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Filtering by: Creator Al-Amri, Abdullah M. Remove constraint Creator: Al-Amri, Abdullah M. Non-Academic Affiliation Oregon State University. Center for Genome Research and Biocomputing Remove constraint Non-Academic Affiliation: Oregon State University. Center for Genome Research and Biocomputing

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Comparative Transcriptomics in Stress-Induced Rice

Creator:

Al-Bader, Noor M.

Abstract:

Rice is an important crop that feeds almost half the world population. As climate change models predict floods, drought and extreme temperatures in rice production areas, the need to better understand the genetic basis of adaptation and tolerance to abiotic and biotic stresses is vital to sustain our food supply....

Resource Type:

Dissertation

Full Text:

OF THE DISSERTATION OF Noor Al-Bader for the degree of Doctor of Philosophy in Molecular and
Investigating Protein-lipid-membrane Interactions in Plant Cells using Bimolecular Fluorescence Complementation

Creator:

Tao, Kai

Abstract:

The overall focus of this thesis is on the distribution of specific lipids and membrane proteins of the external and internal membranes of plant cells, in the context of the roles that those lipids and proteins may play in microbe-plant interactions. The work includes the development of several new tools,...

Resource Type:

Dissertation

Full Text:

M. Tyler The overall focus of this thesis is on the distribution of specific lipids
Gene expression of four carbonic anhydrase paralogs across the symbiotic states of the model temperate sea anemone, Anthopleura elegantissima (Brandt 1835)

Creator:

Meier, Emily K.

Abstract:

Anthropogenic CO₂ emissions are shifting the global climate equilibrium, causing widespread losses in biodiversity. Anthozoan cnidarians are some of the species most vulnerable to environmental change. Environmental stress causes corals and sea anemones to expel their endosymbiotic algae, which constitute a primary source of nutrition for some Anthozoa. Carbonic anhydrase...

Resource Type:

Honors College Thesis

Full Text:

Virginia M. Weis ABSTRACT Anthropogenic CO2 emissions are shifting the global climate
Comparative Aquatic Toxicology of Pesticides and Plastics Using the Model Estuarine Fish, Inland Silverside

Creator:

Hutton, Sara J.

Abstract:

Based on current trends both pesticide and plastic production are expected to continue to rise in the coming decade. A growing global population coupled with the effects of climate change are the main drivers of increased pesticide use. Throughout this dissertation pesticides refer to herbicides, fungicides, and insecticides. Plastic production...

Resource Type:

Dissertation

Full Text:

: ______________________________________________________ Susanne M. Brander Based on current trends both pesticide and plastic production are
Do Oak Barrels Contribute To The Variability of The Microbiome of Barrel-Aged Beers?

Creator:

Shayevitz, Avi M.

Abstract:

Lambic and other barrel-aged beer styles are gaining popularity in the United States and Europe and are often treated as a premium product that can command a premium price. However, these styles can be prone to spoilage during the barrel-aging process, which represents a significant time and product commitment by...

Resource Type:

Masters Thesis

Full Text:

AN ABSTRACT OF THE THESIS OF Avram M. Shayevitz for the
Creating High Throughput Low Cost Analysis of Different Labor-Intensive Repetitive Research Processes

Creator:

Sullivan, Christopher M.

Abstract:

Many research projects suffer from limited data causing poor statistical analysis or limited results. The movement to high throughput methods has been building for many years and cross many different disciplines. Lots of these methods start out using pathways that generate large amounts of data but have limited methods to...

Resource Type:

Masters Thesis

Full Text:

THE THESIS OF Christopher M. Sullivan for the degree of Master of Science in Molecular and Cellular
Toxicogenomic Biomarkers Associated with PAH Carcinogenic Potential in a 3D in Vitro Bronchial Epithelial Model

Creator:

Chang, Yvonne

Abstract:

The environmental health science community recognizes polycyclic aromatic hydrocarbons (PAHs) as a re-emerging class of environmental pollutants due to their persistence and prominence in mixtures of concern. Due to their widespread distribution in the environment, exposure to PAHs often occur as complex chemical mixtures. Exposures are linked to numerous adverse...

Resource Type:

Dissertation

Full Text:

& Technology, 2009. 43(4): p. 1061-1066. 17. Oliveira, M., et al., Children environmental exposure to
Genome-Wide Profiling and Analysis of Arabidopsis siRNAs

Creator:

Kasschau, Kristin D., Fahlgren, Noah, Chapman, Elisabeth J., Sullivan, Christopher M., Cumbie, Jason S., Givan, Scott A., and Carrington, James C.

