A broad range of factors influence wine grape quality and manipulation of these factors has stimulated interest among grape growers, wine makers, and research scientists alike. One such factor affecting wine grape quality is crop level, particularly for Pinot noir. Since the capacity of a vine to ripen fruit depends...
Inflorescence Necrosis (IN) has been an unpredictable problem for grape growers in Oregon. The
industry has seen significant losses due to this fruit set disorder in several out of the eight years since its
first description in 1988, particularly in Pinot noir. Little is known of how to prevent the...
For this trial, established Pinot noir vines, located on the valley floor of the Umpqua Valley in Oregon
were used. In 1996 and 1997 sixteen vines trained to the Scott Henry trellising system were separated
into four different quadrants, determined by shoot orientation: Bottom canopy, shoots trained toward the
ground;...
Grafted grapevines will become increasingly important in Oregon vineyards in order to prevent loss of plants to phylloxera infestations. Several rootstocks are now being evaluated in Oregon for horticultural traits and characteristics related to wine quality. Resistance or tolerance to other plant diseases affecting grapevines needs to be examined as...
The objectives of this study are to isolate and characterize pathogenic agrobacteria that cause crown gall in grapevines and test hot water dips as a method for eradicating the infectious bacteria . Crown gall is commonly found among Oregon vineyards and the causative agent, Agrobacterium vitis, is known to be...
This is an integrated assessment across terrestrial, freshwater, and coastal marine realms. It includes the coast range of Oregon and Washington as well as Vancouver Island in British Columbia. The marine portion only includes the coastline and shallow subtidal; the next iteration will include the offshore component.
Models of magnetic and gravity anomalies along two E-W transects offshore central Oregon, one of which is coincident with a detailed velocity model, provide quantitative limits on the structure of the subducting oceanic crust and the crystalline backstop. The models indicate that the backstop-forming western edge of the Siletz terrane,...
Seamounts are ubiquitous features of the seafloor that form part of the fabric of oceanic crust. When a seamount enters a subduction zone, it has a major affect on forearc morphology, the uplift history of the island arc, and the structure of the downgoing slab. It is not known, however,...
Meanders of the shelf break front in the Mid-Atlantic Bight (MAB) during April and May of 1997 were associated with chlorophyll enhancement along a hydrographic and a topographic feature. The hydrographic feature was the surface outcrop of the front, which ranged from ~10 to >100 km seaward of the shelf...
The location of the Antarctic Polar Front (PF) was mapped over a 7-year period (1987-1993) within images of satellite-deprived sea surface temperature. The mean path of the PF is strongly steered by the topographic features of the Southern Ocean. The topography places vorticity constraints on the dynamics of the PF...
Aerobic oxidation is important in the cycling of methane in the sediments of Lake Washington. About half of the methane flux from depth is oxidized to CO, in the upper 0.7 cm of the sediments and the remainder escapes into the water column. In terms of the total carbon budget...
Branched glycerol dialkyl glycerol tetraethers (brGDGTs) of purportedly terrestrial origin are frequently detected in marine sediments, even in remote ocean sites where no direct impact from land erosion via rivers takes place. At these places, the most likely explanation for the presence of brGDGTs is in situ production or eolian...
A meaningful application of Mo as a paleo-redox proxy requires an understanding of Mo cycling in modern reducing environments. Stagnant euxinic basins such as the Black Sea are generally regarded as model systems for understanding euxinic systems during early Earth history. However, drawing direct parallels between the Black Sea and...
The seasonality of sea surface temperatures (SST) estimated from the alkenone-U[superscript K’]₃₇ index has been a debated issue since the development of the sediment trap time series data from 34 sampling locations, we show that the maximum alkenone flux in sediment traps varies markedly across the oceans, only on latitude...
