Laboratory investigations of physiological processes in phytoplankton require precise control of experimental conditions. Chemostats customized to control and maintain stable pH levels (pHstats) are ideally suited for investigations of the effects of pH on phytoplankton physiology, for example in context of ocean acidification. Here we designed and constructed a simple,...
The near-term progression of ocean acidification (OA) is projected to bring about sharp changes in the chemistry of coastal upwelling ecosystems. The distribution of OA exposure across these early-impact systems, however, is highly uncertain and limits our understanding of whether and how spatial management actions can be deployed to ameliorate...
Koi herpesvirus (KHV) is highly pathogenic to Cyprinus carpio. KHV can also become latent in recovered fish and reactivate from latency under stressful conditions. Understanding KHV latency is important for development of strategies against herpesvirus latent infection. Our previous studies found KHV ORF6 mRNA is detectable during latent infection. In...
Cyprinid herpesvirus 1 (CyHV1) infects all scaled and color varieties of common carp Cyprinus carpio, including koi. While it is most often associated with unsightly growths known as ‘carp pox,’ the underlying lesion (epidermal hyperplasia) can arise from a variety of disease processes. CyHV1-induced epidermal hyperplasia may occur transiently in...
Koi herpesvirus (KHV) is a highly pathogenic virus of common carp and koi. KHV becomes latent in recovered koi or exposed koi without symptoms, and the latent infection can reactivate under stress conditions. KHV reactivation from latency often occurs when water temperature rapidly rises above 17 °C. Dissolved O2 is...
Worldwide, in recent years capture fisheries targeting lower-trophic level forage fish and euphausiid crustaceans have been substantial (∼20 million metric tons [MT] annually). Landings of forage species are projected to increase in the future, and this harvest may affect marine ecosystems and predator-prey interactions by removal or redistribution of biomass...
Fisheries-related mortality has been influential in driving global declines in seabird populations. Understanding the overlap between seabird distribution and fisheries is one important element in assessing bycatch risk, and may be achieved by tracking the movements of individual birds and fishing vessels. Here, we assess the spatiotemporal overlap between the...
Recent studies have demonstrated that some hormones are present in baleen powder from bowhead (Balaena mysticetus) and North Atlantic right (Eubalaena glacialis) whales. To test the potential generalizability of this technique for studies of stress and reproduction in large whales, we sought to determine whether all major classes of steroid...
The dynamic nature of most environments forces many animals to move to meet their fundamental needs. This is especially true in aquatic environments where shifts in spatial ecology (which are a result of movements) are among the first adaptive responses of animals to changes in ecosystems. Changes in the movement...
Research on cetacean foraging ecology is central to our understanding of their spatial and behavioral ecology. Yet, functional mechanisms by which cetaceans detect prey across different scales remain unclear. Here, I postulate that cetaceans utilize a scale-dependent, multimodal sensory system to assess and increase prey encounters. I review the literature...
Using a combination of population‐ and individual‐based analytical approaches, we provide a comprehensive examination of genetic connectivity of Dungeness crab (Cancer magister) along ~1,200 km of the California Current System (CCS). We sampled individuals at 33 sites in 2012 to establish a baseline of genetic diversity and hierarchal population genetic...
Limited approaches exist for studying population connectivity in widely dispersing marine benthic invertebrates. Genetic techniques can provide important insights toward identifying recruitment trajectories. Here, 10 microsatellite loci were used to examine connectivity among Oregon Dungeness crabs (Cancer magister, Dana, 1852) in the California Current System (CCS) (n = 801) as...
The M9 Cascadia subduction zone earthquake represents one of the most pressing natural hazard threats in the Pacific Northwest of the USA with an astonishing high 7–12% chance of occurrence by 2060, mirroring the 2011 devastating earthquake and tsunami in Japan. Yet this region, like many other coastal communities, is...
Bird scaring lines (BSLs) protect longline fishing gear from seabird attacks, save bait, reduce incidental seabird mortality and are the most commonly prescribed seabird bycatch mitigation measure worldwide. We collaborated with fishermen to assess the efficacy of applying BSL regulations from the demersal longline sablefish fishery in Alaska to a...
