An extensive theory of symmetric error control coding has been developed in the last few decades. The recently developed VLSI circuits, ROM, and RAM memories have given an impetus to the extension of error control coding to include asymmetric and unidirectional types of error control. The maximal numbers of unidirectional...
This thesis is an account of investigation on the natural products deriving from various marine algae and has resulted in the discovery of eleven novel bioactive metabolites. Isolation and characterization of these new molecules were carried out using different chromatographic techniques and by analyses of different spectroscopic data, respectively. Using...
Phytophthora cinnamomi is a soilborne pathogen that causes root rot disease of highbush blueberry (Vaccinium corymbosum L.). When new installations of susceptible blueberry cultivars are infected with P. cinnamomi, plants often fail to grow significant new tissue, greatly reducing yields over the life of the planting. Chemical fungicides are available...
Classical chaotic scattering experiments were performed on ten different four hill potentials, unique under x-axis reflection, given by: V(x,y) = x²y²e⁻⁽ˣ² ⁺ ʸ²⁾ σᵢ where σᵢ was ±1 depending upon quadrant. Our work was based on a paper (9) that only studied the case where σᵢ =1 in all quadrants....
The free convective heat transfer phenomena in air between two
vertical plates 24 by 38 inches spaced 15.895 mm apart, was investigated in this experimental study. One plate was isothermal and, the
other adiabatic.
A quartz fiber anomometer was used for measuring local
velocities in the air between the vertical...
This report presents tables of suspended-sediment data collected from 1956 to 1967 at 10 sites in the Umpqua River basin. Computations based on these data indicate that average annual suspended-sediment yields at these sites range from 137 to 822 tons per square mile.
Because available data for the Umpqua River...
Physical activity recognition using accelerometer data is a rapidly emerging field with many real-world applications. Much of the previous work in this area has assumed that the accelerometer data has already been segmented into pure activities, and the activity recognition task has been to classify these segments. In reality, activity...
While the need to solve problems of overcapitalization and excess investment in fisheries is now broadly
admitted, very little information exists on the level of capitalization and the structure of capital invested in
the fishing sector. This paper presents the first results of a research program aiming at assessing the...
To best manage Eagle Creek National Fish Hatchery and minimize any negative impacts that the current hatchery program may be having on Endangered Species Act-listed salmonids in the Eagle Creek Basin, I determined if wild fish are being displaced from preferred habitats by hatchery salmonids Oncorhynchus spp. This thesis had...
The work described herein details the synthesis and application of
biphenyls that probe the effects of hydrogen, Cl / Br, and methyl substituents
on the aryl ring of the terminal acetylenic carbon. From this work, we
successfully developed the rapid synthesis of phenyl acetylenes in 3-4 steps
from inexpensive commercially...
Investigators have been studying an aggregate
containing enzymes of deoxyribonucleoside triphosphate
biosynthesis in T4-phage infected bacteria. They suggest
that it behaves as an organized complex, efficiently
channeling DNA precursors to the replication apparatus.
Previous work has suggested that about 10 enzyme
activities remain associated through several fractionation
steps. This multi-enzyme...
Symbiotic associations are established between non-leguminous
(actinorrhizal) nitrogen-fixing flowering plants and two categories
of microorganisms: mycorrhizal fungi and a filamentous actinomycete.
The actinomydete induces nodule formation and produces nitrogenase,
the enzyme responsible for the reduction of atmospheric nitrogen to
a form available to higher plants. The mycorrhizal fungus is found...
The three essays in this dissertation progressively answer the following questions: (a) How important are constraints? (b) Who benefits from removing constraints? (c) When does a constraint for a single market predominantly affect closely related markets? These questions are applied in the context of time, weather, and minimum wage constraints,...
Ammonia oxidizing bacteria, including Nitrosomonas europaea, are inhibited by aromatic hydrocarbons which can be found in wastewater treatment plants. In recent studies, changes have been observed in N. europaea cell size upon exposure to benzene, but not toluene. Additionally, NE 1545, a gene proposed to be involved in fatty acid...
