Index Catalog // ScholarsArchive@OSU

Fish Schooling Data Subset

Creator:: Katz, Yael, Tunstrøm, Kolbjørn, Ioannou, Christos C., Huepe, Cristián, and Couzin, Iain D.
Abstract:: The data is a JSON format file containing the position, velocity, and fish identifier data for 300 golden shiners in a shallow (depth of 4.5 to 5 cm) rectangular water tank (2.1 by 1.2 meters). There are 5000 individual frames (samples of position and velocity) corresponding to video taken at...
Resource Type:: Dataset

Theoretical Prediction of Disrupted Min Oscillation in Flattened Escherichia coli

Creator:: Schulte, Jeff B., Zeto, Rene W., and Roundy, David
Abstract:: The dynamics of the Min-protein system help Escherichia coli regulate the process of cell division by identifying the center of the cell. While this system exhibits robust bipolar oscillations in wild-type cell shapes, recent experiments have shown that when the cells are mechanically deformed into wide, flattened out, irregular shapes,...
Resource Type:: Article
Full Text:: Academy of Sciences 100: 12724– 12728. doi: 10.1073/pnas.2135445100 8. Kerr RA, Levine H, Sejnowski TJ

Planning for Change: Assessing the Potential Role of Marine Protected Areas and Fisheries Management Approaches for Resilience Management in a Changing Ocean

Creator:: Kroeker, Kristy J., Carr, Mark H., Raimondi, Peter T., Caselle, Jennifer E., Washburn, Libe, Palumbi, Stephen R., Barth, John A., Chan, Francis, Menge, Bruce A., Milligan, Kristen, Novak, Mark, and White, J. Wilson
Abstract:: Despite progressive policies and continued advances in ocean management, numerous shifts associated with global changes have been observed in marine ecosystems in recent years, including warming, ocean acidification, and deoxygenation. As global change accelerates, science is needed to inform evidence-based management strategies for continued ecosystem services. Resilience management, in which...
Resource Type:: Article
Full Text:: of the United States of America 107:18,286–18,293, https://doi.org/10.1073/pnas.0906473107. Game

Monomerization of far-red fluorescent proteins

Creator:: Wannier, Timothy M., Gillespie, Sarah K., Hutchins, Nicholas, McIsaac, R. Scott, Wu, Sheng-Yi, Shen, Yi, Campbell, Robert E., Brown, Kevin S., and Mayo, Stephen L.
Abstract:: Anthozoa-class red fluorescent proteins (RFPs) are frequently used as biological markers, with far-red (lambda(em) similar to 600-700 nm) emitting variants sought for whole-animal imaging because biological tissues are more permeable to light in this range. A barrier to the use of naturally occurring RFP variants as molecular markers is that...
Resource Type:: Article
Full Text:: | PNAS | vol. 115 | no. 48 www.pnas.org/cgi/doi/10.1073/pnas.1807449115 both

Cyclosporine Biosynthesis in Tolypocladium inflatum Benefits Fungal Adaptation to the Environment

Creator:: Yang, Xiuqing, Feng, Peng, Yin, Ying, Bushley, Kathryn, Spatafora, Joseph W., and Wang, Chengshu
Abstract:: The cycloundecapeptide cyclosporin A (CsA) was first isolated from the insect-pathogenic fungus Tolypocladium inflatum for its antifungal activity and later developed as an immunosuppressant drug. However, the full biosynthetic mechanism of CsA remains unknown and has puzzled researchers for decades. In this study, the biosynthetic gene cluster is suggested to...
Resource Type:: Article

Connecting Science to Policymakers, Managers, and Citizens

Creator:: Lubchenco, Jane, Menge, Bruce A., Barth, John A., Carr, Mark H., Caselle, Jennifer E., Chan, Francis, Fulton-Bennett, Heather K., Gaines, Steven D., Kroeker, Kristy J., Milligan, Kristen, Palumbi, Steven R., and White, J. Wilson
Abstract:: Twenty years ago, the creation of a new scientific program, the Partnership for Interdisciplinary Studies of Coastal Oceans (PISCO), funded by the Packard Foundation, provided the opportunity to integrate—from the outset—research, monitoring, and outreach to the public, policymakers, and managers. PISCO’s outreach efforts were initially focused primarily on sharing scientific...
Resource Type:: Article
Full Text:: –8,091, https://doi.org/ 10.1073/ pnas.1231332100. Carr, M.H., J.W. White, E. Saarman, J. Lubchenco, K

