Index Catalog // ScholarsArchive@OSU

Investigating the pore-scale mechanisms of microbial enhanced oil recovery

Creator:: Armstrong, Ryan T. and Wildenschild, Dorthe
Abstract:: Microbial Enhanced Oil Recovery (MEOR) is a process where microorganisms are used for tertiary oil recovery. Numerous mechanisms have been proposed in the literature through which microorganisms facilitate the mobilization of residual oil. Herein, we focus on the MEOR mechanisms of interfacial tension reduction (via biosurfactant) and bioclogging in water-wet...
Resource Type:: Article
Full Text:: oil recovery Ryan T. Armstrong and Dorthe Wildenschild School of Chemical, Biological and

Storage for new or remodeled homes

Creator:: Burridge, Judith Steele and Oregon State University. Extension Service
Abstract:: Published February 1973. Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalog
Resource Type:: Technical Report
Full Text:: Extension Bulletin No. 436. STORAGE for new or remodeled homes Prepared by Judith Burridge

Intense turquoise colors of apatite-type compounds with Mn⁵⁺ in tetrahedral coordination

Creator:: Medina, Elena A., Li, Jun, Stalick, Judith K., and Subramanian, M. A.
Abstract:: The solid solutions of chlorapatite compounds Ba₅Mn₃−[subscript]xV[subscript]xO₁₂Cl (x = 0–3.0) and Ba₅Mn₃−[subscript]xP[subscript]xO₁₂Cl (x = 0–3.0) have been synthesized through solid state reactions and Pechini or sol–gel method using citric acid. The colors of the samples change from white (x = 3.0) through turquoise (x = 1.5) to dark green (x...
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Full Text:: . Medina a, Jun Li a, *, Judith K. Stalick b, M.A. Subramanian a a Department of Chemistry, Oregon State

Point mutation in acetolactate synthase confers sulfonylurea and imidazolinone herbicide resistance in spiny annual sow-thistle [Sonchus asper (L.) Hill]

Creator:: Park, Kee Woong, Kolkman, Judith M., and Mallory-Smith, Carol A.
Abstract:: Suspected thifensulfuron resistant spiny annual sow-thistle was identified near Colfax, Washington, in two fields with a winter wheat and lentil rotation. Therefore, studies were conducted to examine resistance of spiny annual sow-thistle to thifensulfuron and cross-resistance to other acetolactate synthase inhibitors and to determine the physiological and molecular basis for...
Resource Type:: Article
Full Text:: spiny annual sow-thistle [Sonchus asper (L.) Hill] Kee Woong Park1, Judith M. Kolkman2, and Carol A

Resource waves: phenological diversity enhances foraging opportunities for mobile consumers

Creator:: Armstrong, Jonathan B., Takimoto, Gaku, Schindler, Daniel E., Hayes, Matthew M., and Kauffman, Matthew J.
Abstract:: Time can be a limiting constraint for consumers, particularly when resource phenology mediates foraging opportunity. Though a large body of research has explored how resource phenology influences trophic interactions, this work has focused on the topics of trophic mismatch or predator swamping, which typically occur over short periods, at small...
Resource Type:: Article
Full Text:: consumers Jonathan B. armstrong,1,5 gaku takImoto,2 danIel e. schIndler,3 matthew m. hayes,1 and matthew

The Pseudomonas aeruginosa antimetabolite L-2-amino-4-methoxy-trans-3-butenoic acid inhibits growth of Erwinia amylovora and acts as a seed germination-arrest factor

Creator:: Lee, Xiaoyun, Azevedo, Mark D., Armstrong, Donald J., Banowetz, Gary M., and Reimmann, Cornelia
Abstract:: The Pseudomonas aeruginosa antimetabolite L-2-amino-4-methoxy-trans-3-butenoic acid (AMB) shares biological activities with 4-formylaminooxyvinylglycine, a related molecule produced by Pseudomonas fluorescens WH6. We found that culture filtrates of a P.aeruginosa strain overproducing AMB weakly interfered with seed germination of the grassy weed Poa annua and strongly inhibited growth of Erwinia amylovora, the...
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Full Text:: germination-arrest factor Xiaoyun Lee,1 Mark D. Azevedo,2 Donald J. Armstrong,3 Gary M. Banowetz2 and

Trapping and hysteresis in two-phase flow in porous media: A pore-network study

Creator:: Joekar-Niasar, V., Doster, F., Armstrong, R. T., Wildenschild, D., and Celia, M. A.
Abstract:: Abstract: Several models for two-phase flow in porous media identify trapping and connectivity of fluids as an important contribution to macroscale hysteresis. This is especially true for hysteresis in relative permeabilities. The trapping models propose trajectories from the initial saturation to the end saturation in various ways and are often...
Resource Type:: Article
Full Text:: . Doster, R. T. Armstrong, D. Wildenschild, and M. A. Celia (2013), Trapping and hysteresis in two- phase

