Index Catalog // ScholarsArchive@OSU

Flux Balance Analysis with Objective Function Defined by Proteomics Data-Metabolism of Mycobacterium tuberculosis Exposed to Mefloquine

Creator:: Montezano, Daniel, Meek, Laura, Gupta, Rashmi, Bermudez, Luiz E., and Bermudez, José C. M.
Abstract:: We present a study of the metabolism of the Mycobacterium tuberculosis after exposure to antibiotics using proteomics data and flux balance analysis (FBA). The use of FBA to study prokaryotic organisms is well-established and allows insights into the metabolic pathways chosen by the organisms under different environmental conditions. To apply...
Resource Type:: Article
Full Text:: Exposed to Mefloquine Montezano, D., Meek, L., Gupta, R., Bermudez, L. E., & Bermudez, J. C. (2015

Carnivore conservation needs evidence-based livestock protection

Creator:: van Eeden, Lily M., Eklund, Ann, Miller, Jennifer R. B., Lopez-Bao, Jose Vicente, Chapron, Guillaume, Cejtin, Mikael R., Crowther, Mathew S., Dickman, Christopher R., Frank, Jens, Krofel, Miha, Macdonald, David W., McManus, Jeannine, Meyer, Tara K., Middleton, Arthur D., Newsome, Thomas M., Ripple, William J., Ritchie, Euan G., Schmitz, Oswald J., Stoner, Kelly J., Tourani, Mahdieh, and Treves, Adrian
Abstract:: Carnivore predation on livestock often leads people to retaliate. Persecution by humans has contributed strongly to global endangerment of carnivores. Preventing livestock losses would help to achieve three goals common to many human societies: preserve nature, protect animal welfare, and safeguard human livelihoods. Between 2016 and 2018, four independent reviews...
Resource Type:: Article
Full Text:: EedenID 1☯*, Ann Eklund2☯*, Jennifer R. B. Miller3,4☯*, José Vicente López- Bao5, Guillaume Chapron2

Fin whale movements in the Gulf of California, Mexico, from satellite telemetry

Creator:: Jimenez Lopez, M. Esther, Palacios, Daniel M., Jaramillo Legorreta, Armando, Urban R, Jorge, and Mate, Bruce R.
Abstract:: Fin whales (Balaenoptera physalus) have a global distribution, but the population inhabiting the Gulf of California (GoC) is thought to be geographically and genetically isolated. However, their distribution and movements are poorly known. The goal of this study was to describe fin whale movements for the first time from 11...
Resource Type:: Article
Full Text:: Legorreta3, Jorge Urbán R.1, Bruce R. Mate2 1 Programa de Investigación de Mamı́feros Marinos

Modeling hop kilning with respect to energy consumption and drying kinetics

Creator:: Thomas, Matthew W.
Abstract:: Currently, little work has been performed studying energy consumption in hop kilning. This thesis explores drying with an alternative drying schedule that extends the initially elevated drying temperature currently used by growers and examines its impact on drying time and energy use. Extending the time of the initially elevated drying...
Resource Type:: Masters Thesis
Full Text:: : _____________________________________________________ Brian M. Fronk Karl R

Finding Our Way through Phenotypes

Creator:: Deans, Andrew R., Lewis, Suzanna E., Huala, Eva, Anzaldo, Salvatore S., Ashburner, Michael, Balhoff, James P., Blackburn, David C., Blake, Judith A., Burleigh, J. Gordon, Chanet, Bruno, Cooper, Lauren D., Courtot, Mélanie, Csösz, Sándor, Cul, Hong, Dahdul, Wasila, Das, Sandip, Dececchi, T. Alexander, Dettal, Agnes, Diogo, Rui, Druzinsky, Robert E., Dumontier, Michel, Franz, Nico M., Friedrich, Frank, Gkoutos, George V., Haendel, Melissa, Harmon, Luke J., Hayamizu, Terry F., He, Yongqun, Hines, Heather M., Ibrahim, Nizar, Jackson, Laura M., Jaiswal, Pankaj, James-Zorn, Christina, Köhler, Sebastian, Lecointre, Guillaume, Lapp, Hilmar, Lawrence, Carolyn J., Le Novère, Nicolas, Lundberg, John G., Macklin, James, Mast, Austin R., Midford, Peter E., Mikó, István, Mungall, Christopher J., Oellrich, Anika, Osumi-Sutherland, David, Parkinson, Helen, Ramírez, Martín J., Richter, Stefan, Robinson, Peter N., Ruttenberg, Alan, Schulz, Katja S., Segerdell, Erik, Seltmann, Katja C., Sharkey, Michael J., Smith, Aaron D., Smith, Barry, Specht, Chelsea D., Squires, R. Burke, Thacker, Robert W., Thessen, Anne, Fernandez-Triana, Jose, Vihinen, Mauno, Vize, Peter D., Vogt, Lars, Wall, Christine E., Walls, Ramona L., Westerfeld, Monte, Wharton, Robert A., Wirkner, Christian S., Woolley, James B., Yoder, Matthew J., Zorn, Aaron M., and Mabee, Paula
Abstract:: Despite a large and multifaceted effort to understand the vast landscape of phenotypic data, their current form inhibits productive data analysis. The lack of a community-wide, consensus-based, human- and machine-interpretable language for describing phenotypes and their genomic and environmental contexts is perhaps the most pressing scientific bottleneck to integration across...
Resource Type:: Article
Full Text:: through Phenotypes Deans, A. R., Lewis, S. E., Huala, E., Anzaldo, S. S., Ashburner, M., et al. (2015

