Index Catalog // ScholarsArchive@OSU

Verification of Intraovum Transmission of a Microsporidium of Vertebrates: Pseudoloma neurophilia Infecting the Zebrafish, Danio rerio

Creator:: Sanders, Justin L., Watral, Virginia, Clarkson, Keri, and Kent, Michael L.
Abstract:: Direct transmission from parents to offspring, referred to as vertical transmission, occurs within essentially all major groups of pathogens. Several microsporidia (Phylum Microsporidia) that infect arthropods employ this mode of transmission, and various lines of evidence have suggested this might occur with certain fish microsporidia. The microsporidium, Pseudoloma neurophilia, is...
Resource Type:: Article
Full Text:: , Danio rerio Justin L. Sanders1*, Virginia Watral1, Keri Clarkson2, Michael L. Kent1,2 1 Department of

Unexpected links reflect the noise in networks

Creator:: Yambartsev, Anatoly, Perlin, Michael A., Kovcehgov, Yevgeniy, Shulzhenko, Natalia, Mine, Karina L., Dong, Xiaoxi, and Morgun, Andrey
Abstract:: Gene regulatory networks are commonly used for modeling biological processes and revealing underlying molecular mechanisms. The reconstruction of gene regulatory networks from observational data is a challenging task, especially considering the large number of players (e.g. genes) involved and the small number of biological replicates available for analysis. Herein, we...
Resource Type:: Article
Full Text:: : Anatoly Yambartsev1, Michael A. Perlin2, Yevgeniy Kovchegov3, Natalia Shulzhenko4, Karina L. Mine5

Spec Kit 360: Learning Analytics

Creator:: Perry, Michael R. , Briney, Kristin A., Goben, Abigail, Asher, Andrew, Jones, Kyle M. L. , Robertshaw, M. Brooke, and Salo, Dorothea
Abstract:: This SPEC Kit examines current practices, policies, and ethical issues around libraries and learning analytics. It explore how ARL member institutions are navigating the balance between gathering and managing data in support of learning analytics initiatives and attending to the profession’s ethics commitments. To these ends, it seeks to answer...
Resource Type:: Technical Report
Full Text:: Learning Analytics September 2018 Michael R. Perry, Northwestern University Kristin A. Briney, University

Seasonal distribution and environmental associations among late larval and juvenile rockfish (Sebastes spp.) off Oregon and Washington: new insights based on genetics

Creator:: Johansson, Mattias L., Litz, Marisa N. C., Brodeur, Richard D., Britt, Tristan A., Vanegas, Camilo A., Hyde, John R., and Banks, Michael A.
Abstract:: Cytochrome B sequence data (FASTA format) from the paper “Seasonal distribution and environmental associations among late larval and juvenile rockfish (Sebastes spp.) off Oregon and Washington: new insights based on genetics”. The data was generated from a sample of 2534 unknown, field collected late-larval and juvenile rockfishes from the Pacific...
Resource Type:: Dataset

The Epigenome of Schistosoma mansoni Provides Insight about How Cercariae Poise Transcription until Infection

Creator:: Roquis, David, Lepesant, Julie M. J., Picard, Marion A. L., Freitag, Michael, Parrinello, Hugues, Groth, Marco, Emans, Rémi, Cosseau, Céline, and Grunau, Christoph
Abstract:: Background: Chromatin structure can control gene expression and can define specific transcription states. For example, bivalent methylation of histone H3K4 and H3K27 is linked to poised transcription in vertebrate embryonic stem cells (ESC). It allows them to rapidly engage specific developmental pathways. We reasoned that non-vertebrate metazoans that encounter a...
Resource Type:: Article
Full Text:: David Roquis1,2☯, Julie M. J. Lepesant1,2☯, Marion A. L. Picard1,2☯, Michael Freitag3, Hugues

Epigenetic Control of Effector Gene Expression in the Plant Pathogenic Fungus Leptosphaeria maculans

Creator:: Soyer, Jessica L., El Ghalid, Mennat, Glaser, Nicolas, Ollivier, Bénédicte, Linglin, Juliette, Grandaubert, Jonathan, Balesdent, Marie-Hélène, Connolly, Lanelle R., Freitag, Michael, Rouxel, Thierry, and Fudal, Isabelle
Abstract:: Plant pathogens secrete an arsenal of small secreted proteins (SSPs) acting as effectors that modulate host immunity to facilitate infection. SSP-encoding genes are often located in particular genomic environments and show waves of concerted expression at diverse stages of plant infection. To date, little is known about the regulation of...
Resource Type:: Article

Finding Our Way through Phenotypes

Creator:: Deans, Andrew R., Lewis, Suzanna E., Huala, Eva, Anzaldo, Salvatore S., Ashburner, Michael, Balhoff, James P., Blackburn, David C., Blake, Judith A., Burleigh, J. Gordon, Chanet, Bruno, Cooper, Lauren D., Courtot, Mélanie, Csösz, Sándor, Cul, Hong, Dahdul, Wasila, Das, Sandip, Dececchi, T. Alexander, Dettal, Agnes, Diogo, Rui, Druzinsky, Robert E., Dumontier, Michel, Franz, Nico M., Friedrich, Frank, Gkoutos, George V., Haendel, Melissa, Harmon, Luke J., Hayamizu, Terry F., He, Yongqun, Hines, Heather M., Ibrahim, Nizar, Jackson, Laura M., Jaiswal, Pankaj, James-Zorn, Christina, Köhler, Sebastian, Lecointre, Guillaume, Lapp, Hilmar, Lawrence, Carolyn J., Le Novère, Nicolas, Lundberg, John G., Macklin, James, Mast, Austin R., Midford, Peter E., Mikó, István, Mungall, Christopher J., Oellrich, Anika, Osumi-Sutherland, David, Parkinson, Helen, Ramírez, Martín J., Richter, Stefan, Robinson, Peter N., Ruttenberg, Alan, Schulz, Katja S., Segerdell, Erik, Seltmann, Katja C., Sharkey, Michael J., Smith, Aaron D., Smith, Barry, Specht, Chelsea D., Squires, R. Burke, Thacker, Robert W., Thessen, Anne, Fernandez-Triana, Jose, Vihinen, Mauno, Vize, Peter D., Vogt, Lars, Wall, Christine E., Walls, Ramona L., Westerfeld, Monte, Wharton, Robert A., Wirkner, Christian S., Woolley, James B., Yoder, Matthew J., Zorn, Aaron M., and Mabee, Paula
Abstract:: Despite a large and multifaceted effort to understand the vast landscape of phenotypic data, their current form inhibits productive data analysis. The lack of a community-wide, consensus-based, human- and machine-interpretable language for describing phenotypes and their genomic and environmental contexts is perhaps the most pressing scientific bottleneck to integration across...
Resource Type:: Article
Full Text:: . Lewis2, Eva Huala3,4, Salvatore S. Anzaldo5, Michael Ashburner6, James P. Balhoff7, David C. Blackburn8

ScholarsArchive@OSU

Verification of Intraovum Transmission of a Microsporidium of Vertebrates: Pseudoloma neurophilia Infecting the Zebrafish, Danio rerio

Unexpected links reflect the noise in networks

Spec Kit 360: Learning Analytics

Seasonal distribution and environmental associations among late larval and juvenile rockfish (Sebastes spp.) off Oregon and Washington: new insights based on genetics

The Epigenome of Schistosoma mansoni Provides Insight about How Cercariae Poise Transcription until Infection

Epigenetic Control of Effector Gene Expression in the Plant Pathogenic Fungus Leptosphaeria maculans

Finding Our Way through Phenotypes

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