The focus of this research was to develop bacterial community indicators of stream sanitary and ecological condition. The first study compared substrate utilization patterns between centrifuged and uncentrifuged split samples. We found a shift in the relative proportion of each group of bacteria following centrifugation, with a marked increased in...
This thesis describes the chemical investigation of marine cyanobacteria collected in Madagascar and Panama with an emphasis on the isolation and structure elucidation of medicinally relevant secondary metabolites.
A collection of the marine cyanobacterium Lyngbya majuscula from the Radames Islands, Madagascar yielded two new cyclic depsipeptides, radamamides A and B,...
A low-energy, low-exposure-rate, guarded-field ionization
chamber system with a sensitive volume of approximately 1040 cm³ and an exposure-rate range from 60 mR/h to less than 0.5 mR/h
was designed, constructed and calibrated. The calibration was
effected by constructing and calibrating a 60 cm³ volume transfer
chamber of similar design against...
The asymmetric nature of bit errors in several practical applications provides grounds for efficient error control techniques. The Z-channel model and special classes of codes like asymmetric error detection codes and t-asymmetric error correcting/d-asymmetric error detecting codes can be successfully used in ARQ protocols for feedback error control enhancement. This...
The purpose of this thesis is to analyze an abrupt case of climate change in the past as a means to understand the mechanisms that force climate change. By looking to past analogs of climate change, we hopefully will gain an understanding of these events, which could be used to...
Metagenomics has revealed that the marine microbial biosphere is immensely more diverse than originally considered, and is an almost untapped reservoir for the potential discovery of microbial natural products. Despite numerous advances in culturing, biosynthetic engineering and genomic-based screening efforts to uncover much of this diversity in relatively accessible environments,...
Article 1: Behavior of Epoxy Injected Diagonally Cracked Full-Scale CRC Deck-Girders.
Many cast-in place reinforced concrete deck-girder bridges (RCDG) remain in the national inventory and exhibit diagonal cracking. Epoxy injection has been in use for several decades as a method for sealing diagonal cracks, but the effects on girder behavior...
The extent of biological invasions, their role on the feeding of
native fishes and their impact on community stability were
investigated in Alsea Bay and Yaquina Bay, two estuaries on the
central Oregon coast, USA. Most nonindigenous species (NIS)
introduced in these intermediately invaded estuaries are
considered byproducts of culturing...
The following bibliography was first prepared in April 1974 for use as a working bibliography on the State/Federal Dungeness Crab Management Program. The present collection combines the articles appearing in the 1974 report with those that have appeared through June 1976.
An earlier bibliography on the Dungeness crab (Butler, 1967)...
This thesis details my investigations of marine cyanobacterial natural products that resulted in the discovery of eighteen new secondary metabolites. Isolation and characterization of these unique molecules were carried out using different chromatographic techniques and by careful analyses of 1D and 2D NMR data, respectively. Preliminary bioassays of the crude...
"Piping Design and Engineering" first published in 1963 by
Grinnell, Co. is widely used by engineers to perform approximate
thermal stress analysis of high-temperature piping systems. The
text consists of numerical constants to calculate end reactions and
maximum bending stresses in a variety of piping configurations from
known properties of...
The majority of people suffer from back pain at some point in their lives. Back pain is the leading cause of disability globally, ahead of 290 other conditions1. Over one million people in the United States receive spine surgery annually2. This thesis looked at five standard surgical procedures performed on...
Tins paper addresses the importance of different product farms and their origin when considering the market structure in the European salmon market. The competition between Farmed Atlantic salmon and wild-caught pacific salmon has received some attention previously. However, this was before frozen Atlantic salmon emerged as an important product form...
Two digestibility trials using sheep were conducted to determine
the digestibility coefficients of a commercially processed NaOH treated
annual ryegrass straw cube. Comparisons were made with loose, chopped
ryegrass straw and a ryegrass straw cube processed with molasses as a
binder.
The NaOH cubed straw was produced by spraying a...
Measurements have been made of γ -γ directional correlations on the
following cascades, following the decay of ¹¹¹Pd and ¹⁰⁹Pd :
In ¹¹¹Ag : (454, 633, 762 - 391) keV (526, 797 -633) keV
(526, 797 -[633] -391) keV
In ¹⁰⁹Ag : (390, 413, 424, 551, 558 - 311) keV...
A simple package of routines that can be easily implemented
in small minicomputers used in process control, was developed to
simulate dynamic systems and computer control of simple dynamic
systems found in the process industries.
Two different systems, a gas absorber and a fifth-order
transfer function were chosen as processes...
Cellooligosaccharides are the reaction intermediates produced during the hydrolysis of cellulose to glucose. Hence, they have the same chemical structure as cellulose, just shorter chain lengths. Cellooligosaccharides up to DP eight are soluble in water. The soluble cellooligosaccharides can be used "as is" in the food industry as non-digestible oligosaccharides...
The paper analyses the annual accounts for the period 1990-94 of a sample of approximately 100 fishing firms operating out of ports in Schleywig-Holstein and exploiting finfish stocks in the North Sea and Baltic, and shrimp stocks in the North Sea. Detailed information is provided on costs and returns by...
Research on chemicals used as pesticides has been intensified
because of current interest in the possible long range effects on the
biota. It is vitally important to understand the action of these
chemicals on the metabolism of animals and plants which have
direct or indirect contact with pesticides.
It has...
The contributions of Korean immigrant-owned fashion companies (KIOFCs) are increasing in the U.S. fashion industry. This study explored more deeply how KIOFCs can obtain competitiveness in the fiercely competitive fashion market. Specifically, this study 1) described the prominent characteristics of KIOFCs in the Los Angeles area, 2) investigated the multidimensional...
Most of existing commercial unsaturated polyester (UPE) resins are typically composed of a UPE and a high amount of highly volatile, flammable, and toxic styrene. The emission of hazardous styrene in the handling of the UPE resins and the preparation and use of fiber-reinforced UPE composites poses severe hazards to...
This dissertation consists of four studies of Populus and Eucalyptus biotechnology and genomic science: 1) induction of floral sterility by tapetal expression of the ribonuclease Barnase in Populus; 2) CRISPR Cas9-mediated gene editing targeting LEAFY (LFY) and AGAMOUS (AG) homologs in Populus; 3) induction of floral sterility by CRISPR Cas9...
The overall goal of this project was to design a wood frame shear wall that could withstand greater displacement before damage occurred to the Gypsum Wall Board (GWB). More specifically, the objectives of the study were: (1) to evaluate damage to the GWB in alternative shear wall designs at 1%,...
This thesis is an investigation of the natural products deriving from marine algae and cyanobacteria and has resulted in the discovery of eleven new secondary metabolites. The structure elucidations of these new molecules were performed using a variety of spectroscopic techniques. Four new macrolides were isolated and characterized from the...
Bacteriophage T4 gene 42 encodes dCMP hydroxymethylase, an
enzyme unique to the deoxyribonucleotide metabolism of T-even
bacteriophages. To study biochemical and biophysical properties of
the enzyme, as well as the interaction of dCMP hydroxymethylase with
other DNA precursor biosynthetic enzymes in vitro, availability of large
amounts of the enzyme is...
A compound series capable of reversing the antiviral effect of Ribavirin (RBV) against H1N1 was
identified from a high throughput screen designed to discover compounds capable of increasing the
fidelity of the RNA-dependent RNA polymerase (RDRP) n ribovirus quasispecies. Two lead compounds,
RIC-1 (EC50 of 78.4 nM) and RIC-2 (EC50...
The biological preparation of aflatoxins was accomplished by
culturing the mold Aspergillus flavus on various media. Aflatoxin
was isolated by chloroform extraction of the culture, and purified
by column fractionation and crystallization. Rice, wheat, soya bean,
peanut and YES media were found to give high yields of aflatoxin. It
was...
The purpose of this study was to examine the validity and reliability of the 30-minute cycling time trial to estimate the heart rate at lactate threshold. Recreationally trained cyclists and triathletes (n = 47) performed 3 tests in random order: 1) One graded exercise test to directly determine lactate threshold...
Death of flower parts near bloom due to inflorescence necrosis (IN) is associated with high ammonium (NH₄⁺) concentration in flower clusters, shade, cool wet weather preceding bloom, and excessive vigor. Faults in NH₄⁺ assimilation are suspected to cause a rise in NH₄⁺ concentration to toxic levels in flower cluster but...
The word orogenesis is derived from the Greek words oros meaning mountains and genesis meaning creation and refers to the study of the complex processes involved in the growth and evolution of mountain ranges (orogens). Orogens develop where crustal deformation builds topography and forms landscapes. This dissertation explores the role...
The capability of the marine red macroalga Portieria hornemannii to remove and detoxify the nitroaromatic explosive 2,4,6-trinitrotoluene (TNT) in a seawater environment was evaluated using an axenic microplantlet suspension culture system. Microplantlets were challenged with TNT dissolved in seawater at concentrations of 1 to 50 mg L-1 in well-mixed photobioreactors...
Several experiments were conducted to examine the toxicity of Senecio jacobaea (SJ) in animals resistant to pyrrolizidine alkaloid (PA) intoxication and to determine the extent of alterations in mineral metabolism as a result of SJ intoxication. Inclusion of SJ into diets containing added copper (Cu) resulted in increased (P<.01) liver...
The closed insulated pallet system (CIPS) was evaluated for growth, yield, and
fruit quality of tomato genotypes with determinate growth habit. Plants were irrigated
with several levels of sodium chloride (NaCl) salinized water. Tomato growth and yield
were significantly greater in CIPS than in conventional surface-irrigated containers,
regardless of irrigation...
Cyclopropenoid fatty acids (CPFA) are unique compounds that
contain a highly strained and reactive cyclopropene ring structure.
These compounds have been shown to cause a number of toxic effects
in a variety of animals. Rainbow trout (Salmo gairdneri) have
proven to be particularly sensitive to CPFA. Studies have revealed
that...
Immunosuppression during the periparturient period leads to increased susceptibility to infectious diseases in beef cows. Newborn calves rely on passive transfer of antibodies from their mothers at birth for protection against diseases in the first two months of age. It is unknown if supranutritional Se supplementation of cows during pregnancy...
Studies to evaluate resistance in snap beans, Phaseolus vulgaris L. to adult western spotted cucumber beetles, Diabrotica u. undecimpunctata Mann. were conducted in greenhouse cages, field cages, field plots, and in temperature controlled cabinet in the laboratory. Results showed that there were differences in susceptibility to adult feeding injury between...
The role of fire as a natural disturbance, its interactions with nonnative species and effects of repeated fires in the Hawaiian Islands have received little investigation. We are unsure of the role fire played in shaping forest structure and composition as well as affecting evolutionary processes of the native biota....
The three-body heterogeneous and wall recombination coefficients for atomic oxygen were measured using an electron paramagnetic
resonance spectrometer to monitor the time dependence of the
atomic oxygen concentration. This measurement was made for a
pressure range of from .224 to 1.10 torr using pyrolysis of ozone as
a source of...
Urban stormwater runoff with a high impervious area can significantly impact pollution concentrations of receiving water bodies. The use of low impact development (LID), which mimics the hydrological properties of the site before development, has been studied in an increasing number of studies, and the available database has shown to...
A numerical model is developed to estimate wave forces on A-Jacks armor units. The forces include drag, inertia, buoyancy, and slamming as the unit penetrates the free surface. The wave force model is used to determine the rigid body motions of the units. Bulk forces on a matrix of units...
Incidental bycatch in commercial fisheries has been identified as a threat to black-footed albatrosses (Phoebastria nigripes) and Laysan albatrosses (P. immutabilis). Effective long-term conservation of these albatrosses necessitates a thorough understanding of their marine distribution, which marine habitats are selected during foraging, and where they are most likely to interact...
The dihydrofolate reductase gene of bacteriophate T4
has been investigated at the structural level to elucide the
unusual regulation of expression of this gene and possible
evolutionary relationships between the ohage and drug resistance
factors-encoded dihydrofolate reductases (DHFR).