We integrate micropaleontological and geochemical records (benthic stable isotopes, neodymium isotopes, benthic foraminiferal abundances and XRF-scanner derived elemental data) from well-dated Pacific Ocean successions (15-12.7 Ma) to monitor circulation changes during the middle Miocene transition into a colder climate mode with permanent Antarctic ice cover. Together with previously published records,...
Disease, overharvesting, and pollution have impaired the role of bivalves on coastal ecosystems, some to the point of functional extinction. An underappreciated function of many bivalves in these systems is shell formation. The ecological significance of bivalve shell has been recognized; geochemical effects are now more clearly being understood. A...
Considerable effort is presently being devoted to producing high-resolution sea surface temperature (SST) analyses with a goal of spatial grid resolutions as low as 1 km. Because grid resolution is not the same as feature resolution, a method is needed to objectively determine the resolution capability and accuracy of SST...
We investigated the export of particulate organic matter (POM) to the ocean by two contrasting small, mountainous rivers, the Umpqua and Eel Rivers, by collecting suspended sediment samples over a range of discharges and analyzing them for a variety of constituents, including organic carbon, nitrogen, biomarkers with distinct biochemical sources,...
Cyberinfrastructure integrates advanced computer, information, and communication technologies to empower computation-based and data-driven scientific practice and improve the synthesis and analysis of scientific data in a collaborative and shared fashion. As such, it now represents a paradigm shift in scientific research that has facilitated easy access to computational utilities and...
We present the geomorphology of the Eastern Samoa Volcanic Province, covering 28,446 km², and depths ranging from ~50-4000 m. A new compilation of available multibeam data reveals 51 previously undocumented seamounts, and delineates major submarine rift zones, eruptive centers, and volcanic plateaus. Moving from a regional to local scale, and...
Air particulate matter (PM) samples were collected from June 2006 to May 2007 for determination chemical elements. PM samples were taken in two size fractions (PM₂.₅ and PM₁₀) with MiniVolume air samplers on rooftops of various buildings (15-25 m above ground) in the city of Riyadh. The samples were subjected...
During rapid variations of the atmospheric mixing ratio of a trace gas, diffusive transport in the porous firn layer atop ice sheets and glaciers alters the isotopic composition of that gas relative to the overlying atmosphere. Records of past atmospheric trace gas isotopic composition from ice cores and firn need...
Density-independent and density-dependent variables both affect the spatial distributions of species. However, their effects are often separately addressed using different analytical techniques. We apply a spatially explicit regression framework that incorporates localized, interactive and threshold effects of both density-independent (water temperature) and density-dependent (population abundance) variables, to study the spatial...
Hydrological optics has a rich history, playing a significant role in physical, chemical, and biological oceanography. The success over the last 30 years has provided oceanographers with a non-invasive means to study regional and global scale physical, chemical, and biological processes (Figure 1). The ability to map the color of...
Concurrent satellite-measured chlorophyll (CHL), sea surface temperature (SST), sea level anomaly (SLA) and model-derived wind vectors from the 13+ year SeaWiFS period September 1997 – December 2010 quantify time and space patterns of phytoplankton variability and its links to physical forcing in the Pacific Ocean. The CHL fields are a...
We present a novel approach based on fibre-optic distributed temperature sensing (DTS) to measure the two-dimensional thermal structure of the surface layer at high resolution (0.25 m, ≈ 0.5 Hz). Air temperature observations obtained from a vertically oriented fibre optics array of approximate dimensions 8 m x 8 m and...
The early Pliocene warm phase was characterized by high sea surface temperatures and a deep thermocline in the eastern equatorial Pacific. A new hypothesis suggests that the progressive closure of the Panamanian seaway contributed substantially to the termination of this zonally symmetric state in the equatorial Pacific. According to this...
Climate changes in the Pacific Northwest, USA, may cause both retreat of alpine glaciers and increases in the frequency and magnitude of storms delivering rainfall at high elevations absent significant snowpack, and both of these changes may affect the frequency and severity of destructive debris flows initiating on the region's...
