Index Catalog // ScholarsArchive@OSU

Uncertainty analysis: an evaluation metric for synthesis science

Creator:: Harmon, Mark E., Fasth, Becky, Halpern, Charles B., and Lutz, James A.
Abstract:: The methods for conducting reductionist ecological science are well known and widely used. In contrast, those used in the synthesis of ecological science (i.e., synthesis science) are still being developed, vary widely, and often lack the rigor of reductionist approaches. This is unfortunate because the synthesis of ecological parts into...
Resource Type:: Article
Full Text:: ,1 CHARLES B. HALPERN,2 AND JAMES A. LUTZ3 1Department of Forest Ecosystems and Society, Oregon

Trumpet of the Spirit, Bass of Faith: Jazz as a Cold War Spiritual Weapon

Creator:: Stoneburner, B. Lauren
Abstract:: This paper explores Jazz music during the Cold War. During the Cold War the U.S. went through a process of becoming more explicitly religious, identifying specifically a Judeo-Christian country. Particularly through foreign policy, the separation between church and state became less and less clear to the point where it seemed...
Resource Type:: Research Paper
Full Text:: Spiritual Weapon1 B. Lauren Stoneburner HST466

Eocene and not Cretaceous origin of spider wasps: Fossil evidence from amber

Creator:: Rodriguez, Juanita, Waichert, Cecilia, von Dohlen, Carol D., Poinar, George, Jr., and Pitts, James P.
Abstract:: Spider wasps had long been proposed to originate in the mid-Cretaceous based on the Burmese amber fossil Bryopompilus interfector Engel and Grimaldi, 2006. We performed a morphological examination of this fossil and determined it does not belong to Pompilidae or any other described hymenopteran family. Instead, we place it in...
Resource Type:: Article
Full Text:: Poinar Jr, and James P. Pitts Acta Palaeontologica Polonica 61 (1), 2016: 89-96 doi:http://dx.doi.org

Genome-Wide Profiling and Analysis of Arabidopsis siRNAs

Creator:: Kasschau, Kristin D., Fahlgren, Noah, Chapman, Elisabeth J., Sullivan, Christopher M., Cumbie, Jason S., Givan, Scott A., and Carrington, James C.
Abstract:: Eukaryotes contain a diversified set of small RNA-guided pathways that control genes, repeated sequences, and viruses at the transcriptional and posttranscriptional levels. Genome-wide profiles and analyses of small RNAs, particularly the large class of 24-nucleotide (nt) short interfering RNAs (siRNAs), were done for wild-type Arabidopsis thaliana and silencing pathway mutants...
Resource Type:: Article
Full Text:: . Sullivan 1,2 , Jason S. Cumbie 1,2 , Scott A. Givan 1,2 , James C. Carrington 1,2* 1 Center for Genome

The ERI-6/7 Helicase Acts at the First Stage of an siRNA Amplification Pathway That Targets Recent Gene Duplications

Creator:: Fischer, Sylvia E. J., Montgomery, Taiowa A., Zhang, Chi, Fahlgren, Noah, Breen, Peter C., Hwang, Alexia, Sullivan, Christopher M., Carrington, James C., and Ruvkun, Gary
Abstract:: Endogenous small interfering RNAs (siRNAs) are a class of naturally occuring regulatory RNAs found in fungi, plants, and animals. Some endogenous siRNAs are required to silence transposons or function in chromosome segregation; however, the specific roles of most endogenous siRNAs are unclear. The helicase gene eri-6/7 was identified in the...
Resource Type:: Article
Full Text:: . Sullivan2, James C. Carrington2, Gary Ruvkun1* 1 Department of Molecular Biology, Massachusetts General

High-Throughput Sequencing of Arabidopsis microRNAs : Evidence for Frequent Birth and Death of MIRNA Genes

Creator:: Fahlgren, Noah, Howell, Miya D., Kasschau, Kristin D., Sullivan, Christopher M., Cumbie, Jason S., Givan, Scott A., Law, Theresa F., Grant, Sarah R., Dangl, Jeffrey L., and Carrington, James C.
Abstract:: In plants, microRNAs (miRNAs) comprise one of two classes of small RNAs that function primarily as negative regulators at the posttranscriptional level. Several MIRNA genes in the plant kingdom are ancient, with conservation extending between angiosperms and the mosses, whereas many others are more recently evolved. Here, we use deep...
Resource Type:: Article
Full Text:: . Law3, Sarah R. Grant3, Jeffery L. Dangl3, James C. Carrington1* 1 Center for Genome Research and