Two species of burrowing shrimp occur in high densities in US West Coast estuaries, the ghost shrimp, Neotrypaea californiensis, and the blue mud shrimp, Upogebia pugettensis. Both species of shrimp are considered ecosystem engineers as they bioturbate and irrigate extensive galleries within the sediment. While their burrows comprise a dominant...
Understanding connectivity of marine organisms is necessary for determining the appropriate scale of conservation and management strategies. For species that inhabit both the coastal ocean and partially enclosed water bodies (i.e., estuaries or fjords), this information is even more critical since estuaries and fjords are often characterized by hydrological complexities...
Understanding the factors that control predation in pelagic communities can inform predictions of community structure in marine ecosystems. Ubiquitous and selective predators such as cnidarian hydromedusae rely on their nematocysts to capture and retain prey but it is not clear how the density and spatial distribution of these cells relate...
Models that seek to predict environmental variables invariably demonstrate bias when compared to observations. Bias correction (BC) techniques are common in the climate and hydrological modeling communities, but have seen fewer applications to the field of wave modeling. In particular there has been no investigation as to which BC methodology...
Rebuilding of some U.S. West Coast rockfish (Sebastes spp.) stocks relies heavily on mandatory fishery discard, however the long-term condition of discarded fish experiencing capture-related barotrauma is unknown. We conducted two studies designed to evaluate delayed mortality, physical condition,and behavioral competency of yelloweye rockfish, Sebastes ruberrimus, experiencing barotrauma during capture...
Juvenile salmonids display highly variable spatial and temporal patterns of early dispersal that are influenced by density-dependent and density-independent factors.
Although juvenile coho salmon (Oncorhynchus kisutch) movement patterns in streams and their relationship with body mass and growth have been examined in previous studies, most observations were limited to one...
Since the decimation of the southern right
whale Eubalaena australis population in New Zealand by
whaling, research on its recovery has focused on the wintering
ground at the Auckland Islands, neglecting potentially
important wintering habitat at Campbell Island. For
the first time in 20 years we conducted an expedition to...
Periodic weighing of seabird chicks is labour-intensive and repeated handling can cause high levels of disturbance to chicks. Although automatic weighing systems using a fibreglass nest have been designed for albatross species with a pedestal nest made of mud, this approach is inappropriate for great albatross species (genus Diomedea) whose...
Streams that dry during part of the year are common throughout the world, yet studies of the macroinvertebrate assemblages in these types of streams are rare compared to those in permanent streams; and studies that assess the effects of agriculture on temporary stream invertebrates are even rarer. We studied macroinvertebrate...
Managing multiple ecosystem services (ESs) across landscapes presents a central challenge for ecosystem-based management, because services often exhibit spatiotemporal variation and weak associations with co-occurring ESs. Further focus on the mechanistic relationships among ESs and their underlying biophysical processes provides greater insight into the causes of variation and covariation among...
Marine microbes exhibit highly varied, often non-spherical shapes that have functional significance for essential processes, including nutrient acquisition and sinking rates. There is a surprising absence of data, however, on how cell shape affects grazing, which is crucial for predicting the fate of oceanic carbon. We used synthetic spherical and...
We present double-differential measurements of antineutrino charged-current quasielastic scattering in the MINERvA detector. This study improves on a previous single-differential measurement by using updated reconstruction algorithms and interaction models and provides a complete description of observed muon kinematics in the form of a double-differential cross section with respect to muon...
Identification and classification of behavior states in animal movement data can be complex, temporally biased, time-intensive, scale-dependent, and unstandardized across studies and taxa. Large movement datasets are increasingly common and there is a need for efficient methods of data exploration that adjust to the individual variability of each track. We...
Coastal communities are increasingly experiencing climate change–induced coastal disasters and chronic flooding and erosion. Decision makers and the public alike are struggling to reconcile the lack of ‘‘fit’’ between a rapidly changing environment and relatively rigid governance structures. In efforts to bridge this environment-governance gap in Tillamook County, Oregon, stakeholders...