While neutral theory and models have stimulated considerable literature, less well investigated is the effect of topology on neutral metacommunity model simulations. We implemented a neutral metacommunity model using two different stream network topologies, a widely branched network (wide tree) and a narrowly branched network (high tree), both represented as...
A Coastal Web Atlas (CWA) is a valuable resource for a range of users including coastal managers as it provides easy access to maps, spatial data, coastal information and tools. A trans-Atlantic workshop on “Potentials and Limitations of Coastal Web Atlases”, held in Ireland in July 2006, brought together atlas...
We have applied a normalized difference algorithm to 8 day composite chlorophyll-a (CHL) and fluorescence line height (FLH) imagery obtained from the Moderate Resolution Imaging Spectroradiometer aboard the Aqua spacecraft in order to detect and monitor phytoplankton blooms in the Oregon coastal region. The resulting bloom products, termed CHL[subscript rel]...
In order to investigate how submarine weathering processes may affect the water balance of sediments at convergent plate margins, six sediment cores were retrieved off Central Chile at water depth between ∼800 and 4000 m. The sediment solid phase was analyzed for its major element composition and the pore fluids...
Packets of nonlinear internal waves (NLIWs) in a small area of the Mid-Atlantic Bight were 10 times more energetic during a local neap tide than during the preceding spring tide. This counterintuitive result cannot be explained if the waves are generated near the shelf break by the local barotropic tide...
A method is presented for estimating bathymetry in a river, based on observations of depth-averaged velocity during steady flow. The estimator minimizes a cost function that combines known information in the form of a prior estimate and measured data (including measurement noise). State augmentation is used to relate the measured...
Interaction between mixed layer baroclinic eddies and small-scale turbulence is studied using a nonhydrostatic large-eddy simulation (LES) model. Free, unforced flow evolution is considered, for a standard initialization consisting of an 80-m-deep mixed layer with a superposed warm filament and two frontal interfaces in geostrophic balance, on a model domain...
Understanding groundwater conditions in the upland parts of volcanic island aquifers is critical for sustainable groundwater development in these resource-limited environments. Yet groundwater conditions in such settings are generally difficult to characterize because of sparse well drilling (high cost and/or limited access). Information needed for resource evaluation includes upland depth...
Oyster shell is a crucial component of healthy oyster reefs. Shell planting has been a main component of oyster restoration efforts in many habitats and has been carried out on scales from individual and grassroots efforts to multiagency efforts across entire estuaries. However, the cycling and lifetime of the shell...
Sensor design and mission planning for satellite ocean color measurements requires careful consideration of the signal dynamic range and sensitivity (specifically here signal-to-noise ratio or SNR) so that small changes of ocean properties (e.g., surface chlorophyll-a concentrations or Chl) can be quantified while most measurements are not saturated. Past and...
Using stable isotope analyses of N and C we present preliminary evidence of marine-derived nutrients from introduced Chinook salmon (Oncorhynchus tshawytscha Walbaum) in stream food webs of Laguna Los Patos, NW Patagonia. Similar to values reported within Chinook salmon's native distributional range periphyton and aquatic insects are the trophic levels...
Kelvin-Helmholtz (KH) instability, characterized by the distinctive finite-amplitude billows it generates, is an important mechanism in the development of turbulence in the stratified interior of the ocean. In particular, it is often assumed that the onset of turbulence in internal waves begins in this way. Clear recognition of the importance...
Lagrangian equations for momentum and buoyancy are developed for idealized turbulent fluid elements. The resulting formulation of transport can he viewed as a generalization of mixing length and parcel theories of mixing for application to gridded Eulerian models. This formulation of transport recognizes the mean gradients on the scale of...
Data from three micronetworks with eddy correlation data and three additional micronetworks without eddy correlation data are analyzed to study the spatial variability of surface air temperature in complex terrain. A simple similarity relationship is constructed to relate the spatial variation of air temperature along the slope to the thermal...