Abstract:

Eukaryotes contain a diversified set of small RNA-guided pathways that control genes, repeated sequences, and viruses at the transcriptional and posttranscriptional levels. Genome-wide profiles and analyses of small RNAs, particularly the large class of 24-nucleotide (nt) short interfering RNAs (siRNAs), were done for wild-type Arabidopsis thaliana and silencing pathway mutants...

Resource Type:

Article

Full Text:

siRNAs Kristin D. Kasschau 1,2 , Noah Fahlgren 1,2,3 , Elisabeth J. Chapman 1,2,3 , Christopher M
Heterokaryon Incompatibility Is Suppressed Following Conidial Anastomosis Tube Fusion in a Fungal Plant Pathogen

Creator:

Ishikawa, Francine H., Souza, Elaine A., Shoji, Jun-ya, Connolly, Lanelle, Freitag, Michael, Read, Nick D., and Roca, M. Gabriela

Abstract:

It has been hypothesized that horizontal gene/chromosome transfer and parasexual recombination following hyphal fusion between different strains may contribute to the emergence of wide genetic variability in plant pathogenic and other fungi. However, the significance of vegetative (heterokaryon) incompatibility responses, which commonly result in cell death, in preventing these processes...

Resource Type:

Article

Full Text:

, Shoji J-y, Connolly L, Freitag M, et al. (2012) Heterokaryon Incompatibility Is Suppressed Following
Host-Selective Toxins of Pyrenophora tritici-repentis Induce Common Responses Associated with Host Susceptibility

Creator:

Pandelova, Iovanna, Figueroa, Melania, Wilhelm, Larry J., Manning, Viola A., Mankaney, Aakash N., Mockler, Todd C., and Ciuffetti, Lynda M.

Abstract:

Pyrenophora tritici-repentis (Ptr), a necrotrophic fungus and the causal agent of tan spot of wheat, produces one or a combination of host-selective toxins (HSTs) necessary for disease development. The two most studied toxins produced by Ptr, Ptr ToxA (ToxA) and Ptr ToxB (ToxB), are proteins that cause necrotic or chlorotic...

Resource Type:

Article

Full Text:

Figueroa1,2, Larry J. Wilhelm1, Viola A. Manning1, Aakash N. Mankaney1, Todd C. Mockler1,3, Lynda M

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Academic Affiliation

Botany and Plant Pathology9
Biochemistry and Biophysics3
Statistics3
Environmental and Molecular Toxicology2
Food Science and Technology2
more Academic Affiliations »

Advisor

Banks, Michael A.1
Brander, Susanne M.1
Curtin, Chris D.1
Dallas, David C.1
Jaiswal, Pankaj1
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Commencement Year

Commencement Year range begin – Commencement Year range end

Current results range from 2018 to 2023

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Unknown 15

Committee Member

Hendrix, David3
Fowler, John2
Sidlauskas, Brian2
Anderson, Jeffrey C.1
Barreto, Felipe1
more Committee Members »

Creator

Cumbie, Jason S.4
Sullivan, Christopher M.4
Carrington, James C.3
Chang, Jeff H.3
Fahlgren, Noah3
more Creators »

Contributor

Barreto, Felipe1
Koch, Jack1
Presnell, Jason1
Tyler, Brett M.1
Weis, Virginia M.1

Date

Date range begin – Date range end

Current results range from 2007 to 2023

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Decade

2020-20297
2010-201919
2000-20092

Degree Field

Molecular and Cellular Biology5
Toxicology3
Food Science and Technology2
BioResource Research1
Fisheries Science1
more Degree Fields »

Degree Level

Doctoral7
Master's4
Bachelor's2

Degree Name

Doctor of Philosophy (Ph.D.)7
Master of Science (M.S.)4
Honors Bachelor of Science (H.B.S.)2

Language

English [eng]28
Spanish; Castilian [spa]1

License

All rights reserved12
Attribution 3.0 United States12
CC0 1.0 Universal2
Attribution 4.0 (CC BY 4.0)1
Attribution-NonCommercial-NoDerivatives 4.0 (CC BY-NC-ND 4.0)1

Non-Academic Affiliation

Oregon State University. Center for Genome Research and Biocomputing[remove]28
Oregon State University. Honors College2
Hatfield Marine Science Center1
Oregon State University. Bioresource Research1

Peer Reviewed

Yes15
No12

Resource Type

Article15
Dissertation7
Masters Thesis4
Honors College Thesis2

Rights Statement

In Copyright25
No Copyright - United States2
In Copyright - Non-Commercial Use Permitted1

Subject

Alternative toxicity testing1
Gene expression1
Lipids1
Machine learning1
Membrane proteins1
more Subjects »

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