The organic content of the Columbia River suspended particulate matter (SPM) results from the input of autochthonous (phytoplankton) and allochthonous (terrestrial vascular plants) production. The contribution of these two sources appears seasonal and responds to factors such as rainfall, runoff, river flow, light and nutrients availability. While numerous studies have...
Copper and iron are essential micronutrients that are required by marine primary producers for a variety of metabolic processes. Over 99% of both copper and iron are bound within organic complexes in the marine environment, however the molecular identity of many of these complexes remains unknown. The speciation of these...
In the last twenty years, human trafficking has gained attention in government agendas and media coverage, while anti-trafficking projects have burgeoned worldwide. Anti-trafficking efforts, however, have almost exclusively addressed the issue of sex trafficking with a focus on rescuing women, while overlooking other types of exploitation. This is noteworthy, given...
The focus of this thesis is to design, characterize, and apply novel computational methods and molecular systems to interrogate heterogeneous human gut microbiome-related phenomena. In Chapter 2, I design, implement, and characterize a method for embedding co-occurrence patterns derived from massive 16s amplicon datasets. I use this method to 1....
Caspian terns (Hydroprogne caspia) and double-crested cormorants
(Phalacrocorax auritus) nest in large colonies on East Sand Island in the Columbia
River estuary, the largest known colonies for the two species in the world. Both
species of piscivorous colonial waterbirds have been identified as predators with a
significant impact on the...
Water samples along the Washington, Oregon and California coastline were collected using high resolution sampling and analyzed to determine particulate organic carbon and nitrogen concentrations. Over 28 days during August 2011, nearly 1500 samples were collected aboard the R/V Wecoma (W1108C) using a semi-automated filtration system. Additional subsurface samples were...
Continental shelf sediments are sinks for dissolved oxygen and sources of many major and minor nutrients required for oceanic surface primary production, resulting in a strong coupling between benthic and pelagic biogeochemical cycling. However, the influence and spatiotemporal variability of benthic remineralization on bottom-water chemistry and the supply of nutrients...
Small, mountainous river systems have been increasingly studied due to their importance as sources of fluvial sediment and organic matter to the coastal ocean. Thus far, studies of small, mountainous river systems have focused on rivers with very high sediment loads. The well-studied Eel River dispersal system in northern California...
Continental margin sediments have been recognized as a major source of dissolved iron to the global ocean. The focus of this study was to build an early diagenetic model that can be used to simulate iron fluxes from continental margins and thereby identify key controlling factors. The model uses the...
Soils contain the largest pool of carbon that is actively cycling on human timescales, leading many to view soils as a natural climate solution with multiple co-benefits. The field of soil science is rapidly evolving, but without a unified understanding of soil carbon dynamics. This dissertation leverages two distinct long-term...