Index Catalog // ScholarsArchive@OSU

Soil Matters: Improving Forest Landscape Planning and Management for Diverse Objectives with Soils Information and Expertise

Creator:: Craigg, Terry L., Adams, Paul W., and Bennett, Karen A.
Abstract:: Most forest managers would agree that soils are a fundamental resource of forestlands, yet many planning and management decisions continue to be made without a detailed and spatially explicit understanding of this unique and vital resource. We discuss the value of soil data and interpretations in forest planning. We emphasize...
Resource Type:: Article
Full Text:: ., Adams, P. W., & Bennett, K. A. (2015). Soil Matters: Improving Forest Landscape Planning and Management

Rapid Quantification of Soilborne Pathogen Communities in Wheat-based Long-term Field Experiments

Creator:: Smiley, Richard W., Machado, Stephen, Rhinhart, Karl E. L., Reardon, Catherine L., and Wuest, Stewart B.
Abstract:: This is an author's peer-reviewed final manuscript, as accepted by the publisher. The published article is copyrighted by The American Phytopathological Society and can be found at: https://doi.org/10.1094/PDIS-09-15-1020-RE
Resource Type:: Article
Full Text:: University, Columbia Basin Agricultural Research Center, P.O. Box 370, Pendleton, OR 97801; and Catherine L

Epigenetic remodeling in B-cell acute lymphoblastic leukemia occurs in two tracks and employs embryonic stem cell-like signatures

Creator:: Lee, Seung-Tae, Muench, Marcus O., Fomin, Marina E., Xiao, Jianqiao, Zhou, Mi, de Smith, Adam, Martín-Subero, José I., Heath, Simon, Houseman, E. Andres, Roy, Ritu, Wrensch, Margaret, Wiencke, John, Metayer, Catherine, and Wiemels, Joseph L.
Abstract:: We investigated DNA methylomes of pediatric B-cell acute lymphoblastic leukemias (B-ALLs) using whole-genome bisulfite sequencing and high-definition microarrays, along with RNA expression profiles. Epigenetic alteration of B-ALLs occurred in two tracks: de novo methylation of small functional compartments and demethylation of large intercompartmental backbones. The deviations were exaggerated in lamina-associated...
Resource Type:: Article

Comparative Composition, Diversity and Trophic Ecology of Sediment Macrofauna at Vents, Seeps and Organic Falls

Creator:: Bernardino, Angelo F., Levin, Lisa A., Thurber, Andrew R., and Smith, Craig R.
Abstract:: Sediments associated with hydrothermal venting, methane seepage and large organic falls such as whale, wood and plant detritus create deep-sea networks of soft-sediment habitats fueled, at least in part, by the oxidation of reduced chemicals. Biological studies at deep-sea vents, seeps and organic falls have looked at macrofaunal taxa, but...
Resource Type:: Article
Full Text:: and Citation: Bernardino AF, Levin LA, Thurber AR, Smith CR (2012) Comparative Composition, Diversity

Roles of brca2 (fancd1) in Oocyte Nuclear Architecture, Gametogenesis, Gonad Tumors, and Genome Stability in Zebrafish

Creator:: Rodriguez-Mari, Adriana, Wilson, Catherine, Titus, Tom A., Canestro, Cristian, BreMiller, Ruth A., Yan, Yi-Lin, Nanda, Indrajit, Johnston, Adam, Kanki, John P., Gray, Erin M., He, Xinjun, Spitsbergen, Jan, Schindler, Detlev, and Postlethwait, John H.
Abstract:: Mild mutations in BRCA2 (FANCD1) cause Fanconi anemia (FA) when homozygous, while severe mutations cause common cancers including breast, ovarian, and prostate cancers when heterozygous. Here we report a zebrafish brca2 insertional mutant that shares phenotypes with human patients and identifies a novel brca2 function in oogenesis. Experiments showed that...
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Full Text:: , Catherine Wilson1, Tom A. Titus1, Cristian Cañestro1¤, Ruth A. BreMiller1, Yi- Lin Yan1, Indrajit Nanda2

Global solutions to regional problems : collecting global expertise to address the problem of harmful cyanobacterial blooms. A Lake Erie case study