Thermal Anomalies Detect Critical Global Land Surface Changes

Creator:: Mildrexler, D. J., Zhao, M., Cohen, W. B., Running, S. W., Song, X. P., and Jones, M. O.
Abstract:: Measurements that link surface conditions and climate can provide critical information on important biospheric changes occurring in the Earth system. As the direct driving force of energy and water fluxes at the surface-atmosphere interface, land surface temperature (LST) provides information on physical processes of land-cover change and energy-balance changes that...
Resource Type:: Article

Integrating oceans into climate policy : any green new deal needs a splash of blue

Creator:: Dundas, Steven J., Levine, Arielle S., Lewison, Rebecca L., Doerr, Angee N., White, Crow, Galloway, Aaron W. E., Garza, Corey, Hazen, Elliott L., Padilla‐Gamiño, Jacqueline, Samhouri, Jameal F., Spalding, Ana, Stier, Adrian, and White, J. Wilson
Abstract:: Recent warnings from scientists suggest there is limited time to enact policies to avert wide‐ranging ecological and social damage from climate change. In the United States, discussions about comprehensive national policies to avert climate change have begun, with “Green New Deal” proposals and climate plans put forth by members of...
Resource Type:: Article
Full Text:: National Academy of Sciences, 115(20), 5295–5300. https://doi.org/10.1073/ pnas.1801692115 Froehlich, H. E

A quantitative wildfire risk assessment using a modular approach of geostatistical clustering and regionally distinct valuations of assets—A case study in Oregon

Creator:: Schmidt, Andres, Leavell, Daniel, Punches, John, Rocha Ibarra, Marco A., Kagan, James S., Creutzburg, Megan, McCune, Myrica, Salwasser, Janine, Walter, Cara, and Berger, Carrie
Abstract:: The intensity and scale of wildfires has increased throughout the Pacific Northwest in recent decades, especially within the last decade, destroying vast amounts of valuable resources and assets. This trend is predicted to remain or even magnify due climate change, growing population, increased housing density. Furthermore, the associated stress of...
Resource Type:: Article

Particle shape impacts export and fate in the ocean through interactions with the globally abundant appendicularian Oikopleura dioica

Creator:: Conley, Keats R. and Sutherland, Kelly R.
Abstract:: Marine microbes exhibit highly varied, often non-spherical shapes that have functional significance for essential processes, including nutrient acquisition and sinking rates. There is a surprising absence of data, however, on how cell shape affects grazing, which is crucial for predicting the fate of oceanic carbon. We used synthetic spherical and...
Resource Type:: Article
Full Text:: /10.1073/pnas.1003599107 PMID: 20696887 18. Fernández D, López-Urrutia Á, Fernández A, Acuña JL

ScholarsArchive@OSU

Fish Schooling Data Subset

Theoretical Prediction of Disrupted Min Oscillation in Flattened Escherichia coli

Planning for Change: Assessing the Potential Role of Marine Protected Areas and Fisheries Management Approaches for Resilience Management in a Changing Ocean

Monomerization of far-red fluorescent proteins

Cyclosporine Biosynthesis in Tolypocladium inflatum Benefits Fungal Adaptation to the Environment

Connecting Science to Policymakers, Managers, and Citizens

Thermal Anomalies Detect Critical Global Land Surface Changes

Integrating oceans into climate policy : any green new deal needs a splash of blue

A quantitative wildfire risk assessment using a modular approach of geostatistical clustering and regionally distinct valuations of assets—A case study in Oregon

Particle shape impacts export and fate in the ocean through interactions with the globally abundant appendicularian Oikopleura dioica

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