Humanities have been craving more freedom and conveniences in whatever form. Carriages evolved to cars and ultimately to aircraft so that one can reach any place in the globe within a day. The mobile phone has enabled people to make a phone call without a need to find a phone...
Rhizopus microsporus is a globally ubiquitous opportunistic human and plant pathogen that is known to harbor endosymbiotic bacteria. Differences between populations of clinical and environmental R. microsporus isolates have yet to be assessed on a global scale. Whole-genome sequence data were used to explore fungal biology and to assess potential...
Anaerobic ammonium oxidation (anammox) has recently appeared as a promising approach for removing nitrogen from landfill leachates because it requires less oxygen and no organic carbon compared to traditional nitrification-denitrification system, and it produces low sludge volumes, thereby reducing operating and biological sludge disposal costs by over 60%. Anammox bacteria...
As the link between human microbiomes and health has become more established, the interest in applying statistical approaches to microbiome data to understand the mechanisms behind these links has grown. However, microbiome data is often of unmanageable size, and consequently, producing quality lower dimensional representations of samples is a significant...
Anammox (anaerobic ammonium oxidation) bacteria are capable of providing low-cost nitrogen removal for numerous types of wastewaters. However, low growth rates cause long startup-times and inhibition by oxygen and metabolic substrates necessitate close process control to maintain performance. Incorporation of Simultaneous Anammox and Denitrification (SAD) into constructed wetlands could provide...
We describe a series of novel computational models, CERENKOV (Computational Elucidation of the REgulatory NonKOding Variome) and its successors CERENKOV2, CERENKOV3, and Convolutional CERENKOV3, for discriminating regulatory single nucleotide polymorphisms (rSNPs) from non-regulatory SNPs within non-coding genetic loci. The CERENKOV models are designed for recognizing rSNPs in the context of...
Novel donor-type graphite intercalation compounds (GICs) containing tetra-n-alkylammonium (TAA) cations have been synthesized by using both ion-exchange and electrochemical methods. Structural and compositional data of the resulting TAA-GICs are investigated by using powder X-ray diffraction (PXRD), one-dimensional electron density calculations, thermogravimetric and elemental analyses, and capillary zone electrophoresis (CZE). A...
The intriguing size- and shape dependent properties of nanoparticles have garnered recent attention in many science and engineering areas. When the particle size is in the nanometer size range, the material exhibits very different properties such as surface plasmon resonance (of gold nanoparticles) and superparamagnetism (of iron oxide nanoparticles). The...
The increase in the demand for energy is estimated to be 28 TW by a year of 2050, which is twice of the energy produced in 2010, in response to the unprecedented growth of the global population. Current energy market is heavily relying on the fossil fuel, which brings the...
Hyporheic Exchange Flow (HEF) is driven by head gradients defined by the hydro-topography of the stream surface, which is controlled by the particular geomorphology of the stream. We quantified the impact of large wood, which typically exerts a strong control on stream morphology, on HEF in a second order, low...