Index Catalog // ScholarsArchive@OSU

Deciphering the Cryptic Genome: Genome-wide Analyses of the Rice Pathogen Fusarium fujikuroi Reveal Complex Regulation of Secondary Metabolism and Novel Metabolites

Creator:: Wiemann, Philipp, Sieber, Christian M. K., von Bargen, Katharina W., Studt, Lena, Niehaus, Eva- Maria, Espino, Jose J., Huß, Kathleen, Michielse, Caroline B., Albermann, Sabine, Wagner, Dominik, Bergner, Sonja V., Connolly, Lanelle R., Fischer, Andreas, Reuter, Gunter, Kleigrewe, Karin, Bald, Till, Wingfield, Brenda D., Ophir, Ron, Freeman, Stanley, Hippler, Michael, Smith, Kristina M., Brown, Daren W., Proctor, Robert H., Munsterkotter, Martin, Freitag, Michael, Humpf, Hans-Ulrich, Guldener, Ulrich, and Tudzynski, Bettina
Abstract:: The fungus Fusarium fujikuroi causes "bakanae" disease of rice due to its ability to produce gibberellins (GAs), but it is also known for producing harmful mycotoxins. However, the genetic capacity for the whole arsenal of natural compounds and their role in the fungus' interaction with rice remained unknown. Here, we...
Resource Type:: Article
Full Text:: Novel Metabolites Philipp Wiemann1.¤, Christian M. K. Sieber2., Katharina W. von Bargen3., Lena Studt1,3

The Genome of Tolypocladium inflatum: Evolution, Organization, and Expression of the Cyclosporin Biosynthetic Gene Cluster

Creator:: Bushley, Kathryn E., Raja, Rajani, Jaiswal, Pankaj, Cumbie, Jason S., Nonogaki, Mariko, Boyd, Alexander E., Owensby, C. Alisha, Knaus, Brian J., Elser, Justin, Miller, Daniel, Di, Yanming, McPhail, Kerry L., and Spatafora, Joseph W.
Abstract:: The ascomycete fungus Tolypocladium inflatum, a pathogen of beetle larvae, is best known as the producer of the immunosuppressant drug cyclosporin. The draft genome of T. inflatum strain NRRL 8044 (ATCC 34921), the isolate from which cyclosporin was first isolated, is presented along with comparative analyses of the biosynthesis of...
Resource Type:: Article
Full Text:: Owensby1, Brian J. Knaus1, Justin Elser1, Daniel Miller1, Yanming Di4, Kerry L. McPhail2, Joseph W

Successful Models for Interdisciplinary Graduate Education in the U.S. : Report of the Taskforce on Interdisciplinary Graduate Education Programs

Creator:: Tyler, Brett M.
Abstract:: The Taskforce on Interdisciplinary Graduate Education Programs was given the mission to examine interdisciplinary graduate education programs at a range of institutions around the US, and to identify successful models that could inform the revitalization of interdisciplinary graduate education at Oregon State University. The taskforce examined programs at 29 universities...
Resource Type:: Technical Report
Full Text:: Engineering, College of Engineering) Philip W. Mote (Associate Dean for Strategic Initiatives; College of

Reconciling Conflicting Phylogenies in the Origin of Sweet Potato and Dispersal to Polynesia

Creator:: Muñoz-Rodríguez, Pablo, Carruthers, Tom, Wood, John R.I., Williams, Bethany R.M., Weitemier, Kevin, Kronmiller, Brent, Ellis, David, Anglin, Noelle L., Longway, Lucas, Harris, Stephen A., Rausher, Mark D., Kelly, Steven, Liston, Aaron, and Scotland, Robert W.
Abstract:: The sweet potato is one of the world’s most widely consumed crops, yet its evolutionary history is poorly understood. In this paper, we present a comprehensive phylogenetic study of all species closely related to the sweet potato and address several questions pertaining to the sweet potato that remained unanswered. Our...
Resource Type:: Article
Full Text:: , Robert W. Scotland Reconciling Conflicting Phylogenies in the Origin of Sweet Potato and Dispersal to