Wind-generated inertial currents can radiate from the mixed layer as horizontally and vertically propagating new-inertial internal gravity waves. To study the timescale of the decay of mixed layer energy and the magnitude of the energy transfer to the ocean below, the authors developed a numerical, linear model on a β...
Motivated by satellite altimeter observations of enhanced sea level variability near steep topographic slopes in the Southern Ocean, effects of topography on the spatial distribution of mesoscale eddies and on eddy–mean flow interaction are investigated using a two-layer, wind-forced, quasigeostrophic channel model. The principal topography, a zonal ridge with a...
Observations of sea surface temperature and wave height were made from a large, manned spar buoy (R/P FLIP) ~100 km off the coast of Baja California. Surface temperature was measured with a radiation thermometer which viewed a disc on the surface 12 cm in diameter. The instrument responded to frequencies...
Observations of oppositely directed, monthly mean alongshore currents and wind stress over the continental margin off the Pacific coast of North America motivate the theoretical examination of mean flow generation by topographic lee-wave drag. We formulate a barotropic model for wind-forced shelf-slope flow over variable topography. Our central objective is...
A simple theory is presented for steady geostrophic circulation of a stratified fluid in a rectangular basin with a circumpolar connection. The interior flow obeys the β-plane Sverdrup vorticity balance, and the circulation is closed by geostrophic boundary currents. The circulation is forced by surface thermal gradients and wind-driven Ekman...
The equatorial front in the eastern Pacific Ocean observed during 14 October–7 December, 1971, from R/V Yaquina of Oregon State University is discussed. The front is clearly defined at the sea surface by a large horizontal gradient of temperature, salinity, σt and nitrate. Equatorial upwelling, which is believed to be...
Subsurface temperature data and surface meteorological data are analyzed from thermistor chain moorings deployed near 50°N, 140°W during the Storm Transfer and Response Experiment (STREX). The upper-ocean heat and potential energy (PE) contents to 90 m are examined for an 18-day period and their changes compared to the sources and...
A series of profiles of velocity microstructure along 152°E in the western North Pacific Ocean were collected in May–June 1982. Large, averaged turbulent dissipation rates, ϵ, found in the main thermocline (400 to 1000 m) were determined by a combination of large independent estimates of ϵ and a greater rate...
Appearing in this issue of the Journal of Physical Oceanography are three papers that present new observations of a distinct, narrow band, and diurnally varying signal in temperature records obtained in the low Richardson number shear flow above the core of the equatorial undercurrent. Moored data suggest that the intrinsic...
We undertook an interlaboratory comparison of techniques used to extract and analyze trapped gases in ice cores. The intercomparison included analyses of standard reference gases and samples of ice from the Greenland Ice Sheet Project 2 (GISP2) site. Concentrations of CO₂, CH₄, the δ¹⁸O of O₂, the δ¹⁵N of N₂,...
The Holocene portion of the Siple Dome (Antarctica) ice core was
dated by interpreting the electrical, visual and chemical properties of the
were interpreted manually and with a computer algorithm.The algorithm
was adjusted to be consistent with atmospheric methane stratigraphic
(Greenland Ice Sheet Project 2) ice core, ¹⁰Be stratigraphic ties...
The oceanic circulation near the eastern margin of the African continent is dominated by the poleward flow of the Agulhas Current. The Agulhas Current separates from the African coast near the southern tip of the continent, makes an abrupt turn to the east (known as the Agulhas Retroflection), and flows...
Atmospheric surface layer turbulent statistics measured during the Barbados Oceanographic and Meteorological Experiment 8 and 30 m above mean sea level are presented. The budget equations of turbulent kinetic energy, humility variance and temperature variance are examined. Within discussed limitations it is concluded that production equals dissipation in the case...
Datasets taken near the coasts of Peru and California have been analyzed to explore the evidence of a correlation between the high frequency (period < 10.8 hour) and low frequency (period > 4 day) motions. A large part of the high frequency current is consistent with internal wave dynamics. They...