Creator:: Bullerjahn, George S., McKay, Robert M., Davis, Timothy W., Baker, David B., Boyer, Gregory L., D’Anglada, Lesley V., Doucette, Gregory J., Ho, Jeff C., Irwin, Elena G., Kling, Catherine L., Kudela, Raphael M., Kurmayer, Rainer, Michalak, Anna M., Ortiz, Joseph D., Otten, Timothy G., Paerl, Hans W., Qin, Boqiang, Sohngen, Brent L., Stumpf, Richard P., Visser, Petra M., and Wilhelm, Steven W.
Abstract:: In early August 2014, the municipality of Toledo, OH (USA) issued a ‘do not drink’ advisory on their water supply directly affecting over 400,000 residential customers and hundreds of businesses (Wilson, 2014). This order was attributable to levels of microcystin, a potent liver toxin, which rose to 2.5 μg L⁻¹...
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Full Text:: , Catherine L. Kling j, Raphael M. Kudela k, Rainer Kurmayer l, Anna M. Michalak h, Joseph D. Ortizm, Timothy

In situ enrichment of ocean crust microbes on igneous minerals and glasses using an osmotic flow‐through device

Creator:: Smith, Amy, Popa, Radu, Fisk, Martin, Nielsen, Mark, Wheat, C. Geoffrey, Jannasch, Hans W., Fisher, Andrew T., Becker, Keir, Sievert, Stefan M., and Flores, Gilberto
Abstract:: The Integrated Ocean Drilling Program (IODP) Hole 1301A on the eastern flank of Juan de Fuca Ridge was used in the first long-term deployment of microbial enrichment flow cells using osmotically driven pumps in a subseafloor borehole. Three novel osmotically driven colonization systems with unidirectional flow were deployed in the...
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Full Text:: minerals and glasses using an osmotic flow‐through device Amy Smith and Radu Popa Department of Biology

Herbicide Resistance: Toward an Understanding of Resistance Development and the Impact of Herbicide-Resistant Crops

Creator:: Vencill, William K., Nichols, Robert L., Webster, Theodore M., Soteres, John K., Mallory-Smith, Carol, Burgos, Nilda R., Johnson, William G., and McClelland, Marilyn R.
Abstract:: Development of herbicide-resistant crops has resulted in significant changes to agronomic practices, one of which is the adoption of effective, simple, low-risk, crop-production systems with less dependency on tillage and lower energy requirements. Overall, the changes have had a positive environmental effect by reducing soil erosion, the fuel use for...
Resource Type:: Article
Full Text:: . Webster, John K. Soteres, Carol Mallory-Smith, Nilda R. Burgos, William G. Johnson, and Marilyn R

A comprehensive approach for habitat restoration in the Columbia Basin

Creator:: Rieman, Bruce E., Smith, Courtland L., Naiman, Robert J., Ruggerone, Gregory T., Wood, Christ C., Huntly, Nancy, Merril, Erik N., Alldredge, J. Richard, Bisson, Peter A., Congleton, James, Fausch, Kurt D., Levings, Colin, Pearcy, William, Scarnecchia, Dennis, and Smouse, Peter
Abstract:: The Columbia Basin once supported a diversity of native fishes and large runs of anadromous salmonids that sustained substantial fisheries and cultural values. Extensive land conversion, watershed disruptions, and subsequent fishery declines have led to one of the most ambitious restoration programs in the world. Progress has been made, but...
Resource Type:: Article
Full Text:: , B. E., Smith, C. L., Naiman, R. J., Ruggerone, G. T., Wood, C. C., Huntly, N., ... & Smouse, P