De novo Discovery of Novel Long Noncoding RNAs in the North American Beaver

Creator:: Kashyap, Amita
Abstract:: Long noncoding RNAs (lncRNAs) are RNA molecules that are at least 200 nucleotides long and do not encode proteins. lncRNAs have roles in gene regulation, chromatin epigenetics, and molecular scaffolding. In light of mounting evidence implicating species-specific noncoding RNAs and gene regulatory mechanisms in species adaptations, it is reasonable to...
Resource Type:: Honors College Thesis
Full Text:: /29/2017 Amita Kashyap, Ramsey Lab Long noncoding RNA (lncRNA) is regulatory Lee, J. T. Epigenetic

Comparative Aquatic Toxicology of Pesticides and Plastics Using the Model Estuarine Fish, Inland Silverside

Creator:: Hutton, Sara J.
Abstract:: Based on current trends both pesticide and plastic production are expected to continue to rise in the coming decade. A growing global population coupled with the effects of climate change are the main drivers of increased pesticide use. Throughout this dissertation pesticides refer to herbicides, fungicides, and insecticides. Plastic production...
Resource Type:: Dissertation

Comparative Transcriptomics in Stress-Induced Rice

Creator:: Al-Bader, Noor M.
Abstract:: Rice is an important crop that feeds almost half the world population. As climate change models predict floods, drought and extreme temperatures in rice production areas, the need to better understand the genetic basis of adaptation and tolerance to abiotic and biotic stresses is vital to sustain our food supply....
Resource Type:: Dissertation

Toxicogenomic Biomarkers Associated with PAH Carcinogenic Potential in a 3D in Vitro Bronchial Epithelial Model

Creator:: Chang, Yvonne
Abstract:: The environmental health science community recognizes polycyclic aromatic hydrocarbons (PAHs) as a re-emerging class of environmental pollutants due to their persistence and prominence in mixtures of concern. Due to their widespread distribution in the environment, exposure to PAHs often occur as complex chemical mixtures. Exposures are linked to numerous adverse...
Resource Type:: Dissertation
Full Text:: Hydrocarbon Activation: Generation of Reactive and Redox Active o-Quinones. Chemical Research in Toxicology

Investigating Protein-lipid-membrane Interactions in Plant Cells using Bimolecular Fluorescence Complementation

Creator:: Tao, Kai
Abstract:: The overall focus of this thesis is on the distribution of specific lipids and membrane proteins of the external and internal membranes of plant cells, in the context of the roles that those lipids and proteins may play in microbe-plant interactions. The work includes the development of several new tools,...
Resource Type:: Dissertation
Full Text:: superresolution imaging, and his lab member Tao Huang, Jing Wang, Linli Jun, Carey, Ying Zhang, Yerim lee gave

The Genome and Development-Dependent Transcriptomes of Pyronema confluens: A Window into Fungal Evolution

Creator:: Traeger, Stefanie, Altegoer, Florian, Freitag, Michael, Gabaldon, Toni, Kempken, Frank, Kumar, Abhishek, Marcet-Houben, Marina, Poggeler, Stefanie, Stajich, Jason E., and Nowrousian, Minou
Abstract:: Fungi are a large group of eukaryotes found in nearly all ecosystems. More than 250 fungal genomes have already been sequenced, greatly improving our understanding of fungal evolution, physiology, and development. However, for the Pezizomycetes, an early-diverging lineage of filamentous ascomycetes, there is so far only one genome available, namely...
Resource Type:: Article

ScholarsArchive@OSU

Deciphering the Cryptic Genome: Genome-wide Analyses of the Rice Pathogen Fusarium fujikuroi Reveal Complex Regulation of Secondary Metabolism and Novel Metabolites

The Genome of Tolypocladium inflatum: Evolution, Organization, and Expression of the Cyclosporin Biosynthetic Gene Cluster

Successful Models for Interdisciplinary Graduate Education in the U.S. : Report of the Taskforce on Interdisciplinary Graduate Education Programs

Reconciling Conflicting Phylogenies in the Origin of Sweet Potato and Dispersal to Polynesia

De novo Discovery of Novel Long Noncoding RNAs in the North American Beaver

Comparative Aquatic Toxicology of Pesticides and Plastics Using the Model Estuarine Fish, Inland Silverside

Comparative Transcriptomics in Stress-Induced Rice

Toxicogenomic Biomarkers Associated with PAH Carcinogenic Potential in a 3D in Vitro Bronchial Epithelial Model

Investigating Protein-lipid-membrane Interactions in Plant Cells using Bimolecular Fluorescence Complementation

The Genome and Development-Dependent Transcriptomes of Pyronema confluens: A Window into Fungal Evolution

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