Index Catalog // ScholarsArchive@OSU

Automated and Accurate Estimation of Gene Family Abundance from Shotgun Metagenomes

Creator:: Nayfach, Stephen, Bradley, Patrick H., Wyman, Stacia K., Laurent, Timothy J., Williams, Alex, Eisen, Jonathan A., Pollard, Katherine S., and Sharpton, Thomas J.
Abstract:: Shotgun metagenomic DNA sequencing is a widely applicable tool for characterizing the functions that are encoded by microbial communities. Several bioinformatic tools can be used to functionally annotate metagenomes, allowing researchers to draw inferences about the functional potential of the community and to identify putative functional biomarkers. However, little is...
Resource Type:: Article
Full Text:: Metagenomes Nayfach, S., Bradley, P. H., Wyman, S. K., Laurent, T. J., Williams, A., Eisen, J. A

Hinkle Creek Benthic Invertebrate Dataset

Creator:: Gerth, William J., Li, Judith L., Van Driesche, Richard, Sobota, Janel, Murphy, Christina A., Ganio, Lisa, and Skaugset, Arne
Abstract:: This dataset contains records of identified benthic and aquatic emergent invertebrates from pre-timber harvest, post-timber harvest, and reference (no harvest) collection sites in the Hinkle Creek watershed. A variety of fish-bearing tributaries, fishless tributaries, and mainstem creek sites were sampled. Benthic invertebrates were collected using Serber nets and emergent adults...
Resource Type:: Dataset

Experiments with Seasonal Forecasts of ocean conditions for the Northern region of the California Current upwelling system

Creator:: Siedlecki, Samantha A., Kaplan, Isaac C., Hermann, Albert J., Nguyen, Thanh Tam, Bond, Nicholas A., Newton, Jan A., Williams, Gregory D., Peterson, William T., Alin, Simone R., and Feely, Richard A.
Abstract:: Resource managers at the state, federal, and tribal levels make decisions on a weekly to quarterly basis, and fishers operate on a similar timeframe. To determine the potential of a support tool for these efforts, a seasonal forecast system is experimented with here. JISAO’s Seasonal Coastal Ocean Prediction of the...
Resource Type:: Article

The genome of the water strider Gerris buenoi reveals expansions of gene repertoires associated with adaptations to life on the water

Creator:: Armisen, David, Rajakumar, Rajendhran, Friedrich, Markus, Benoit, Joshua B., Robertson, Hugh M., Panfilio, Kristen A., Ahn, Seung-Joon, Poelchau, Monica F., Chao, Hsu, Dinh, Huyen, Doddapaneni, Harsha Vardhan, Dugan, Shannon, Gibbs, Richard A., Hughes, Daniel S. T., Han, Yi, Lee, Sandra L., Murali, Shwetha C., Muzny, Donna M., Qu, Jiaxin, Worley, Kim C., Munoz-Torres, Monica, Abouheif, Ehab, Bonneton, Francois, Chen, Travis, Chiang, Li-Mei, Childers, Christopher P., Cridge, Andrew G., Crumiere, Antonin J. J., Decaras, Amelie, Didion, Elise M., Duncan, Elizabeth J., Elpidina, Elena N., Fave, Marie-Julie, Finet, Cedric, Jacobs, Chris G. C., Jarvela, Alys M. Cheatle, Jennings, Emily C., Jones, Jeffery W., Lesoway, Maryna P., Lovegrove, Mackenzie R., Martynov, Alexander, Oppert, Brenda, Lillico-Ouachour, Angelica, Rajakumar, Arjuna, Refki, Peter Nagui, Rosendale, Andrew J., Santos, Maria Emilia, Toubiana, William, van der Zee, Maurijn, Jentzsch, Iris M. Vargas, Lowman, Aidamalia Vargas, Viala, Severine, Richards, Stephen, and Khila, Abderrahman
Abstract:: Background: Having conquered water surfaces worldwide, the semi-aquatic bugs occupy ponds, streams, lakes, mangroves, and even open oceans. The diversity of this group has inspired a range of scientific studies from ecology and evolution to developmental genetics and hydrodynamics of fluid locomotion. However, the lack of a representative water strider...
Resource Type:: Article
Full Text:: Dugan11, Richard A. Gibbs11, Daniel S. T. Hughes11, Yi Han11, Sandra L. Lee11, Shwetha C. Murali12, Donna

ScholarsArchive@OSU

Automated and Accurate Estimation of Gene Family Abundance from Shotgun Metagenomes

Hinkle Creek Benthic Invertebrate Dataset

Experiments with Seasonal Forecasts of ocean conditions for the Northern region of the California Current upwelling system

The genome of the water strider Gerris buenoi reveals expansions of gene repertoires associated with adaptations to life on the water

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