Averting biodiversity collapse in tropical forest protected areas

Creator:: Laurance, William F., Useche, D. Carolina, Rendeiro, Julio, Kalka, Margareta, Bradshaw, Corey J. A., Sloan, Sean P., Laurance, Susan G., Campbell, Mason, Abernethy, Kate, Alvarez, Patricia, Arroyo-Rodriguez, Victor, Ashton, Peter, Benitez-Malvido, Julieta, Blom, Allard, Bobo, Kadiri S., Cannon, Charles H., Cao, Min, Carroll, Richard, Chapman, Colin, Coates, Rosamond, Cords, Marina, Danielsen, Finn, De Dijn, Bart, Dinerstein, Eric, Donnelly, Maureen A., Edwards, David, Edwards, Felicity, Farwig, Nina, Fashing, Peter, Forget, Pierre-Michel, Foster, Mercedes, Gale, George, Harris, David, Harrison, Rhett, Hart, John, Karpanty, Sarah, Kress, W. John, Krishnaswamy, Jagdish, Logsdon, Willis, Lovett, Jon, Magnusson, William, Maisels, Fiona, Marshall, Andrew R., McClearn, Deedra, Mudappa, Divya, Nielsen, Martin R., Pearson, Richard, Pitman, Nigel, van der Ploeg, Jan, Plumptre, Andrew, Poulsen, John, Quesada, Mauricio, Rainey, Hugo, Robinson, Douglas, Roetgers, Christiane, Rovero, Francesco, Scatena, Frederick, Schulze, Christian, Sheil, Douglas, Struhsaker, Thomas, Terborgh, John, Thomas, Duncan, Timm, Robert, Urbina-Cardona, J. Nicolas, Vasudevan, Karthikeyan, Wright, S. Joseph, Arias-G, Juan Carlos, Arroyo, Luzmila, Ashton, Mark, Auzel, Philippe, Babaasa, Dennis, Babweteera, Fred, Baker, Patrick, Banki, Olaf, Bass, Margot, Bila-Isia, Inogwabini, Blake, Stephen, Brockelman, Warren, Brokaw, Nicholas, Bruehl, Carsten A., Bunyavejchewin, Sarayudh, Chao, Jung-Tai, Chave, Jerome, Chellam, Ravi, Clark, Connie J., Clavijo, Jose, Congdon, Robert, Corlett, Richard, Dattaraja, H. S., Dave, Chittaranjan, Davies, Glyn, Beisiegel, Beatriz de Mello, da Silva, Rosa de Nazarepaes, Di Fiore, Anthony, Diesmos, Arvin, Dirzo, Rodolfo, Doran-Sheehy, Diane, Eaton, Mitchell, Emmons, Louise, Estrada, Alejandro, Ewango, Corneille, Fedigan, Linda, Feer, Francois, Fruth, Barbara, Willis, Jacalyn Giacalone, Goodale, Uromi, Goodman, Steven, Guix, Juan C., Guthiga, Paul, Haber, William, Hamer, Keith, Herbinger, Ilka, Hill, Jane, Huang, Zhongliang, Sun, I. Fang, Ickes, Kalan, Itoh, Akira, Ivanauskas, Natalia, Jackes, Betsy, Janovec, John, Janzen, Daniel, Jiangming, Mo, Jin, Chen, Jones, Trevor, Justiniano, Hermes, Kalko, Elisabeth, Kasangaki, Aventino, Killeen, Timothy, King, Hen-biau, Klop, Erik, Knott, Cheryl, Kone, Inza, Kudavidanage, Enoka, Ribeiro, Jose Lahoz da Silva, Lattke, John, Laval, Richard, Lawton, Robert, Leal, Miguel, Leighton, Mark, Lentino, Miguel, Leonel, Cristiane, Lindsell, Jeremy, Ling-Ling, Lee, Linsenmair, K. Eduard, Losos, Elizabeth, Lugo, Ariel, Lwanga, Jeremiah, Mack, Andrew L., Martins, Marlucia, McGraw, W. Scott, McNab, Roan, Montag, Luciano, Thompson, Jo Myers, Nabe-Nielsen, Jacob, Nakagawa, Michiko, Nepal, Sanjay, Norconk, Marilyn, Novotny, Vojtech, O'Donnell, Sean, Opiang, Muse, Ouboter, Paul, Parker, Kenneth, Parthasarathy, N., Pisciotta, Katia, Prawiradilaga, Dewi, Pringle, Catherine, Rajathurai, Subaraj, Reichard, Ulrich, Reinartz, Gay, Renton, Katherine, Reynolds, Glen, Reynolds, Vernon, Riley, Erin, Roedel, Mark-Oliver, Rothman, Jessica, Round, Philip, Sakai, Shoko, Sanaiotti, Tania, Savini, Tommaso, Schaab, Gertrud, Seidensticker, John, Siaka, Alhaji, Silman, Miles R., Smith, Thomas B., de Almeida, Samuel Soares, Sodhi, Navjot, Stanford, Craig, Stewart, Kristine, Stokes, Emma, Stoner, Kathryn E., Sukumar, Raman, Surbeck, Martin, Tobler, Mathias, Tscharntke, Teja, Turkalo, Andrea, Umapathy, Govindaswamy, van Weerd, Merlijn, Rivera, Jorge Vega, Venkataraman, Meena, Venn, Linda, Verea, Carlos, de Castilho, Carolina Volkmer, Waltert, Matthias, Wang, Benjamin, Watts, David, Weber, William, West, Paige, Whitacre, David, Whitney, Ken, Wilkie, David, Williams, Stephen, Wright, Debra D., Wright, Patricia, Xiankai, Lu, Yonzon, Pralad, and Zamzani, Franky
Abstract:: The rapid disruption of tropical forests probably imperils global biodiversity more than any other contemporary phenomenon¹⁻³. With deforestation advancing quickly, protected areas are increasingly becoming final refuges for threatened species and natural ecosystem processes. However, many protected areas in the tropics are themselves vulnerable to human encroachment and other environmental...
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Full Text:: Parker129, N. Parthasarathy130, Kátia Pisciotta131, Dewi Prawiradilaga132, Catherine Pringle133, Subaraj

