Aim C-4 grasses are distinct from C-3 grasses, because C-4 grasses respond in a different manner to light, temperature, CO2 and nitrogen and often have higher resource-use efficiencies. C-3 and C-4 grasses are typically represented in earth system models (ESMs) by different plant functional types (PFTs). The ability of ESMs...
We propose a time dependent Eulerian model for sea surface entrainment, buoyancy transport and droplet dynamics of ocean oil. The model captures the microscale vertical oil mass exchanges in the neighborhood of the sea surface. This model is in turn part of an oil fate model designed to capture oil...
Objectives
A growing body of research has found that healthcare discrimination is a significant barrier in accessing healthcare among Latino patients. Despite evidence of the effects of perceived discrimination among Latinos, psychometric testing of scales used in previous research is limited. The present study explored the psychometric properties of a...
Whether CaCO₃ dissolves within the top centimeters of marine sediments overlaid by deep, supersaturated bottom waters remains an area of debate in geochemistry. This uncertainty stems from the fact that different methods used to assess CaCO₃ dissolution rates often provide what appear to be profoundly different results. Here we combine...
In recent years the conservation community has engaged in debate over value in nonhuman nature, especially as it relates to motivations for conservation. Many have expressed the assumption that more people are willing to support conservation when emphasis is placed on the human benefits of nonhuman nature, rather than the...
Recognisable debris from the Great Tōhoku Earthquake and Tsunami of March 2011 began arriving on the coasts of Oregon and Washington, USA in June 2012. This debris often carried fouling Japanese marine algae, and there was concern that these species might recruit and invade northeast Pacific shores. From June 2012...
The influence of the flood pulse on fish populations has been posited, but infrequently tested or quantified. Here, we tested the effect of habitat on population size, using Prochilodus nigricans as a case study species. Floodplain habitat was based on the littoral zone area occupied by P. nigricans to feed....
Biomass gasification is a promising way to obtain green energy, but the gas composition makes it unsuitable for use in traditional technologies (i.e., IC engine). Gas purification over nickel and/or iron catalysts is an attractive alternative. Cellulose-based carbon aerogels (CAGs) have shown suitable physical chemical properties for use as catalyst...
Carnivore predation on livestock often leads people to retaliate. Persecution by humans has contributed strongly to global endangerment of carnivores. Preventing livestock losses would help to achieve three goals common to many human societies: preserve nature, protect animal welfare, and safeguard human livelihoods. Between 2016 and 2018, four independent reviews...
The objectives of this study were to evaluate the performance of wood-frame shear walls under monotonic and cyclic loads by: 1) determining variability of shear wall performance; 2) comparing performance of walls under each loading protocol; 3) evaluating effects of anchorage on wall perfor-mance; and 4) evaluating performance of walls...
During traditional boat-based surveys of marine megafauna, behavioral observations are typically limited to records of animal surfacings obtained from a horizontal perspective. Achieving an aerial perspective has been restricted to brief helicopter or airplane based observations that are costly, noisy, and risky. The emergence of commercial small unmanned aerial systems...
Commercial fishing is deeply embedded in the economy and culture of many communities on the Oregon coast. Recent economic, environmental, and regulatory changes impacting fisheries have exacerbated the need to investigate the relationship between the commercial fishing industry and their host communities. The objective of this study is to examine...
This study investigates the use of a mobile application, Whale mAPP, as a citizen science tool for collecting marine mammal sighting data. In just over three months, 1261 marine mammal sightings were observed and recorded by 39 citizen scientists in Southeast Alaska. The resulting data, along with a preliminary and...
Ecotourism is a movement that seeks to sustain local communities by uniting conservation, travel, and education. To minimize effects on animal behavior, ecotourism operations must be carefully managed. Local management efforts that can be tailored to the specific area and animals may be more successful than broad‐scale efforts that may...
Pyrosomes are colonial pelagic tunicates that have fascinated marine biologists for over a century. Their name comes from the “fiery” bioluminescence that luminous organs produce at night time. Blooms of pyrosomes, identified as Pyrosoma atlanticum (Peron, 1804), have recently appeared in the North Pacific Ocean, prompting questions about environmental factors...
Understanding larval bivalve responses to variable regimes of seawater carbonate chemistry requires realistic quantification of physiological stress. Based on a degree-day modeling approach, we developed a new metric, the ocean acidification stress index for shellfish (OASIS), for this purpose. OASIS integrates over the entire larval period the instantaneous stress associated...
Marine macrophyte wrack (macroalgae and seagrasses) frequently washes onto beaches but little is known about the factors controlling its biogeographic variability. We report on a large-scale study of macrophyte wrack deposition patterns on the US Pacific Northwest coast. We measured macrophyte wrack on 12 sandy beach sites from southern Washington...