Direct numerical simulations (DNS) of a shear layer with salt-fingering-favorable stratification have been performed for different Richardson numbers Ri and density ratios R[subscript]p. In the absence of shear (Ri = oo), the primary instability is square planform salt fingering, alternating cells of rising and sinking fluid. In the presence of...
Influenza A incidence peaks during winter in temperate regions. The basis for this pronounced seasonality is not understood, nor is it well documented how influenza A transmission principally occurs. Previous studies indicate that relative humidity (RH) affects both influenza virus transmission (IVT) and influenza virus survival (IVS). Here, we reanalyze...
Observations of the hydrographic regime over the continental shelf off Oregon from the R/V Yaquina during the summer of 1972 showed the presence of an alongshore, subsurface ribbon of relatively cool water. Its properties and its evolution during the 1972 season are described. Examination of earlier observations showed that evidence...
The European Centre for Medium-Range Weather Forecasts (ECMWF) and Institut Francais Pour la Recherche et l’Exploitation de la Mer European Remote-Sensing Satellite, named IFR2, surface wind velocity data products are compared during July 1995 over the Arabian Sea. Substantial differences were found. The central positions of the maximum isotach were...
Two-dimensional, primitive equation model studies of wind-forced flow over a continental shelf Show that, under upwelling conditions, high levels of near-inertial wave energy are found in the interior over the shelf. The regions of elevated wave energy, with maximum wave amplitudes of around ±0.2 m s⁻¹, persist for up to...
An improved bound is obtained for the radius of the semicircle in the complex plane containing the complex phase speed of baroclinically unstable plane wave disturbances. In the limit of long waves, this bound contains a term increasing with β and decreasing with the mean stratification (i.e., decreasing with the...
The generalized inverse is constructed for a nonlinear, single-layer quasigeostrophic model, together with initial conditions and a finite number of interior data. With the exception of doubly Periodic boundary condition all constraints are weak. The inverse minimizes a penalty functional that is quadratic in the errors in prior estimates of...
Analysis of simulations performed with the NASA/Ames Mars GCM shows that under dusty conditions the Northern Hemisphere winter solstice circulation becomes characterized by a zonally averaged state in which the potential vorticity at upper levels is very small outside of high latitudes. The available observational data-in particular the 15-µm observations...
The initiation of ice in an isolated orographic wave cloud was compared with expectations based on ice nucleating aerosol concentrations and with predictions from new ice nucleation parameterizations applied in a cloud parcel model. Measurements of ice crystal number concentrations were found to be in good agreement both with measured...
As part of a program to improve understanding of the dynamics of the complicated, vigorous eddy and jet flow fields recently observed over the continental shelf and slope, we investigate the potential of intermediate models for use in both process and data assimilation studies of these flows. Intermediate models incorporate...
Motivated by the general objective of pursuing oceanographic process and data assimilation studies of the complex, nonlinear eddy and jet current fields observed over the continental shelf and slope off the west coast of the United States, we investigate the use of intermediate models for that purpose. Intermediate models contain...
The authors reconsider the problem of estimating the sensible heat transfer at the earth's surface from direct measurements of turbulent fluxes in the atmospheric boundary layer. For simplicity, only horizontally homogeneous conditions are considered for a thin atmospheric layer containing no liquid water, adjacent to the earth's ground surface. Applying...
The vertical structure of coastal-trapped disturbances in several idealized models of a stably stratified lower atmosphere is examined. The vertical structure and phase speeds of the trapped modes depend on the resting stratification and the height of the orographic step. The presence of a stable layer above the boundary layer...
Global 1° × 1° climatologies of the first baroclinic gravity-wave phase speed c¹ and the Rossby radius of deformation λ1 are computed from climatological average temperature and salinity profiles. These new atlases are compared with previously published 5° × 5° coarse resolution maps of λ₁ for the Northern Hemisphere and...