Rattail fescue : biology and management in Pacific Northwest wheat cropping systems : Vulpia myuros (L.) C.C. Gmel. var. hirsuta (Hack.) Aschers. & Graebn.

Creator:: Ball, Daniel A. (Daniel Allen), 1954-, Hulting, Andrew Gerald, Oregon State University. Extension Service, Washington State University. Extension, University of Idaho. Cooperative Extension System, United States. Department of Agriculture, and Pacific Northwest Cooperative Extension
Abstract:: Published October 2009. Reviewed December 2013. Please check for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalog
Resource Type:: Technical Report
Full Text:: . Bennett, D.C. Thill, T. Rauch, E. Jemmett, C. Mallory-Smith, C. Cole, J.P. Yenish, and R. Rood. 2007

Is there a link between wealth and cardiovascular disease risk factors among Hispanic/Latinos? Results from the HCHS/SOL Sociocultural Ancillary Study

Creator:: López-Cevallos, Daniel F.
Abstract:: Objective. To examine the relationship between wealth and cardiovascular disease risk factors among Hispanic/Latinos of diverse backgrounds. Design. This cross-sectional study used data from 4,971 Hispanic/Latinos, 18 to 74 years, who participated in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL) baseline exam and the HCHS/SOL Sociocultural Ancillary Study. Three...
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Full Text:: A., Catherine Cubbin, Susan Egerter, David R. Williams, and Elsie Pamuk. 2010. "Socioeconomic

Variational assimilation of satellite observations in a coastal ocean model off Oregon

Creator:: Kurapov, A. L., Foley, D., Strub, P. T., Egbert, G. D., and Allen, J. S.
Abstract:: Satellite along-track sea surface height (SSH) and multisatellite sea surface temperature (SST) maps are assimilated in a coastal ocean circulation model off Oregon. The study period is June–October 2005, featuring intensive separation of the coastal upwelling jets in the eddy-dominated coastal transition zone (CTZ). The data assimilation (DA) system combines...
Resource Type:: Article
Full Text:: mapping, in which an anisotropic, multivariate covariance is provided by the dynamical model [Bennett

A new tide model for the Antarctic ice shelves and seas

Creator:: Padman, Laurie, Fricker, Helen A., Coleman, Richard, Howard, Susan, and Erofeeva, Lana
Abstract:: We describe a new tide model for the seas surrounding Antarctica, including the ocean cavities under the floating ice shelves. The model uses data assimilation to improve its fit to available data. Typical peak-to-peak tide ranges on ice shelves are 1-2 m but can exceed 3 m for the Filchner-Ronne...
Resource Type:: Article
Full Text:: /Poseidon (T/P) is the only satellite that is designed for this purpose (Smith, 1999; Smith and others, 2000

