, Yanming, McPhail, Kerry L., and Spatafora, Joseph W.
Abstract:: The ascomycete fungus Tolypocladium inflatum, a pathogen of beetle larvae, is best known as the producer of the immunosuppressant drug cyclosporin. The draft genome of T. inflatum strain NRRL 8044 (ATCC 34921), the isolate from which cyclosporin was first isolated, is presented along with comparative analyses of the biosynthesis of...
Resource Type:: Article
Full Text:: Owensby1, Brian J. Knaus1, Justin Elser1, Daniel Miller1, Yanming Di4, Kerry L. McPhail2, Joseph W

The Genome and Development-Dependent Transcriptomes of Pyronema confluens: A Window into Fungal Evolution

Creator:: Traeger, Stefanie, Altegoer, Florian, Freitag, Michael, Gabaldon, Toni, Kempken, Frank, Kumar, Abhishek, Marcet-Houben, Marina, Poggeler, Stefanie, Stajich, Jason E., and Nowrousian, Minou
Abstract:: Fungi are a large group of eukaryotes found in nearly all ecosystems. More than 250 fungal genomes have already been sequenced, greatly improving our understanding of fungal evolution, physiology, and development. However, for the Pezizomycetes, an early-diverging lineage of filamentous ascomycetes, there is so far only one genome available, namely...
Resource Type:: Article

A potential implicit particle method for high-dimensional systems

Creator:: Weir, B., Miller, R. N., and Spitz, Y. H.
Abstract:: This paper presents a particle method designed for high-dimensional state estimation. Instead of weighing random forecasts by their distance to given observations, the method samples an ensemble of particles around an optimal solution based on the observations (i.e., it is implicit). It differs from other implicit methods because it includes...
Resource Type:: Article
Full Text:: −1l exp(−ψl). 6. Give the sample the weight w(i) = β−1l exp ( −ϕ (i) l ) γ−1l exp ( −ψ (i) l

ScholarsArchive@OSU

A regional real-time forecast of marine boundary layers during VOCALS-REx

Comparative Composition, Diversity and Trophic Ecology of Sediment Macrofauna at Vents, Seeps and Organic Falls

Calcium carbonate production response to future ocean warming and acidification

Loss of Abdominal Muscle in Pitx2 Mutants Associated with Altered Axial Specification of Lateral Plate Mesoderm

Ultraviolet Radiation Influences Perch Selection by a Neotropical Poison-Dart Frog

Sustained-input switches for transcription factors and microRNAs are central building blocks of eukaryotic gene circuits

Evolutionary Biology for the 21st Century

The Genome of Tolypocladium inflatum: Evolution, Organization, and Expression of the Cyclosporin Biosynthetic Gene Cluster

The Genome and Development-Dependent Transcriptomes of Pyronema confluens: A Window into Fungal Evolution

A potential implicit particle method for high-dimensional systems

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