Bulk aerodynamic formulas are applied to meteorological data from low-altitude aircraft flights to observational estimates of the subgrid enhancement of momentum, sensible heat, and latent heat the atmospheric–oceanic boundary in light wind, fair weather conditions during TOGA COARE Global Atmosphere Coupled Ocean–Atmosphere Response Experiment). Here, subgrid enhancement the contributions of...
A strong, isolated October storm generated 0.35–0.7 m s⁻¹ inertial frequency currents in the 40-m deep mixed layer of a 300 km×300 km region of the northeast Pacific Ocean. The authors describe the evolution of these currents and the background flow in which they evolve for nearly a month following...
Although the process of restratification of the ocean surface layer at the equator following nighttime convection is similar in many ways to the process at midlatitudes, there are important differences. A composite day calculated from 15 days of consistent conditions at 140°W on the equator was compared with midlatitude observations...
This study examines the bulk aerodynamic method for estimating surface fluxes of heat and moisture using the surface radiative temperature. The surface radiative temperature is often the only available surface temperature from field measurements. Models typically predict heat fluxes from the surface radiative temperature computed from the surface energy balance....
Climate regime shifts force fish communities through rapid transitions between alternate species assemblages, but little is known about the role that biochemical ecology plays in these transitions. We document a biochemical effect of climate-induced community transitions in boreal oceans: opposite population trajectories of lipid-rich and lipid-poor fish species. We compared...
Fluctuations of the low frequency sound field in the presence of an internal solitary wave packet during the Shallow Water ’06 experiment are analyzed. Acoustic, environmental, and on-board ship radar image data were collected simultaneously before, during, and after a strong internal solitary wave packet passed through the acoustic track....
Preliminary results are presented from an analysis of mid-frequency acoustic transmission data collected at range 550m during the Shallow Water 2006 Experiment. The acoustic data were collected on a vertical array immediately before, during, and after the passage of a nonlinear internal wave on 18 August, 2006. Using oceanographic data...
Conductivity‐temperature‐depth surveys during 1988 encountered strong baroclinic jets that were evident in acoustic Doppler current profiler and hydrographic data. During June and July 1988 a filament with high surface nitrate, high chlorophyll, abundant populations of neritic centric diatoms, and higher rates of primary production was evident perpendicular to the coast...
Broadband body waves recorded at 15 digital seismic stations worldwide are used to study the rupture process of the May 23, 1989 Macquarie Ridge earthquake. The centroidal solution (strike 211°, dip 86°, rake 180°, and depth of 10 km below the seafloor) indicates shallow rupture with pure right-lateral strike-slip motion...
The diffuse irradiance of slopes relative to the diffuse irradiance of a horizontal surface is calculated by integrating the mean radiance distributions of cloudless skies in Britain for a wide range of solar elevations, azimuths and slope angles. There is reasonable agreement with measurements reported from a number of stations;...
A new method is presented for estimating the vertical turbulent heat flux at the bottom of the daily mixed layer from the temperature data in the mixed layer and net solar irradiance data at the sea surface. We assume that fluctuations in the divergence of advective heat flux have longer...
Monte Carlo simulations are carried out to determine the error in the inversion of backscattering from remotely sensed reflectance when geometrical shape factors of the light field are assumed to be unity. The results show that error in backscattering inversion can vary from a 40% overestimation to a 20% underestimation...
A form of the linear, inviscid shallow water wave equation which includes alongshore uniform, but cross-shore variable, longshore currents and bathymetry is presented. This formulation provides a continuum between gravity waves (either leaky or edge waves) on a longshore current, and the recently discovered shear waves. In this paper we...
Chemical and biological sensor technologies have advanced rapidly in the past five years. Sensors that require low power and operate for multiple years are now available for oxygen, nitrate, and a variety of bio-optional properties that serve as proxies for important components of the carbon cycle (e.g., particulate organic carbon)....