Index Catalog // ScholarsArchive@OSU

Computational Approaches for Understanding Combinatorial Gene Regulation

Creator:: Ansariola, Mitra
Abstract:: Gene regulation is a complex mechanism that controls the spatial and temporal expression of genes in a living cell. My dissertation studies focus on two problems. First, tissue-specific gene expression prediction from DNA sequence and chromatin state, and second, the accurate discovery of small over-represented regulatory circuits in gene regulatory...
Resource Type:: Dissertation
Full Text:: degree of Doctor of Philosophy in Molecular and Cellular Biology presented on January 5, 2018. Title

Investigating Transcriptional Control of Specialized Gene Expression in Plants

Creator:: Fraser, Valerie N.
Abstract:: Specialized or secondary metabolism is a collection of pathways and small molecules that, while beneficial to an organism, are not strictly necessary for survival. Plants use secondary metabolites to, among other things, attract pollinators, defend against biotic and abiotic stressors, and form symbioses. Natural products from plants have seen an...
Resource Type:: Dissertation
Full Text:: . Fraser for the degree of Doctor of Philosophy in Molecular and Cellular Biology presented on August 2

The Role of Facilitation for Maintaining Key Processes of Sagebrush-steppe Plant Populations in a Changing Climate

Creator:: Weisgerber, Elizabeth K.
Abstract:: Drought events have been shown to impact species distributions and are predicted to increase in frequency as the climate changes. As this occurs, ecologists predict species distributions will shift dependent upon species ability to track climate. These shifts in species distribution are expected to be particularly acute in arid and...
Resource Type:: Dissertation
Full Text:: , across soil types and across species. I hypothesized that given current models of facilitation along

Is Cover Type Use by Dabbling Ducks at Bald Knob National Wildlife Refuge, Arkansas, Related to Energy Availability?

Creator:: Kreisler, Skye E.
Abstract:: Managers of U. S. Fish and Wildlife Service’s Bald Knob National Wildlife Refuge (Refuge) in central Arkansas want to provide sufficient habitat resources to meet its population objectives for wintering waterfowl. Nutrient reserves acquired during the wintering period appear to support spring migration and subsequent reproductive success for some species,...
Resource Type:: Capstone Project
Full Text:: educational foundation and opportunities to further my knowledge in ecology, wildlife biology, and natural

Impacts of Reduced Tillage and Disturbance on Soil Health and Microbial Community Dynamics in Grass Seed Cropping Systems

Creator:: Zamora, Cesar G.
Abstract:: In Oregon perennial and annual grass seed cropping systems conservation management practices and their impacts on soil health and soil microbial community is not well understood. There is strong motivation to employ conservation tillage and other conservation practices to curb atmospheric carbon levels and improve soil health. However, the few...
Resource Type:: Masters Thesis
Full Text:: modern genomic based techniques we sought to address some of the gaps present in our current

Toward a flexible and accurate approach to null network sampling

Creator:: Bright, Zachary A.
Abstract:: Null networks are a type of random graph that is favored for the analysis of a wide variety of real-world networks, including gene-regulatory networks, food webs, and species co-occurrence matrices. As a hypothesis-generating tool, null networks are invaluable because they can reveal network motifs and unusual large-scale properties of networks...
Resource Type:: Masters Thesis
Full Text:: functional sub-units within a network. Within the context of biology, NMD can be applied to the analysis of

Machine Learning for Precision Medicine: Application to Cancer Chemotherapy Response Prediction and Wound Healing Status Assessment

Creator:: Wei, Qi
Abstract:: Ph.D. candidate Qi Wei's thesis consists of two projects: Chemotherapy Project: a study based on the research paper "Predicting chemotherapy response of various cancer types using a variational auto-encoder approach" submitted to the bioRxiv preprint archive and accepted by the BMC bioinformatics; and Wound Monitor Project: implementing and assessing analytics...
Resource Type:: Dissertation
Full Text:: all current and past team members in the Ramsey lab at the Oregon State University, especially to my

Addressing Free Ridership and the Provision of Hidden Public Goods : Using an Experimental Randomized Control Trial to Test the Nation's Willingness to Pay for the Columbia River Levee System in the Portland Metro Area During an Era of Localism

Creator:: Crawford, Tessa E.
Abstract:: Levee management has historically been considered a local governance issue. Many users of the Portland International (PDX) airport may have no knowledge that the airport is in a floodplain and is protected by a hundred year old levee. This study asked survey respondents across the U.S. how much they would...
Resource Type:: Capstone Project
Full Text:: , 8 managed and updated to meet current standards. Levees are a public good that often are

Oregon’s Non-Consumptive Recreational Ocean User Community : Understanding an Ocean Stakeholder

Creator:: Eardley, Christopher S. and Conway, Flaxen D. L.
Abstract:: Oregon is in the midst of major changes to the way it manages use of the ocean off its shores. Consideration for all stakeholder groups will contribute to defensible decisions regarding the use of ocean and coastal resources. This relies on an understanding of the various stakeholders in ocean resources,...
Resource Type:: Capstone Project
Full Text:: energy sources, and their attitudes about current and future domestic energy policy. The survey

A Corpus Linguistic Approach to Native American Authored Children’s Storybooks

Creator:: Goka-Dubose, Emiko
Abstract:: The counseling field is infused with multiculturalism and social justice competencies from the Council for Accreditation of Counseling and Related Educational Programs accreditation standards of the academic institutions to the American Counseling Association Code of Ethics. Counselors are tasked with understanding multiculturalism from self-awareness to clients’ worldviews to larger implications...
Resource Type:: Dissertation
Full Text:: ; however, development of CS in children is in its infancy. The current research observes CS in childhood

ScholarsArchive@OSU

Computational Approaches for Understanding Combinatorial Gene Regulation

Investigating Transcriptional Control of Specialized Gene Expression in Plants

The Role of Facilitation for Maintaining Key Processes of Sagebrush-steppe Plant Populations in a Changing Climate

Is Cover Type Use by Dabbling Ducks at Bald Knob National Wildlife Refuge, Arkansas, Related to Energy Availability?

Impacts of Reduced Tillage and Disturbance on Soil Health and Microbial Community Dynamics in Grass Seed Cropping Systems

Toward a flexible and accurate approach to null network sampling

Machine Learning for Precision Medicine: Application to Cancer Chemotherapy Response Prediction and Wound Healing Status Assessment

Addressing Free Ridership and the Provision of Hidden Public Goods : Using an Experimental Randomized Control Trial to Test the Nation's Willingness to Pay for the Columbia River Levee System in the Portland Metro Area During an Era of Localism

Oregon’s Non-Consumptive Recreational Ocean User Community : Understanding an Ocean Stakeholder

A Corpus Linguistic Approach to Native American Authored Children’s Storybooks

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