Genetic and Functional Diversification of Small RNA Pathways in Plants

Creator:: Xie, Zhixin, Johansen, Lisa K., Gustafan, Adam M., Kasschau, Kristin D., Lellis, Andrew D., Zilberman, Daniel, Jacobsen, Steven E., and Carrington, James C.
Abstract:: Multicellular eukaryotes produce small RNA molecules (approximately 21–24 nucleotides) of two general types, microRNA (miRNA) and short interfering RNA (siRNA). They collectively function as sequence-specific guides to silence or regulate genes, transposons, and viruses and to modify chromatin and genome structure. Formation or activity of small RNAs requires factors belonging...
Resource Type:: Article
Full Text:: . Kasschau 1 , Andrew D. Lellis 1 , Daniel Zilberman 2 , Steven E. Jacobsen 2,3 , James C. Carrington 1

Near-Real-Time Acoustic Monitoring of Beaked Whales and Other Cetaceans Using a Seaglider (TM)

Creator:: Klinck, Holger, Mellinger, David K., Klinck, Karolin, Bogue, Neil M., Luby, James C., Jump, William A., Shilling, Geoffrey B., Litchendorf, Trina, Wood, Angela S., Schorr, Gregory S., and Baird, Robin W.
Abstract:: Correction 10 Aug 2012: Klinck H, Mellinger DK, Klinck K, Bogue NM, Luby JC, et al. (2012) Correction: Near-Real-Time Acoustic Monitoring of Beaked Whales and Other Cetaceans Using a Seaglider™. PLOS ONE 7(8): 10.1371/annotation/57ad0b82-87c4-472d-b90b-b9c6f84947f8.
Resource Type:: Article
Full Text:: , Neil M. Bogue2, James C. Luby2, William A. Jump2, Geoffrey B. Shilling2, Trina Litchendorf2, Angela S

Evaluation and improvement of the Community Land Model (CLM4) in Oregon forests

Creator:: Hudiburg, T. W., Law, B. E., and Thornton, P. E.
Abstract:: Ecosystem process models are important tools for determining the interactive effects of global change and disturbance on forest carbon dynamics. Here we evaluated and improved terrestrial carbon cycling simulated by the Community Land Model (CLM4), the land model portion of the Community Earth System Model (CESM1.0.4). Our analysis was conducted...
Resource Type:: Article
Full Text:: Evaluation and improvement of the Community Land Model (CLM4) in Oregon forests T. W. Hudiburg1, B. E. Law2

Density Can Be Misleading for Low-Density Species: Benefits of Passive Acoustic Monitoring

Creator:: Rogers, Tracey L., Ciaglia, Michaela B., Klinck, Holger, and Southwell, Colin
Abstract:: Climate-induced changes may be more substantial within the marine environment, where following ecological change is logistically difficult, and typically expensive. As marine animals tend to produce stereotyped, long-range signals, they are ideal for repeatable surveying. In this study we illustrate the potential for calling rates to be used as a...
Resource Type:: Article
Full Text:: Species: Benefits of Passive Acoustic Monitoring Tracey L. Rogers1*, Michaela B. Ciaglia1, Holger Klinck2

ScholarsArchive@OSU

Uncertainty analysis: an evaluation metric for synthesis science

Trumpet of the Spirit, Bass of Faith: Jazz as a Cold War Spiritual Weapon

Eocene and not Cretaceous origin of spider wasps: Fossil evidence from amber

Genome-Wide Profiling and Analysis of Arabidopsis siRNAs

The ERI-6/7 Helicase Acts at the First Stage of an siRNA Amplification Pathway That Targets Recent Gene Duplications

High-Throughput Sequencing of Arabidopsis microRNAs : Evidence for Frequent Birth and Death of MIRNA Genes

Genetic and Functional Diversification of Small RNA Pathways in Plants

Near-Real-Time Acoustic Monitoring of Beaked Whales and Other Cetaceans Using a Seaglider (TM)

Evaluation and improvement of the Community Land Model (CLM4) in Oregon forests

Density Can Be Misleading for Low-Density Species: Benefits of Passive Acoustic Monitoring

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