Index Catalog // ScholarsArchive@OSU

Mathematical and Computational Considerations of a Model of Microbiologically Induced Calcite Precipitation

Creator:: Barry, Zachary T.
Abstract:: In this paper, we discuss two possible modifications to a numerical solution method for a model of microbiologically induced calcite precipitation (MICP). MICP provides a means to seal cracks in the surfaces of geological structures. From a mathematical and computational point of view MICP has very interesting features which make...
Resource Type:: Capstone Project
Full Text:: of a Model of Microbiologically Induced Calcite Precipitation Author Zachary T. Barry Advisor Dr

Use of created snags by cavity-nesting birds across 25 years

Creator:: Barry, Amy M., Hagar, Joan C., and Rivers, James W.
Abstract:: Snags are important habitat features for many forest-dwelling species, so reductions in the number of snags can lead to the loss of biodiversity in forest ecosystems. Intentional snag creation is often used in managed forests to mitigate the long-term declines of naturally created snags, yet information regarding the use of...
Resource Type:: Article
Full Text:: State University, Corvallis, USA. Barry, A. M., J. C. Hagar, and J. W. Rivers. 2017. Long-term dynamics

Sports and Personality: The Effects of Childhood Sports Participation on Healthy Personality Development

Creator:: Sharma, Shrida
Abstract:: Sports, being one of the most popular forms of social play for children (Felfe et al., 2016), can contribute to a child’s development, as they are associated with “physical growth, biological maturation, behavioral development, psychological, and social well-being” (Bailey et al., 2015). The purpose of this study was to attempt...
Resource Type:: Honors College Thesis

Vulnerability and adaptation of Pacific Northwest shellfisheries to ocean acidification

Creator:: Katz, Brian G.
Abstract:: The purpose of this study was to understand the vulnerability and adaptive capacity of shellfish stakeholders in the Pacific Northwest who are adapting to ocean acidification (OA). This study developed a geovisualization tool of existing environmental data for assessing species-specific risk profiles to OA (based on their exposure and sensitivity),...
Resource Type:: Masters Thesis
Full Text:: approved: ______________________________________________________ David J. Wrathall The

Finding Our Way through Phenotypes

Creator:: Deans, Andrew R., Lewis, Suzanna E., Huala, Eva, Anzaldo, Salvatore S., Ashburner, Michael, Balhoff, James P., Blackburn, David C., Blake, Judith A., Burleigh, J. Gordon, Chanet, Bruno, Cooper, Lauren D., Courtot, Mélanie, Csösz, Sándor, Cul, Hong, Dahdul, Wasila, Das, Sandip, Dececchi, T. Alexander, Dettal, Agnes, Diogo, Rui, Druzinsky, Robert E., Dumontier, Michel, Franz, Nico M., Friedrich, Frank, Gkoutos, George V., Haendel, Melissa, Harmon, Luke J., Hayamizu, Terry F., He, Yongqun, Hines, Heather M., Ibrahim, Nizar, Jackson, Laura M., Jaiswal, Pankaj, James-Zorn, Christina, Köhler, Sebastian, Lecointre, Guillaume, Lapp, Hilmar, Lawrence, Carolyn J., Le Novère, Nicolas, Lundberg, John G., Macklin, James, Mast, Austin R., Midford, Peter E., Mikó, István, Mungall, Christopher J., Oellrich, Anika, Osumi-Sutherland, David, Parkinson, Helen, Ramírez, Martín J., Richter, Stefan, Robinson, Peter N., Ruttenberg, Alan, Schulz, Katja S., Segerdell, Erik, Seltmann, Katja C., Sharkey, Michael J., Smith, Aaron D., Smith, Barry, Specht, Chelsea D., Squires, R. Burke, Thacker, Robert W., Thessen, Anne, Fernandez-Triana, Jose, Vihinen, Mauno, Vize, Peter D., Vogt, Lars, Wall, Christine E., Walls, Ramona L., Westerfeld, Monte, Wharton, Robert A., Wirkner, Christian S., Woolley, James B., Yoder, Matthew J., Zorn, Aaron M., and Mabee, Paula
Abstract:: Despite a large and multifaceted effort to understand the vast landscape of phenotypic data, their current form inhibits productive data analysis. The lack of a community-wide, consensus-based, human- and machine-interpretable language for describing phenotypes and their genomic and environmental contexts is perhaps the most pressing scientific bottleneck to integration across...
Resource Type:: Article
Full Text:: , Judith A. Blake9, J. Gordon Burleigh10, Bruno Chanet11, Laurel D. Cooper12, Mélanie Courtot13, Sándor

Recycled Components in Mantle Plumes Deduced From Variations in Halogens (Cl, Br, and I), Trace Elements, and He-3/He-4 Along the Hawaiian-Emperor Seamount Chain