Connecting Geospatial Information to Society through Cyberinfrastructure

Creator:: Armstrong, Marc P., Nyerges, Timothy L., Wang, Shaowen, and Wright, Dawn
Resource Type:: Part of Book
Full Text:: >Connecting Geospatial Information to Society through Cyberinfrastructure Marc P. Armstrong, Timothy L

Linking pore-scale interfacial curvature to column-scale capillary pressure

Creator:: Armstrong, Ryan T., Porter, Mark L., and Wildenschild, Dorthe
Abstract:: Synchrotron-based tomographic datasets of oil–water drainage and imbibition cycles have been analyzed to quantify phase saturations and interfacial curvature as well as connected and disconnected fluid configurations. This allows for close observation of the drainage and imbibition processes, assessment of equilibrium states, and studying the effects of fluid phase disconnection...
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Full Text:: . Armstrong a,⇑, Mark L. Porter b, Dorthe Wildenschild a a School of Chemical, Biological, and Environmental

Arthropod prey for riparian associated birds in headwater forests of the Oregon Coast Range

Creator:: Hagar, Joan C., Li, Judith, Sobota, Janel, and Jenkins, Stephanie
Abstract:: Headwater riparian areas occupy a large proportion of the land base in Pacific Northwest forests, and thus are ecologically and economically important. Although a primary goal of management along small headwater streams is the protection of aquatic resources, streamside habitat also is important for many terrestrial wildlife species. However, mechanisms...
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Full Text:: Oregon Coast Range Joan C. Hagar a,⇑, Judith Li b,1, Janel Sobota b,1, Stephanie Jenkins c,2 aUS

Pore-scale displacement mechanisms as a source of hysteresis for two-phase flow in porous media

Creator:: Schlüter, S., Berg, S., Rücker, M., Armstrong, R. T., Vogel, H., Hilfer, R., and Wildenschild, D.
Abstract:: The macroscopic description of the hysteretic behavior of two-phase flow in porous media remains a challenge. It is not obvious how to represent the underlying pore-scale processes at the Darcy-scale in a consistent way. Darcy-scale thermodynamic models do not completely eliminate hysteresis and our findings indicate that the shape of...
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Full Text:: . Berg, M. R€ucker, R. T. Armstrong, H.-J. Vogel, R. Hilfer, and D. Wildenschild (2016), Pore-scale

Dynamics of Vector-Host Interactions in Avian Communities in Four Eastern Equine Encephalitis Virus Foci in the Northeastern US

Creator:: Molaei, Goudarz, Thomas, Michael C., Muller, Tim, Medlock, Jan, Shepard, John J., Armstrong, Philip M., and Andreadis, Theodore G.
Abstract:: Background: Eastern equine encephalitis (EEE) virus (Togaviridae, Alphavirus) is a highly pathogenic mosquito-borne zoonosis that is responsible for occasional outbreaks of severe disease in humans and equines, resulting in high mortality and neurological impairment in most survivors. In the past, human disease outbreaks in the northeastern U.S. have occurred intermittently...
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Long-term decline of a winter-resident bird community in Puerto Rico

Creator:: Faaborg, John, Arendt, Wayne J., Toms, Judith D., Dugger, Katie M., Cox, W. Andrew, and Mora, Miguel Canals
Abstract:: Despite concern expressed two decades ago, there has been little recent discussion about continuing declines of migrant bird populations. Monitoring efforts have been focused almost exclusively on the breeding grounds. We describe the long-term decline of a winter-resident bird population in Guánica Commonwealth Forest, Puerto Rico, one of the last...
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Full Text:: -resident bird community in Puerto Rico John Faaborg • Wayne J. Arendt • Judith D. Toms • Katie M. Dugger

True Composition and Structure of Hexagonal “YAlO₃”, Actually Y₃Al₃O₈CO₃

Creator:: Li, Jun, Sinith, Andrew E., Jiang, Peng, Stalick, Judith K., Sleight, Arthur W., and Subramanian, M. A.
Abstract:: The discovery of a brilliant-blue color upon the introduction of Mn³⁺ to the trigonal-bipyramidal (TBP) sites in YInO₃ has led to a search for other hosts for Mn³⁺ in TBP coordination. An obvious choice would be YAlO₃. This compound, which has only been prepared through a citrate precursor route, has...
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Oregon State Forester ; Vol. 26, No. 1 (January 1973)

Creator:: OSU Forestry Alumni Association
Abstract:: Magazine of the OSU Forestry Alumni Association.
Resource Type:: Other
Full Text:: , with IBM at MI. Lakes, New Jersey. Ward Armstrong Elected Alumni President The Board of Directors

STEM Graduate Students’ Development at the Intersection of Research, Leadership, and Innovation