Cytochrome B sequence data (FASTA format) from the paper “Seasonal distribution and environmental associations among late larval and juvenile rockfish (Sebastes spp.) off Oregon and Washington: new insights based on genetics”. The data was generated from a sample of 2534 unknown, field collected late-larval and juvenile rockfishes from the Pacific...
Mucous-mesh grazers (pelagic tunicates and thecosome pteropods) are common in oceanic waters and efficiently capture, consume and repackage particles many orders of magnitude smaller than themselves. They feed using an adhesive mucous mesh to capture prey particles from ambient seawater. Historically, their grazing process has been characterized as non-selective, depending...
The juvenile demersal fish assemblage along the Pacific Northwest coast has received little attention relative to adult life history stages since pioneering work in the 1970s. Increasing severity of hypoxia along the Oregon coast in recent years has prompted investigations into the response of biota in this region. We used...
The particle capture mechanisms of biological filters determine the particle spectrum that is ingested by filter-feeding animals. Although ascidian feeding has been extensively investigated, the organismal-scale fluid dynamics and mesh-scale particle-filter interactions are not fully characterized. Fluorescein dye visualization of flow through the branchial sac of the ascidian Ciona intestinalis...
Appendicularians are ubiquitous marine grazers that use tangential filtration to collect micron and submicron prey. The food-concentrating filter (FCF) is the primary determinant of appendicularian prey selectivity, but the precise means by which it concentrates and conveys particles to the pharyngeal filter remain poorly understood. We used high-speed videography to...
The Western Pacific Ocean barred knifejaw Oplegnathus fasciatus was found from 2013 to 2015 along the Pacific Coast of North America from Washington to California. The knifejaw was found in derelict vessels that had arrived on the Pacific Coast and that had been lost during the March 2011 Great Japan...
This study uses semi-structured interviews and an online survey to explore the structure, challenges and outcomes of a five-year National Science Foundation-funded water scarcity modelling project in the Willamette River Basin of Oregon, USA. The research team chose to facilitate broader impacts by engaging stakeholders from the study’s inception (e.g....
Background: Despite recent work to characterize gene expression changes associated with larval development in oysters, the mechanism by which the larval shell is first formed is still largely unknown. In Crassostrea gigas, this shell forms within the first 24 h post fertilization, and it has been demonstrated that changes in...
OBJECTIVE To document the environmental stewardship practices (decisions and actions regarding use and disposal) of pet and human pharmaceuticals and personal care products (PPCPs) among pet-owning veterinary-care professionals (practicing veterinarians, veterinary students, and veterinary technicians and trainees) and environmental educators. DESIGN Internet-based cross-sectional survey. SAMPLE 191 pet owners (103 veterinary-care...
These slides present a practice paper submitted to the International Data Curation Conference 2018, with the same title. Data Management Plans (DMPs) are one of the most widespread tool that has been used in the last decade to encourage good data management practices among researchers. DMPs are a preventive tool...
The DUNE near detector will be used to characterize the LBNF neutrino beam and to predict the neutrino fluxes at the DUNE far detector. Because of the different detector locations with respect to the beam-line, energy spectra at the two detectors will be slightly different, even in the absence of...
This report and especially the accompanying Detail Files and MapFiles provide relatively detailed information on status, trends, distribution, limiting factors, and conservation needs of all of the Willamette’s wildlife species, listed plants, and vulnerable habitats. Data on habitat suitability for each species is provided by watershed (170 HUC6s), elevation (6...
This document partially addresses the Wetlands component of Island County’s Critical Areas Ordinance (CAO). It presents the results of a year-long collaborative project to compile, analyze, and summarize existing data pertinent to Island County wetlands. Similar in concept to the “report card” issued periodically for Puget Sound, this compilation attempts...
This document is primarily a review of Best Available Science applicable to Island County wetlands, as needed for categorizing wetlands for regulatory actions and determining widths for buffers (setbacks) that protect the functions of wetlands. The number of technical papers and reports published on these topics is enormous, and none...
We compiled existing data and information to characterize the condition and trends in high priority natural resources in Ebey’s Landing National Historical Reserve (EBLA, or "the Reserve"). We identified 29 indicators to evaluate seven major resource concerns. For each indicator we attempted to define reference conditions to which we could...
This article describes the motivation, design, and progress of the Journal of Open Source Software (JOSS). JOSS is a free and open-access journal that publishes articles describing research software. It has the dual goals of improving the quality of the software submitted and providing a mechanism for research software developers...
Student success units, like Writing Centers, are logical partners for academic libraries. It is not uncommon to find tutoring or academic support services located in library Learning Commons spaces. At Oregon State University, we recently launched a Research and Writing Studio that takes these partnerships to the next level. This...
Suspended metallic carbon nanotubes (m-CNTs) exhibit a remarkably large transport gap that can exceed 100 meV. Both experiment and theory suggest that strong electron-electron interactions play a crucial role in generating this electronic structure. To further understand this strongly-interacting system, we have performed electronic measurements of suspended m-CNTs with known...
En mayo de este año, la Revista Panamericana de Salud Pública dedicó un número especial a promover el proceso más reciente de reforma de salud en Ecuador como un caso exitoso en la región. En el artículo editorial, la directora de la Organización Panamericana de la Salud (OPS), Carissa Etienne,...
Contains ground-truthed wetland maps and scores representing ecosystem services of a large portion of the wetlands in Juneau, Alaska. LiDAR imagery was used extensively.
The Juneau Wetland Management Plan (JWMP), Volume 1, provides results of wetlands mapping and wetland functional assessments for currently undeveloped parcels within the City and Borough of Juneau (CBJ). The study areas were selected for their potential for future development based on low elevation and proximity to existing infrastructure. During...
Potentially relevant literature for the years 1990-1999 was identified by (a) conducting keyword searches of computerized bibliographic databases, especially CAB Abstracts and Aquatic Sciences and Fisheries Abstracts, (b) reading through the tables of contents of a few especially relevant journals, (c) searching the internet for pertinent bibliographies, and (d) to...
Wetlands of the Colorado Plateau that receive water from irrigation can, by their functions, support several societal values. For example, their capacity for removing nitrate and perhaps pesticides from nonpoint source runoff might be considerable. However, relatively little research has been conducted in irrigated wetlands, and their ability to alter...
Because studies of forestry effects on wetlands have been so infrequent in the Pacific Northwest, each section in this report drew heavily from studies of forestry impacts to streams and riparian zones. After assembly and synthesis, that information was extrapolated, mostly in the form of hypotheses, to the very different...
The Roger Revelle Commemorative Lecture Series was created by the Ocean Studies Board of the National Academies in honor of Roger Revelle to highlight the important links between ocean sciences and public policy. Dawn J. Wright, the eighteenth annual lecturer, spoke on April 28, 2017, at the Smithsonian National Museum...
The existence, sources, distribution, circulation, and physicochemical nature of macroscale oceanic water bodies have long been a focus of oceanographic inquiry. Building on that work, this paper describes an objectively derived and globally comprehensive set of 37 distinct volumetric region units, called ecological marine units (EMUs). They are constructed on...
Objective. To examine the relationship between wealth and cardiovascular disease risk factors among Hispanic/Latinos of diverse backgrounds.
Design. This cross-sectional study used data from 4,971 Hispanic/Latinos, 18 to 74 years, who participated in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL) baseline exam and the HCHS/SOL Sociocultural Ancillary Study. Three...
Market rationality suffuses many areas of modern criminal justice. Prison privatization is one area in which market rationality is particularly salient. This paper presents a case study of how market rationality was deployed in public discourse on prison privatization. It answers four questions: (1) Who shaped public discourse on prison...
Explaining restoration failure can be as important as touting success. We used a series of studies to understand the failure of techniques commonly used to restore wetland prairies in the Willamette Valley of western Oregon. Burning, fallowing, and solarization (covering tilled plots with plastic sheeting to heat the soil) had...
Question: Most results of restoration efforts are species-specific and/or site-specific and therefore are not general enough to be easily applied to other species and other sites. Our research addresses the issue of species-specific results by investigating the feasibility of using plant traits instead of taxonomic species to characterize species responses...
Questions: Are traits related to the performance of plant species in restoration? Are the relationships between traits and performance consistent across the functional groups of annual forbs, perennial forbs, and grasses? Do the relationships between traits and performance depend on neighboring functional groups? Location: A former agricultural field, being restored...
Declines in Greater Sage-Grouse (Centrocercus urophasianus, hereafter sage-grouse) populations could be attributed to low chick survival, which may be influenced by the availability of food and cover at sites used by females rearing broods. Habitat attributes important to broods may vary regionally; thus, it is necessary to understand factors affecting...
Greater sage-grouse Centrocercus urophasianus populations across North America have been declining due to degradation and fragmentation of sagebrush habitat. As part of a study quantifying greater sage-grouse demographics prior to construction of a wind energy facility, we estimated apparent net nest productivity and survival rate of chicks associated with radio-equipped...
This is an integrated assessment across terrestrial, freshwater, and coastal marine realms. It includes the coast range of Oregon and Washington as well as Vancouver Island in British Columbia. The marine portion only includes the coastline and shallow subtidal; the next iteration will include the offshore component.
This study investigates wind-driven circulation in the vicinity of the Heceta Bank complex along the Oregon shelf. Numerical experiments forced with steady winds (0.1 Pa) are conducted; upwelling and downwelling cases are compared. The asymmetric bank bathymetry is the only configurational difference from the symmetric bank runs analyzed in Part...
This study examines how coastal banks influence wind-driven circulation along stratified continental shelves. Numerical experiments are conducted for idealized symmetric banks; the standard bank (200 km long and 50 km wide) has dimensions similar to the Heceta Bank complex along the Oregon shelf. Model runs are forced with 10 days...
A three‐dimensional primitive‐equation model for application to the nearshore surf zone has been developed. This model, an extension of the Princeton Ocean Model (POM), predicts the wave‐averaged circulation forced by breaking waves. All of the features of the original POM are retained in the extended model so that applications can...
In conjunction with the USArray component of
EarthScope, long period magnetotelluric (MT) data are
being acquired in a series of arrays across the continental US.
Initial deployments in 2006 and 2007 acquired data (10–
10,000 s) at 110 sites covering the US Pacific Northwest,
distributed with the same nominal spacing...
Models of magnetic and gravity anomalies along two E-W transects offshore central Oregon, one of which is coincident with a detailed velocity model, provide quantitative limits on the structure of the subducting oceanic crust and the crystalline backstop. The models indicate that the backstop-forming western edge of the Siletz terrane,...
Seamounts are ubiquitous features of the seafloor that form part of the fabric of oceanic crust. When a seamount enters a subduction zone, it has a major affect on forearc morphology, the uplift history of the island arc, and the structure of the downgoing slab. It is not known, however,...
We report new ⁴⁰Ar/³⁹Ar ages for the oldest Pacific oceanic floor at Ocean Drilling Program Site 801C in the Pigafetta basin and Site 1149D close to the Izu-Bonin subduction zone in the Nadezhda basin. These ages were determined by applying high-resolution incremental heating experiments (including 15–30 heating steps) to better...
Sea surface temperature (SST) and salinity of the Western Pacific Warm Pool (WPWP) reflect global climate effects such as the El Niño–Southern Oscillation phenomenon. However, reconstructions of past changes in the WPWP from the geologic record vary depending on the specific proxy record used. Here we develop a multiproxy record...
Meanders of the shelf break front in the Mid-Atlantic Bight (MAB) during April and May of 1997 were associated with chlorophyll enhancement along a hydrographic and a topographic feature. The hydrographic feature was the surface outcrop of the front, which ranged from ~10 to >100 km seaward of the shelf...