Creator:: Broadley, Michael W., Sumino, Hirochika, Graham, David W., Burgess, Ray, and Ballentine, Chris J.
Abstract:: Halogens are primarily located within surface reservoirs of the Earth; as such they have proven to be effective tracers for the identification of subducted volatiles within the mantle. Subducting lithologies exhibit a wide variety of halogen compositions, yet the mantle maintains a fairly uniform signature, suggesting halogens may be homogenized...
Resource Type:: Article
Full Text:: , David W. Graham4, Ray Burgess1, and Chris J. Ballentine5 1School of Earth and Environmental Sciences

The Dynamics and Impact of Ocean Acidification and Hypoxia: Insights from Sustained Investigations in the Northern California Current Large Marine Ecosystem

Creator:: Chan, Francis, Barth, John A., Kroeker, Kristy J., Lubchenco, Jane, and Menge, Bruce A.
Abstract:: Coastal upwelling ecosystems around the world are defined by wind-generated currents that bring deep, nutrient-rich waters to the surface ocean where they fuel exceptionally productive food webs. These ecosystems are also now understood to share a common vulnerability to ocean acidification and hypoxia (OAH). In the California Current Large Marine...
Resource Type:: Article
Full Text:: Ecosystem By Francis Chan, John A. Barth, Kristy J. Kroeker, Jane Lubchenco, and Bruce A. Menge

Automated and Accurate Estimation of Gene Family Abundance from Shotgun Metagenomes

Creator:: Nayfach, Stephen, Bradley, Patrick H., Wyman, Stacia K., Laurent, Timothy J., Williams, Alex, Eisen, Jonathan A., Pollard, Katherine S., and Sharpton, Thomas J.
Abstract:: Shotgun metagenomic DNA sequencing is a widely applicable tool for characterizing the functions that are encoded by microbial communities. Several bioinformatic tools can be used to functionally annotate metagenomes, allowing researchers to draw inferences about the functional potential of the community and to identify putative functional biomarkers. However, little is...
Resource Type:: Article
Full Text:: Metagenomes Nayfach, S., Bradley, P. H., Wyman, S. K., Laurent, T. J., Williams, A., Eisen, J. A

Potentially adaptive mitochondrial haplotypes as a tool to identify divergent nuclear loci

Creator:: Garvin, Michael R., Templin, William D., Gharrett, Anthony J., DeCovich, Nick, Kondzela, Christine M., Guyon, Jeffrey R., and McPhee, Megan V.
Abstract:: 1. Genetic tools are commonly used for conservation and management of at-risk species. Individuals are often sampled from mixtures that are composed of many populations, which creates a need to assign individuals to their source. This can be problematic when the genetic divergence among source populations is weak but can...
Resource Type:: Article
Full Text:: divergent nuclear loci Michael R. Garvin*,1,WilliamD. Templin2, Anthony J. Gharrett1, Nick DeCovich2

Ocean Acidification Has Multiple Modes of Action on Bivalve Larvae

Creator:: Waldbusser, George G., Hales, Burke, Langdon, Chris J., Haley, Brian A., Schrader, Paul, Brunner, Elizabeth L., Gray, Matthew W., Miller, Cale A., Gimenez, Iria, and Hutchinson, Greg
Abstract:: Ocean acidification (OA) is altering the chemistry of the world’s oceans at rates unparalleled in the past roughly 1 million years. Understanding the impacts of this rapid change in baseline carbonate chemistry on marine organisms needs a precise, mechanistic understanding of physiological responses to carbonate chemistry. Recent experimental work has...
Resource Type:: Article
Full Text:: Larvae Waldbusser, G. G., Hales, B., Langdon, C. J., Haley, B. A., Schrader, P., Brunner, E. L

ScholarsArchive@OSU

Mathematical and Computational Considerations of a Model of Microbiologically Induced Calcite Precipitation

Use of created snags by cavity-nesting birds across 25 years

Sports and Personality: The Effects of Childhood Sports Participation on Healthy Personality Development

Vulnerability and adaptation of Pacific Northwest shellfisheries to ocean acidification

Finding Our Way through Phenotypes

Recycled Components in Mantle Plumes Deduced From Variations in Halogens (Cl, Br, and I), Trace Elements, and He-3/He-4 Along the Hawaiian-Emperor Seamount Chain

The Dynamics and Impact of Ocean Acidification and Hypoxia: Insights from Sustained Investigations in the Northern California Current Large Marine Ecosystem

Automated and Accurate Estimation of Gene Family Abundance from Shotgun Metagenomes

Potentially adaptive mitochondrial haplotypes as a tool to identify divergent nuclear loci

Ocean Acidification Has Multiple Modes of Action on Bivalve Larvae

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