Location of the Mechanism of Resistance to Amphorophora agathonica (Hemiptera: Aphididae) in Red Raspberry

Creator:: Lightle, D. M., Dossett, M., Backus, E. A., and Lee, J. C.
Abstract:: The aphid Amphorophora agathonica Hottes (Hemiptera: Aphididae) is an important virus vector in red (Rubus idaeus L.) and black (Rubus occidentalis L.) raspberries in North America. Raspberry resistance to A. agathonica in the form of a single dominant gene named Ag1 has been relied upon to help control aphid-transmitted plant...
Resource Type:: Article
Full Text:: the AC-DC EPG developed by Backus and Bennett (2009). Before the beginning of moni- toring, adult

Salinity effects on plasma ion levels, cortisol, and osmolality in Chinook salmon following lethal sampling

Creator:: Stewart, Heather A., Noakes, David L. G., Cogliati, Karen M., Peterson, James T., Iversen, Martin H., and Schreck, Carl B.
Abstract:: Studies on hydromineral balance in fishes frequently employ measurements of electrolytes following euthanasia. We tested the effects of fresh- or salt-water euthanasia baths of tricaine mesylate (MS-222) on plasma magnesium (Mg²⁺) and sodium (Na⁺) ions, cortisol and osmolality in fish exposed to saltwater challenges, and the ion and steroid hormone...
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Full Text:: Summerfelt and Smith, 1990). From each euthanasia bath, we sampled 5 fish immediately (1.5– 2 min after being

Safety voice for ergonomics (SAVE) project: protocol for a workplace cluster-randomized controlled trial to reduce musculoskeletal disorders in masonry apprentices

Creator:: Kincl, Laurel D., Anton, Dan, Hess, Jennifer A., and Weeks, Douglas L.
Abstract:: Background: Masons have the highest rate of overexertion injuries among all construction trades and rank second for occupational back injuries in the United States. Identified ergonomic solutions are the primary method of reducing exposure to risk factors associated with musculoskeletal disorders. However, many construction workers lack knowledge about these solutions,...
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Full Text:: , The Berkman Center for Internet and Society at Harvard University; 2013. 22. Zickuhr K, Smith A

Production possibility frontiers and socioecological tradeoffs for restoration of fire adapted forests

Creator:: Ager, Alan A., Day, Michelle A., and Vogler, Kevin
Abstract:: We used spatial optimization to analyze alternative restoration scenarios and quantify tradeoffs for a large, multifaceted restoration program to restore resiliency to forest landscapes in the western US. We specifically examined tradeoffs between provisional ecosystem services, fire protection, and the amelioration of key ecological stressors. The results revealed that attainment...
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Full Text:: services create conflicts and opportu- nities for restoration programs (Bennett et al., 2009; Allan et al

Who Are You Calling Old? Negotiating Old Age Identity in the Elderly Consumption Ensemble

Creator:: Barnhart, Michelle and Peñaloza, Lisa
Abstract:: As the elderly population increases, more family, friends, and paid service providers assist them with consumption activities in a group that the authors conceptualize as the elderly consumption ensemble (ECE). Interviews with members of eight ECEs demonstrate consumption in advanced age as a group phenomenon rather than an individual one,...
Resource Type:: Article

eDNA as a tool for identifying freshwater species in sustainable forestry: A critical review and potential future applications

Creator:: Coble, Ashley A., Flinders, Camille A., Homyack, Jessica A., Penaluna, Brooke E., Cronn, Richard C., and Weitemier, Kevin
Abstract:: Environmental DNA (eDNA) is an emerging biological monitoring tool that can aid in assessing the effects of forestry and forest manufacturing activities on biota. Monitoring taxa across broad spatial and temporal scales is necessary to ensure forest management and forest manufacturing activities meet their environmental goals of maintaining biodiversity. Our...
Resource Type:: Article

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