Satellite infrared imagery and coastal meteorological data for March 1984 through February 1985 are used to estimate the net annual surface heat flux for the northern Gulf of California. The average annual surface heat flux for the area north of Guaymas and Santa Rosalia is estimated to be +74 W...
Continuous records of upper water column (0–150 m) temperature profiles, spectral distribution of downwelling irradiance, and phytoplankton solar-induced fluorescence at 25 m depth were obtained during the inaugural deployment of the Hawaii Air-sea Logging Experiment, A Long-term Oligotrophic Habitat Assessment (HALE ALOHA) mooring, near the Hawaii Ocean Time-series (HOT) Station...
Satellite-derived pigment concentrations from the west coast time series (WCTS) are averaged into monthly mean fields over the California Current system (CCS) for the period July 1979 to June 1986. Errors caused by the scattering algorithm used in the WCTS are reduced by an empirical correction function, although winter values...
Three-component (NPZ), four-component (NPZD), and five-component (NNPZD) nitrogen-based ecosystem models are compared. The fixed points of the zerodimensional systems, with no spatial variation except light attenuation by water, are determined. A linear-stability analysis shows that unstable steady solutions exist for all three models. Time-periodic solutions are found in these regions....
Most climate models predict a weakening of the North Atlantic thermohaline circulation for the 21st century when forced by increasing levels of greenhouse gas concentrations. The model spread, however, is rather large, even when the forcing scenario is identical, indicating a large uncertainty in the response to forcing. In order...
A scheme is presented for retrieving aerosol properties for ocean regions from reflected sunlight at both the visible and near infrared wavelengths measured by the NOAA advanced very high resolution radiometer (AVHRR). For the Indian Ocean Experiment (INDOEX), aerosols were presumed to be a mixture of a continental haze that...
The location of the Antarctic Polar Front (PF) was mapped over a 7-year period (1987-1993) within images of satellite-deprived sea surface temperature. The mean path of the PF is strongly steered by the topographic features of the Southern Ocean. The topography places vorticity constraints on the dynamics of the PF...
During July 1970, albacore boats trolling surface jigs (jig boats) had record catches in an area off the mouth of the Columbia River. The jig fishery declined suddenly in late July and was poor throughout the remainder of the summer. No obvious oceanographic changes were correlated with these drastic changes...
Aerobic oxidation is important in the cycling of methane in the sediments of Lake Washington. About half of the methane flux from depth is oxidized to CO, in the upper 0.7 cm of the sediments and the remainder escapes into the water column. In terms of the total carbon budget...
Objective: To examine the associations between the 2008 economic collapse in Iceland and smoking behaviour at the national and individual levels.
Design: A population-based, prospective cohort study based on a mail survey (Health and Wellbeing in Iceland) assessed in 2007 and 2009.
Setting: National mail survey.
Participants: Representative cohort (n=3755)...
While high-performance computing is a fundamental component of CyberGIS, equally important is establishing a fundamental connection between CyberGIS and the various user communities requiring it. This involves the sharing, communication, and collaboration of authoritative, relevant spatial science not only among GIS specialists within their respective organizations, but across relat-ed scientific...
What affects the oceans affects terra firma. Ocean Solutions, Earth Solutions gathers the insights of more than 50 ocean and coastal science researchers exploring ocean components and their relationships, patterns, and trends over time and space. The book's 16 chapters feature geographic information system (GIS) best practices and include additional...
We use density and microstructure data to characterize the properties and physical setting of optical thin layers observed over the New Jersey shelf in the summer of 2006. Layers were differentiated into two types by their vertical position in the water column, fluorescence intensity, and possibly community composition or cell...
A central challenge for natural resource management is developing rigorous yet practical approaches for balancing the costs and benefits of diverse human uses of ecosystems. Economic theory has a long history of evaluating tradeoffs in returns from different assets to identify optimal investment strategies. There has been recent progress applying...