Modeling the Financial Potential of Silvopasture Agroforestry in Eastern North Carolina and Northeastern Oregon

Creator:: Bruck, Sonia R., Bishaw, Badege, Cushing, Tamara L., and Cubbage, Frederick W.
Abstract:: Silvopasture is the planned and managed agroecosystem in which forage, livestock, and woody perennials are integrated "either simultaneously or sequentially on the same parcel of land." Silvopasture can help mitigate anthropogenic climate change through carbon sequestration in perennial vegetation. We examined silvopasture, forest, and pasture systems in eastern North Carolina...
Resource Type:: Article
Full Text:: . Affiliations: Sonia R. Bruck (sonia.bruck@oregonstate.edu) and Badege Bishaw (badege.bishaw@oregonstate.edu

Biodiversity and ecology of lichens of Katmai and Lake Clark National Parks and Preserves, Alaska

Creator:: McCune, B., Arup, U., Breuss, O., Di Meglio, E., Di Meglio, J., Esslinger, T. L., Magain, N., Miadlikowska, J., Miller, A. E., Muggia, L., Nelson, P. R., Rosentreter, R., Schultz, M., Sheard, J. W., Tonsberg, T., and Walton, J.
Abstract:: We inventoried lichens in Lake Clark (LACL) and Katmai (KATM) National Parks and Preserves. We assembled the known information on lichens in these parks by combining field, herbarium, and literature studies. Our results provide baseline data on lichen occurrence that may be used in resource condition assessments, vulnerability assessments, long-term...
Resource Type:: Article
Full Text:: , Miadlikowska J, Miller AE, Muggia L, Nelson PR, Rosentreter R, Schultz M, Sheard JW, Tønsberg T, Walton J

The political biogeography of migratory marine predators

Creator:: Harrison, Autumn-Lynn, Costa, Daniel P., Winship, Arliss J., Benson, Scott R., Bograd, Steven J., Antolos, Michelle, Carlisle, Aaron B., Dewar, Heidi, Dutton, Peter H., Jorgensen, Salvador J., Kohin, Suzanne, Mate, Bruce R., Robinson, Patrick W., Schaefer, Kurt M., Shaffer, Scott A., Shillinger, George L., Simmons, Samantha E., Weng, Kevin C., Gjerde, Kristina M., and Block, Barbara A.
Abstract:: During their migrations, marine predators experience varying levels of protection and face many threats as they travel through multiple countries' jurisdictions and across ocean basins. Some populations are declining rapidly. Contributing to such declines is a failure of some international agreements to ensure effective cooperation by the stakeholders responsible for...
Resource Type:: Article
Full Text:: & Wildlife, Newport, OR, USA. 14Inter-American Tropical Tuna Commission, La Jolla, CA, USA. 15San Jose State

Identification of Chemical Inhibitors of β-Catenin-Driven Liver Tumorigenesis in Zebrafish

Creator:: Evason, Kimberley J., Francisco, Macrina T., Juric, Vladislava, Balakrishnan, Sanjeev, del Pilar Lopez Pazmino, Maria, Gordan, John D., Kakar, Sanjay, Spitsbergen, Jan, Goga, Andrei, and Stainier, Didier Y. R.
Abstract:: Hepatocellular carcinoma (HCC) is one of the most lethal human cancers. The search for targeted treatments has been hampered by the lack of relevant animal models for the genetically diverse subsets of HCC, including the 20-40% of HCCs that are defined by activating mutations in the gene encoding β-catenin. To...
Resource Type:: Article
Full Text:: , Andrei Goga3,5*, Didier Y. R. Stainier2*¤ 1 Department of Pathology, University of California, San

Designing a Project to Determine Optimal Placement and Orientation of Artificial Nest Boxes to Support Barn Owls within the Willamette Valley

Creator:: Parker, Kellan E.
Abstract:: Literature-based review on designing an experimental project regarding placement and orientation of artificial nest boxes related to successful nest box adoption and chick survival in Barn owls within the Willamette Valley.
Resource Type:: Presentation and Video
Full Text:: /000164510x516164. 3. Gehlbach , Frederick R. “A Symposium On Using Next Boxes To Study Raptors: Do The Boxes

ScholarsArchive@OSU

Flux Balance Analysis with Objective Function Defined by Proteomics Data-Metabolism of Mycobacterium tuberculosis Exposed to Mefloquine

Carnivore conservation needs evidence-based livestock protection

Fin whale movements in the Gulf of California, Mexico, from satellite telemetry

Modeling hop kilning with respect to energy consumption and drying kinetics

Finding Our Way through Phenotypes

Modeling the Financial Potential of Silvopasture Agroforestry in Eastern North Carolina and Northeastern Oregon

Biodiversity and ecology of lichens of Katmai and Lake Clark National Parks and Preserves, Alaska

The political biogeography of migratory marine predators

Identification of Chemical Inhibitors of β-Catenin-Driven Liver Tumorigenesis in Zebrafish

Designing a Project to Determine Optimal Placement and Orientation of Artificial Nest Boxes to Support Barn Owls within the Willamette Valley

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