Creator:: Lenhart, Cindy, Bouwma-Gearhart, Jana, Keszler, Douglas A., Giordan, Judith, Carter, Rich, and Dolgos, Michelle
Abstract:: Researcher innovation and leadership skills are fundamental to create implementable solutions to pressing societal- and market-based global problems. The Research to Innovation to Society (R2I2S) program is a transformative approach to graduate education, training students at the intersection of research, innovation, and leadership. We detail the design of the program,...
Resource Type:: Preprint
Full Text:: Judith Giordan, Professor (Practice), Department of Chemistry, Oregon State University, Managing

Negative regulation of germination-arrest factor production in Pseudomonas fluorescens WH6 by a putative extracytoplasmic function sigma factor

Creator:: Okrent, Rachel A., Halgren, Anne B., Azevedo, Mark D., Chang, Jeff H., Mills, Dallice I., Armstrong, Donald J., Maselko, Maciej, Bonowetz, Gary M., and Trippe, Kristin M.
Abstract:: Pseudomonas fluorescens WH6 secretes a germination-arrest factor (GAF) that we have identified previously as 4-formylaminooxyvinylglycine. GAF irreversibly inhibits germination of the seeds of numerous grassy weeds and selectively inhibits growth of the bacterial plant pathogen Erwinia amylovora. WH6-3, a mutant that has lost the ability to produce GAF, contains a...
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Forest lands of the Northwest: selecting among alternative uses

Creator:: Oregon State University. College of Forestry, Armstrong, Ward S., Richmond, Henry R., Heberlein, Thomas A., Petersen, R. Max, and Burns, James A.
Resource Type:: Conference Proceeding
Full Text:: aspects of these issues. Ward S. Armstrong and Henry R. Richmond, respectively Execu- tive Director of

Managing milking on the dairy

Creator:: Gamroth, Michael J., Krahn, Ben, and Oregon State University. Extension Service
Abstract:: Milking labor is a large cost on any dairy farm. Milking routine and parlor design affect the efficiency of milking and the number of cows milked per day for years after construction is completed. This publication discusses ways to improve milking efficiency, drawing largely on time-motion studies initiated by Dennis...
Resource Type:: Technical Report
Full Text:: Armstrong, University of Arizona. What’s involved in milking? To evaluate the performance of a milking

Variation in Antibiotic Susceptibility of Uropathogens by Age among Ambulatory Pediatric Patients

Creator:: McGregor, Jessina C., Quach, Yennie, Bearden, David T., Smith, David H., Sharp, Susan E., and Guzman-Cottrill, Judith A.
Abstract:: We compared uropathogen antibiotic susceptibility across age groups of ambulatory pediatric patients. For Escherichia coli (n=5,099) and other Gram-negative rods (n=626), significant differences (p<0.05) existed across age groups for ampicillin, cefazolin, and trimethoprim/sulfamethoxazole susceptibility. In E. coli, differences in trimethoprim/sulfamethoxazole susceptibility varied from 79% in children under 2 to 88%...
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Full Text:: ; David T Bearden, PharmD; Daivd H Smith, RPh, PhD; Susan E Sharp, PhD; Judith A Guzman-Cottrill, DO

Decadal variations in the global atmospheric land temperatures

Creator:: Muller, Richard A., Curry, Judith, Groom, Donald, Jacobsen, Robert, Perlmutter, Saul, Rohde, Robert, Rosenfeld, Arthur, Wickham, Charlotte, and Wurtele, Jonathan
Abstract:: Interannual to decadal variations in Earth global temperature estimates have often been identified with El Nino Southern Oscillation (ENSO) events. However, we show that variability on time scales of 2-15 years in mean annual global land surface temperature anomalies T-avg are more closely correlated with variability in sea surface temperatures...
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Full Text:: atmospheric land temperatures Richard A. Muller,1,2,3 Judith Curry,4 Donald Groom,2 Robert Jacobsen,1,2 Saul

A rational framework for evaluating the next generation of vaccines against Mycobacterium avium subspecies paratuberculosis

Creator:: Bannantine, John P., Hines, Murray E., II, Bermudez, Luiz E., Talaat, Adel M., Sreevatsan, Srinand, Stabel, Judith R., Chang, Yung-Fu, Coussens, Paul M., Barletta, Raúl G., Davis, William C., Collins, Desmond M., Gröhn, Yrjö T., and Kapur, Vivek
Abstract:: Since the early 1980s, several investigations have focused on developing a vaccine against Mycobacterium avium subspecies paratuberculosis (MAP), the causative agent of Johne’s disease in cattle and sheep. These studies used whole-cell inactivated vaccines that have proven useful in limiting disease progression, but have not prevented infection. In contrast, modified...
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Full Text:: , Adel M. Talaat4, 5, Srinand Sreevatsan6, Judith R. Stabel1, Yung-Fu Chang7, Paul M. Coussens8, Raúl G

Risk of Exposure to Eastern Equine Encephalomyelitis Virus Increases with the Density of Northern Cardinals

Creator:: Estep, Laura K., McClure, Christopher J. W., Vander Kelen, Patrick, Burkett-Cadena, Nathan D., Sickerman, Stephen, