Small rivers, such as those that line the Oregon coast, have been shown to deliver significant concentrations of suspended sediments and nutrients to estuaries and the coastal ocean during wet seasons during which winds are predominantly downwelling-favorable. The fate of the buoyant source water and of any suspended or dissolved...
A model of an exhaust plume was developed and programmed
on a digital computer. The purpose of the model was to predict the
concentration and size distribution of ice particles produced from
automobile exhaust during arctic conditions. The model accounted
for the nucleation, growth, and freezing of the condensed water...
The Columbia River delivers the greatest amount of freshwater to the coastal ocean along the U.S. Pacific coast. This freshwater forms the Columbia River plume, a mesoscale plume with significant implications on coastal ocean physical, biological, chemical, and geological processes. The plume is transported south and offshore during the upwelling...
This dissertation investigates the dynamics of the tidally modulated outflow from the Columbia River mouth using high resolution measurements of velocity, density and turbulent microstructure. At high tide, flow through the river mouth reverses from flood (onshore) to ebb (offshore). During ebb, buoyant fluid issues from the river mouth and...
Currently, forecasts produced by the Oregon-Washington (OR-WA) Coastal Ocean Forecast System are constrained by assimilation of only surface observations. The 4-dimensional variational (4DVAR) data assimilation (DA) algorithm is utilized to combine the model and the data, with the time-independent forecast ("background'') error covariance B. In this study, two possible improvements...
Influences of tidal and slower (subtidal) oceanic flows over the continental shelf and slope off Oregon are studied using a high-resolution ocean circulation model and comparative model-data analyses. The model is based on the Regional Ocean Modeling System (ROMS), a fully nonlinear, three-dimensional model (using hydrostatic and Boussinesq approximations). The...
Changes in ocean conditions influenced by climatic fluctuations have lead to changes in individual species distributions, which alter the diversity, communities and species interactions across marine ecosystems worldwide. Assessing the species composition and identifying regions and habitats that can safeguard the persistence of biota are critically important. In this dissertation,...
Copper and iron are essential micronutrients that are required by marine primary producers for a variety of metabolic processes. Over 99% of both copper and iron are bound within organic complexes in the marine environment, however the molecular identity of many of these complexes remains unknown. The speciation of these...
Modifications of an ocean model are described, as the objective for which the model was used changed to study the kinematics and dynamics of an eastern-boundary poleward undercurrent.
Two bloom-detection products were developed for the Oregon coast that describe the relative percent change observed between successive pairs of 8-day chlorophyll-a (CHL) and fluorescence line-height (FLH) products obtained from the MODerate Resolution Imaging Spectroradiometer aboard the Aqua spacecraft (MODIS-Aqua). The CHL[subscript dev] and FLH[subscript dev] products, respectively, were optimized...
Harmful algal blooms (HABs) are a problem for coastal communities, the fishing industry, and coastal organisms. Pseudo-nitzschia spp. is a regularly occurring diatom in Oregon’s coastal waters. At times, Pseudo-nitzschia spp. can facultatively produce domoic acid, a neurotoxin that can bioaccumulate in the food chain. While regular shore-based sampling provides...
A high volume sampling system, employing Nuclepore filters and
designed for sampling particulate in the plumes from industrial
sources using a light aircraft, is described. The effluent of kraft
paper mills was sampled using this system and then analyzed by
electron microscopy.
Size distributions of particles were obtained at several...
Phytoplankton are a sentinel class of organisms in the marine environment. Through their photosynthetic activity in sunlit waters worldwide, phytoplankton shape the health and productivity of marine ecosystems and impact the global climate. In this work a range of ocean sensing technologies (via ships, surf zone sampling, moorings, gliders, and...
The presence of predators and competitors can offer biotic resistance against the establishment of non-native species, including the European green crab, Carcinus maenas, (EGC) in the estuary of Coos Bay, Oregon. It has been suggested that limb loss, or autotomy of the EGC will increase in areas that include populations...
It is well documented that microplastics and semi-synthetic particles (<5 mm) pervade the marine environment, with their ingestion by marine fauna eliciting global concern. While fishes exposed to microparticles in a laboratory setting have exhibited both sub-lethal and lethal effects, the diversity in material, morphology, and size of these contaminants...
Oyster reefs provide an array of ecosystem services. Specifically, they provide structurally complex habitat for fish and invertebrate species such as the commercially important Dungeness crab, Metacarcinus magister. This ecosystem service, once provided by the native oyster Ostrea lurida, is now provided by the commercially cultured oyster Crassostrea gigas in...
Wind-driven coastal upwelling brings subsurface water onto the central-Oregon shelf after the spring transition each year. This cold and salty source water is oxygen-poor, yet above the hypoxic threshold, dissolved oxygen < 1.4 ml l⁻¹. Once on the shelf, dissolved oxygen (DO) concentrations of upwelled near-bottom waters are modified by...
Inner-shelf circulation and mechanisms of across-shelf transport of water masses were examined using seven years of observations collected by the Partnership for Interdisciplinary Studies of Coastal Oceans (PISCO) program, a long-term monitoring effort along the central Oregon coast. Since 1998, moored velocity and hydrographic measurements have been obtained during the...
Netarts Bay is a shallow, temperate, tidal lagoon located on the northern coast of Oregon and site of the Whiskey Creek Shellfish Hatchery (WCSH). Data collected with an automated flow-through system installed at WCSH capable of high-resolution (1 Hz) pCO2 and hourly TCO2 measurements, with measurement uncertainties of <2.0% and...
Pacific razor clams (Siliqua patula) are narrow oblong bivalves that can be found in sandy habitats along the western coast of the United States, from Alaska (Aleutian Islands) to southern California (Pismo Beach). In Washington state, the razor clam fishery has been documented to be an important contributor to the...