The dataset here is used as a document file for presenting supplementary videos in the dissertation Tao, K. (2018). Investigating protein-lipid-membrane interactions in Plant Cells using Bimolecular Fluorescence Complementation (Doctoral dissertation).
Keywords: Protein, Lipid, Membrane, Plant Cells, Fluorescent Imaging
Many marine mammal predators, particularly pinnipeds, have increased in abundance in recent decades, generating new challenges for balancing human uses with recovery goals via ecosystem-based management. We used a spatio-temporal bioenergetics model of the Northeast Pacific Ocean to quantify how predation by three species of pinnipeds and killer whales (Orcinus...
Consultation is increasingly viewed as a critical factor in renewable energy development, including ocean energy (OE) development. Failure to consult the community and other stakeholders and failure to employ the appropriate methods for consultation will, in many instances, impact the successful development and implementation of the OE project. This chapter...
As an emerging industry, ocean energy (OE) is expected to play a major contributory role to reach long-term global emissions reductions targets. The offshore environment has become the new frontier for renewable energy production with many high-capacity wind parks and other technologies such as tidal and wave energy being increasingly...
The influence of pH on phytoplankton physiology is an important facet of the body of research on ocean acidification. We provide data developed during the design and implementation of a novel pHstat system capable of maintaining both static and dynamic pH environments in a laboratory setting. These data both help...
Laboratory investigations of physiological processes in phytoplankton require precise control of experimental conditions. Chemostats customized to control and maintain stable pH levels (pHstats) are ideally suited for investigations of the effects of pH on phytoplankton physiology, for example in context of ocean acidification. Here we designed and constructed a simple,...
The near-term progression of ocean acidification (OA) is projected to bring about sharp changes in the chemistry of coastal upwelling ecosystems. The distribution of OA exposure across these early-impact systems, however, is highly uncertain and limits our understanding of whether and how spatial management actions can be deployed to ameliorate...
Koi herpesvirus (KHV) is highly pathogenic to Cyprinus carpio. KHV can also become latent in recovered fish and reactivate from latency under stressful conditions. Understanding KHV latency is important for development of strategies against herpesvirus latent infection. Our previous studies found KHV ORF6 mRNA is detectable during latent infection. In...
Cyprinid herpesvirus 1 (CyHV1) infects all scaled and color varieties of common carp Cyprinus carpio, including koi. While it is most often associated with unsightly growths known as ‘carp pox,’ the underlying lesion (epidermal hyperplasia) can arise from a variety of disease processes. CyHV1-induced epidermal hyperplasia may occur transiently in...
Koi herpesvirus (KHV) is a highly pathogenic virus of common carp and koi. KHV becomes latent in recovered koi or exposed koi without symptoms, and the latent infection can reactivate under stress conditions. KHV reactivation from latency often occurs when water temperature rapidly rises above 17 °C. Dissolved O2 is...
Worldwide, in recent years capture fisheries targeting lower-trophic level forage fish and euphausiid crustaceans have been substantial (∼20 million metric tons [MT] annually). Landings of forage species are projected to increase in the future, and this harvest may affect marine ecosystems and predator-prey interactions by removal or redistribution of biomass...
Fisheries-related mortality has been influential in driving global declines in seabird populations. Understanding the overlap between seabird distribution and fisheries is one important element in assessing bycatch risk, and may be achieved by tracking the movements of individual birds and fishing vessels. Here, we assess the spatiotemporal overlap between the...
Recent studies have demonstrated that some hormones are present in baleen powder from bowhead (Balaena mysticetus) and North Atlantic right (Eubalaena glacialis) whales. To test the potential generalizability of this technique for studies of stress and reproduction in large whales, we sought to determine whether all major classes of steroid...
The dynamic nature of most environments forces many animals to move to meet their fundamental needs. This is especially true in aquatic environments where shifts in spatial ecology (which are a result of movements) are among the first adaptive responses of animals to changes in ecosystems. Changes in the movement...
Research on cetacean foraging ecology is central to our understanding of their spatial and behavioral ecology. Yet, functional mechanisms by which cetaceans detect prey across different scales remain unclear. Here, I postulate that cetaceans utilize a scale-dependent, multimodal sensory system to assess and increase prey encounters. I review the literature...
Using a combination of population‐ and individual‐based analytical approaches, we provide a comprehensive examination of genetic connectivity of Dungeness crab (Cancer magister) along ~1,200 km of the California Current System (CCS). We sampled individuals at 33 sites in 2012 to establish a baseline of genetic diversity and hierarchal population genetic...
Limited approaches exist for studying population connectivity in widely dispersing marine benthic invertebrates. Genetic techniques can provide important insights toward identifying recruitment trajectories. Here, 10 microsatellite loci were used to examine connectivity among Oregon Dungeness crabs (Cancer magister, Dana, 1852) in the California Current System (CCS) (n = 801) as...