A 1.1-kilobase-pair restriction fragment of the T4
multiple mutant dec8 containing frd,...
Determination of the source and fate of natural (higher plant lipids, marine
lipids, etc.) and anthropogenically (e.g., petroleum, coal emissions) derived
hydrocarbons and oxygenated compounds in the environment was accomplished
using gas chromatography (GC) and gas chromatography-mass spectrometry (GC-MS)
to characterize or identify molecular biomarkers to be utilized as tracers....
Pile caps are structural elements used to transfer loads from columns to a group of piles, which transfer them to stronger soil layers. Pile cap with horizontal distance between the column and piles less than twice its effective depth is categorized as "deep," where significant nonlinear strain distribution occurs through...
Superwarfarins are anticoagulant rodenticides that are 100 times more potent and 15 times more persistent than warfarin. They have been used since the 1980s and cause over 10,000 cases of accidental and intentional poisonings per year. Apart from inducing uncontrollable bleeding, by inhibiting the vitamin K cycle, superwarfarins can disrupt...
This thesis summarizes work completed over the previous four years primarily focusing on chloroplast phylogenomic inquiry into the genus Pinus and related Pinaceae outgroups using next-generation sequencing on Illumina platforms. During the time of our work, Illumina sequence read lengths have essentially been limited to 25 to 100 base pairs,...
A novel type of model substrates, i.e. immobilized p-aminophenyl-β-D-cellooligosaccharides,
was developed and used in the study of exocellulases. The
two major cellobiohydrolases from Trichoderma reesei, CBH I and CBH II were
used as representative enzymes. p-Aminophenyl derivatives of cellobiose (PAPG₂),
cellotriose (PAPG₃), and cellotetraose (PAPG₄) were synthesized from the reaction...
Unit cell or pin cell calculations form the basis for
most nuclear core modeling. Because of this, it is of primary
importance to perform these unit cell calculations
accurately.
The subject of this thesis is the analysis of one of
the major approximations made in unit cell modeling, the
infinite...
Chlorpyrifos-methyl, an organophosphate insecticide, and propoxur, a carbamate insecticide both widely used in Thailand, were studied in the laboratory for degradation and behavior in two Thai and two Oregon soils. The purpose of the study was to ascertain the comparative persistence and to measure behavior such as adsorption, evaporation and...
Global amphibian declines have been attributed to numerous and often synergistic causes, such as invasive species, pathogens, and ultraviolet-B (UV-B) radiation. The effects of these stressors are context dependent and can vary with location, species, and populations. As sensitivity to UV-B has shown inconsistencies across amphibian taxa, it can be...
Coibamide A is a methyl-stabilized cyclic depsipeptide with a lariat side chain that was isolated from a marine cyanobacterium as part of an International Cooperative Biodiversity Groups program based in Panama. Previous testing of this potent and selective growth-inhibitory agent in the National Cancer Institute (NCI) in vitro 60 human...
Meadowfoam (Limnanthes alba Hartw. ex Benth) seed meal (MSM), a by-product of meadowfoam oil extraction, has a plant defensive compound known as glucosinolate glucolimnanthin (GLN). Myrosinase enzymes present in soil microbes and meadowfoam seeds can convert GLN to glucosinolate breakdown products (GBPs), which demonstrate herbicidal activity and have the potential...
Since the discovery of penicillin in 1928, the fungal kingdom has remained a fertile source for the discovery of new, biologically active, natural products. Further, as natural products continue to be discovered from fungi, a deeper understanding of the critical role of specialized metabolism in fungal ecology is afforded. The...
Previous investigations have failed to show benefits of low level laser therapy (LLLT) for tendon healing in horses, contrary to reports in other species. We hypothesized that delivery of LLLT at manufacturer-recommended energy fluence through equine cadaver skin to equine tendon-derived fibroblasts in vitro would increase cell proliferation, metabolic activity...
Salmon survival and eventual recruitment success have long been thought to be determined within the first summer following ocean migration. Juvenile growth during this period is largely influenced by ocean conditions such as temperature, prey availability, abundance, and quality. Shifts in these conditions due to climatic perturbations are particularly prevalent...
