Index Catalog // ScholarsArchive@OSU

Finding Our Way through Phenotypes

Creator:: Deans, Andrew R., Lewis, Suzanna E., Huala, Eva, Anzaldo, Salvatore S., Ashburner, Michael, Balhoff, James P., Blackburn, David C., Blake, Judith A., Burleigh, J. Gordon, Chanet, Bruno, Cooper, Lauren D., Courtot, Mélanie, Csösz, Sándor, Cul, Hong, Dahdul, Wasila, Das, Sandip, Dececchi, T. Alexander, Dettal, Agnes, Diogo, Rui, Druzinsky, Robert E., Dumontier, Michel, Franz, Nico M., Friedrich, Frank, Gkoutos, George V., Haendel, Melissa, Harmon, Luke J., Hayamizu, Terry F., He, Yongqun, Hines, Heather M., Ibrahim, Nizar, Jackson, Laura M., Jaiswal, Pankaj, James-Zorn, Christina, Köhler, Sebastian, Lecointre, Guillaume, Lapp, Hilmar, Lawrence, Carolyn J., Le Novère, Nicolas, Lundberg, John G., Macklin, James, Mast, Austin R., Midford, Peter E., Mikó, István, Mungall, Christopher J., Oellrich, Anika, Osumi-Sutherland, David, Parkinson, Helen, Ramírez, Martín J., Richter, Stefan, Robinson, Peter N., Ruttenberg, Alan, Schulz, Katja S., Segerdell, Erik, Seltmann, Katja C., Sharkey, Michael J., Smith, Aaron D., Smith, Barry, Specht, Chelsea D., Squires, R. Burke, Thacker, Robert W., Thessen, Anne, Fernandez-Triana, Jose, Vihinen, Mauno, Vize, Peter D., Vogt, Lars, Wall, Christine E., Walls, Ramona L., Westerfeld, Monte, Wharton, Robert A., Wirkner, Christian S., Woolley, James B., Yoder, Matthew J., Zorn, Aaron M., and Mabee, Paula
Abstract:: Despite a large and multifaceted effort to understand the vast landscape of phenotypic data, their current form inhibits productive data analysis. The lack of a community-wide, consensus-based, human- and machine-interpretable language for describing phenotypes and their genomic and environmental contexts is perhaps the most pressing scientific bottleneck to integration across...
Resource Type:: Article
Full Text:: Osumi- Sutherland36, Helen Parkinson36, Martı́n J. Ramı́rez37, Stefan Richter38, Peter N. Robinson39

The Evolution of Software Entropy in Open Source projects: An Empirical Study

Creator:: Mannan, Umme Ayda
Abstract:: Software entropy impacts the overall quality of software systems. High entropy hinders developers from understanding the purpose of a piece of code and can cause developers to make sub-optimal changes and introduce bugs. Researchers have used entropy scores to measure the naturalness of code. However, thus far, no one has...
Resource Type:: Technical Report
Full Text:: [8] 𝐻 (𝑋 ), which is calculated using the following formula: 𝐻 (𝑋 ) = 𝑛∑ 𝑖=1 𝑃 (𝑥𝑖 ) log2

Late Cenozoic Foreland-to-Hinterland Low-Temperature Exhumation History of the Kashmir Himalaya

Creator:: Gavillot, Yann, Meigs, Andrew J., Sousa, Francis J., Stockli, Daniel, Yule, Doug, and Malik, Manzoor
Abstract:: New apatite and zircon (U-Th)/He cooling ages quantify late Cenozoic exhumation patterns associated with fault activity across the Kashmir Himalaya. Apatite (U-Th)/He (AHe) cooling ages of detrital grains from the Sub-Himalayan foreland sediments indicate significant resetting. AHe data and thermal modeling reveal cooling and exhumation initiated by 4Ma at the...
Resource Type:: Article
Full Text:: at ~22–20 Ma for the Main Central thrust (MCT; Metcalfe, 1993; DeCelles et al., 1998) and after ~11

Developing and interpreting aqueous functional assays for comparative property-activity relationships of different nanoparticles

Creator:: Kidd, Justin M., Hanigan, David, Truong, Lisa, Hristovski, Kiril, Tanguay, Robert, and Westerhoff, Paul
Abstract:: It is difficult to relate intrinsic nanomaterial properties to their functional behavior in the environment. Unlike frameworks for dissolved organic chemicals, there are few frameworks comparing multiple and inter-related properties of engineered nanomaterials (ENMs) to their fate, exposure, and hazard in environmental systems. We developed and evaluated reproducibility and inter-correlation...
Resource Type:: Article
Full Text:: c t a r t i c l e i n f o Article history: Received 11 November 2017 Received in revised form 8

Modeling hop kilning with respect to energy consumption and drying kinetics

Creator:: Thomas, Matthew W.
Abstract:: Currently, little work has been performed studying energy consumption in hop kilning. This thesis explores drying with an alternative drying schedule that extends the initially elevated drying temperature currently used by growers and examines its impact on drying time and energy use. Extending the time of the initially elevated drying...
Resource Type:: Masters Thesis
Full Text:: graduate school. Finally, I acknowledge the assistance of my colleague Anya Panose, who helped with