The M9 Cascadia subduction zone earthquake represents one of the most pressing natural hazard threats in the Pacific Northwest of the USA with an astonishing high 7–12% chance of occurrence by 2060, mirroring the 2011 devastating earthquake and tsunami in Japan. Yet this region, like many other coastal communities, is...
Bird scaring lines (BSLs) protect longline fishing gear from seabird attacks, save bait, reduce incidental seabird mortality and are the most commonly prescribed seabird bycatch mitigation measure worldwide. We collaborated with fishermen to assess the efficacy of applying BSL regulations from the demersal longline sablefish fishery in Alaska to a...
Two species of burrowing shrimp occur in high densities in US West Coast estuaries, the ghost shrimp, Neotrypaea californiensis, and the blue mud shrimp, Upogebia pugettensis. Both species of shrimp are considered ecosystem engineers as they bioturbate and irrigate extensive galleries within the sediment. While their burrows comprise a dominant...
Understanding connectivity of marine organisms is necessary for determining the appropriate scale of conservation and management strategies. For species that inhabit both the coastal ocean and partially enclosed water bodies (i.e., estuaries or fjords), this information is even more critical since estuaries and fjords are often characterized by hydrological complexities...
Understanding the factors that control predation in pelagic communities can inform predictions of community structure in marine ecosystems. Ubiquitous and selective predators such as cnidarian hydromedusae rely on their nematocysts to capture and retain prey but it is not clear how the density and spatial distribution of these cells relate...
Models that seek to predict environmental variables invariably demonstrate bias when compared to observations. Bias correction (BC) techniques are common in the climate and hydrological modeling communities, but have seen fewer applications to the field of wave modeling. In particular there has been no investigation as to which BC methodology...
Rebuilding of some U.S. West Coast rockfish (Sebastes spp.) stocks relies heavily on mandatory fishery discard, however the long-term condition of discarded fish experiencing capture-related barotrauma is unknown. We conducted two studies designed to evaluate delayed mortality, physical condition,and behavioral competency of yelloweye rockfish, Sebastes ruberrimus, experiencing barotrauma during capture...
Juvenile salmonids display highly variable spatial and temporal patterns of early dispersal that are influenced by density-dependent and density-independent factors.
Although juvenile coho salmon (Oncorhynchus kisutch) movement patterns in streams and their relationship with body mass and growth have been examined in previous studies, most observations were limited to one...
Since the decimation of the southern right
whale Eubalaena australis population in New Zealand by
whaling, research on its recovery has focused on the wintering
ground at the Auckland Islands, neglecting potentially
important wintering habitat at Campbell Island. For
the first time in 20 years we conducted an expedition to...
Periodic weighing of seabird chicks is labour-intensive and repeated handling can cause high levels of disturbance to chicks. Although automatic weighing systems using a fibreglass nest have been designed for albatross species with a pedestal nest made of mud, this approach is inappropriate for great albatross species (genus Diomedea) whose...
Streams that dry during part of the year are common throughout the world, yet studies of the macroinvertebrate assemblages in these types of streams are rare compared to those in permanent streams; and studies that assess the effects of agriculture on temporary stream invertebrates are even rarer. We studied macroinvertebrate...
Managing multiple ecosystem services (ESs) across landscapes presents a central challenge for ecosystem-based management, because services often exhibit spatiotemporal variation and weak associations with co-occurring ESs. Further focus on the mechanistic relationships among ESs and their underlying biophysical processes provides greater insight into the causes of variation and covariation among...
Marine microbes exhibit highly varied, often non-spherical shapes that have functional significance for essential processes, including nutrient acquisition and sinking rates. There is a surprising absence of data, however, on how cell shape affects grazing, which is crucial for predicting the fate of oceanic carbon. We used synthetic spherical and...
Identification and classification of behavior states in animal movement data can be complex, temporally biased, time-intensive, scale-dependent, and unstandardized across studies and taxa. Large movement datasets are increasingly common and there is a need for efficient methods of data exploration that adjust to the individual variability of each track. We...
Coastal communities are increasingly experiencing climate change–induced coastal disasters and chronic flooding and erosion. Decision makers and the public alike are struggling to reconcile the lack of ‘‘fit’’ between a rapidly changing environment and relatively rigid governance structures. In efforts to bridge this environment-governance gap in Tillamook County, Oregon, stakeholders...
Mucous-mesh grazers (pelagic tunicates and thecosome pteropods) are common in oceanic waters and efficiently capture, consume and repackage particles many orders of magnitude smaller than themselves. They feed using an adhesive mucous mesh to capture prey particles from ambient seawater. Historically, their grazing process has been characterized as non-selective, depending...