Black vine weevil (BVW), Otiorhynchus sulcatus Fabricius, is a serious pest in cranberry, Vaccinium macrocarpon. Larvae feeding below the soil surface cause damage to the roots and underground stems. Knowledge is sparse in regard to the damage potential of BVW in Pacific Northwest cranberry beds. Control with insecticides is limited...
A dissertation describing the results of a series of greenhouse experiments conducted to better understand phytoremediation in stormwater bioretention systems.
This thesis details my investigations of marine cyanobacterial natural products that resulted in the discovery of thirteen new secondary metabolites, the isolation of over fifteen previously reported metabolites and the biosynthetic investigation of two additional cyanobacterial compounds. Two novel lipopeptides were identified from a Lyngbya majuscula and Schizothrix sp. assemblage...
This dissertation describes the cloning and characterization of the TOUSLEDlike kinases genes of maize (ZmTLKs). The TOUSLED-like kinases (TLKs) are a conserved family of nuclear Ser/Thr kinases in higher eukaryotes. The maize genome has three TOUSLED-like kinase genes (ZmTLK1, ZmTLK2, and ZmTLK3). Based upon sequence similarity, the ZmTLKs are divided...
This investigation was conducted to determine the
effect of estrogen replacement therapy (ERT) on vitamin B-6
status of postmenopausal women. Nineteen postmenopausal
women served as subjects. Nine (54.7 + 4.7 years) were
taking ERT (experimental group); ten (56.8 + 2.3 years)
were not (control group). For three consecutive days,
subjects...
The distribution of anthocyanin pigments and polyphenolics of sweet (Prunus avium) and sour cherries (Prunus cerasus) were determined by Ultraviolet- Visible (UV-Visible) spectrophotometry and High Performance Liquid Chromatography with photodiode array detector (HPLC-DAD). Their antioxidant properties were determined by Oxygen Radical Absorbance Capacity (ORAC) and Ferric Reducing Antioxidant Power (FRAP)....
Escherichia coli double-strand uracil-DNA glycosylase (Dug) was purified to apparent homogeneity from bacteria that were defective in uracil-DNA glycosylase (Ung). After cloning the dug gene, recombinant Dug was overexpressed, purified, and characterized with respect to activity, substrate specificity, product DNA binding, and mechanism of action. Purified Dug excised both uracil...
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5.1.1 Comparison of Substrate Specificity of Dug on U/G and
eC/G DNA
Tocopherols are plant secondary metabolites that are known collectively as
vitamin E. Tocopherol compounds act as potent antioxidants by quenching free
radicals and protecting fatty acids from oxidative damage. In humans (in vivo)
tocopherols protect membrane lipids from breaking down, while in oils (in vitro)
tocopherols protect fatty acids from...
Microscopic organisms inhabit virtually every niche on this planet, where they perform functions vital to all life on earth. Accordingly, humans host a complex community of microorganisms (i.e. the gut microbiome) that inhabit the gastrointestinal tract and modulate host physiology. Insight into the specific mechanisms through which gut microbes influence...
Ascorbic acid, or vitamin C, is well known as a co-factor for proline-hydroxylase and as an anti-oxidant. However, it is also capable of forming covalent bonds, particularly in the role of a nucleophile, henceforth termed 'ascorbylation'.
The ascorbylation of electrophiles can occur under physiological conditions. Furthermore, there are a number...
Radiative feedbacks associated with changes in water vapor, temperature, surface albedo and clouds remain a major source of uncertainty in our understanding of climate's response to anthropogenic forcing. In this dissertation climate model data is used to investigate variations in feedbacks that result from changing CO₂ forcing and the time...
Serine transhydroxymethylase (STHM), a pyridoxal 5'-
phosphate requiring enzyme is indirectly involved in
pyrimidine deoxynucleotide metabolism. A decrease in the
activity of this enzyme could lead to altered deoxycytidine
(dC) metabolism. This study was undertaken to determine if
a vitamin B-6 deficiency affects dC metabolism. The effect
of a vitamin...