Is there a link between wealth and cardiovascular disease risk factors among Hispanic/Latinos? Results from the HCHS/SOL sociocultural ancillary study

Creator:: Lopez-Cevallos, Daniel F., Gonzalez, Patricia, Bethel, Jeffrey W., Castaneda, Sheila F., Isasi, Carmen R., Penedo, Frank J., Ojeda, Lizette, Davis, Sonia M., Chirinos, Diana A., Molina, Kristine M., Teng, Yanping, Bekteshi, Venera, and Gallo, Linda C.
Abstract:: Objective: To examine the relationship between wealth and cardiovascular disease risk factors among Hispanic/Latinos of diverse backgrounds. Design: This cross-sectional study used data from 4971 Hispanic/Latinos, 18-74 years, who participated in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL) baseline exam and the HCHS/SOL Sociocultural Ancillary Study. Three objectively measured...
Resource Type:: Article
Full Text:: American. They could also select More than one group/Other heritage. Due to its small sample size (n=126

Is there a link between wealth and cardiovascular disease risk factors among Hispanic/Latinos? Results from the HCHS/SOL Sociocultural Ancillary Study

Creator:: López-Cevallos, Daniel F.
Abstract:: Objective. To examine the relationship between wealth and cardiovascular disease risk factors among Hispanic/Latinos of diverse backgrounds. Design. This cross-sectional study used data from 4,971 Hispanic/Latinos, 18 to 74 years, who participated in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL) baseline exam and the HCHS/SOL Sociocultural Ancillary Study. Three...
Resource Type:: Article
Full Text:: American. They could also select More than one group/Other heritage. Due to its small sample size (n=126

Exploring biophysical linkages between coastal forestry management practices and aquatic bivalve contaminant exposure

Creator:: Scully-Engelmeyer, Kaegan, Granek, Elise F., Nielsen-Pincus, Max, Lanier, Andy, Rumrill, Steven S., Moran, Patrick, Nilsen, Elena, Hladik, Michelle L., and Pillsbury, Lori
Abstract:: Terrestrial land use activities present cross-ecosystem threats to riverine and marine species and processes. Specifically, pesticide runoff can disrupt hormonal, reproductive, and developmental processes in aquatic organisms, yet non-point source pollution is difficult to trace and quantify. In Oregon, U.S.A., state and federal forestry pesticide regulations, designed to meet regulatory...
Resource Type:: Article
Full Text:: in samples collected in spring 2018 across 38% (n = 77) of all samples. All study watersheds had at

Ocean Acidification Has Multiple Modes of Action on Bivalve Larvae

Creator:: Waldbusser, George G., Hales, Burke, Langdon, Chris J., Haley, Brian A., Schrader, Paul, Brunner, Elizabeth L., Gray, Matthew W., Miller, Cale A., Gimenez, Iria, and Hutchinson, Greg
Abstract:: Ocean acidification (OA) is altering the chemistry of the world’s oceans at rates unparalleled in the past roughly 1 million years. Understanding the impacts of this rapid change in baseline carbonate chemistry on marine organisms needs a precise, mechanistic understanding of physiological responses to carbonate chemistry. Recent experimental work has...
Resource Type:: Article

Spatiotemporal distribution of the anti-diabetic drug, metformin, in the lower Columbia River and its effect on phytoplankton growth

Creator:: Cummings, Brittany M.
Abstract:: Water quality impacts both human and ecosystem health. Many pharmaceuticals and personal care products are considered contaminants of emerging concern (CEC) due to their bioactive properties. Among these, metformin—the most commonly prescribed drug for treatment of type 2 diabetes—has been reported at high concentrations (μg L⁻¹) in stream, lake, and...
Resource Type:: Masters Thesis
Full Text:: 2018). M ic ro s p e c ie s d is tr ib u ti o n pH 14 While the mechanism of

ScholarsArchive@OSU

Finding Our Way through Phenotypes

The Evolution of Software Entropy in Open Source projects: An Empirical Study

Late Cenozoic Foreland-to-Hinterland Low-Temperature Exhumation History of the Kashmir Himalaya

Developing and interpreting aqueous functional assays for comparative property-activity relationships of different nanoparticles

Modeling hop kilning with respect to energy consumption and drying kinetics

Is there a link between wealth and cardiovascular disease risk factors among Hispanic/Latinos? Results from the HCHS/SOL sociocultural ancillary study

Is there a link between wealth and cardiovascular disease risk factors among Hispanic/Latinos? Results from the HCHS/SOL Sociocultural Ancillary Study

Exploring biophysical linkages between coastal forestry management practices and aquatic bivalve contaminant exposure

Ocean Acidification Has Multiple Modes of Action on Bivalve Larvae

Spatiotemporal distribution of the anti-diabetic drug, metformin, in the lower Columbia River and its effect on phytoplankton growth

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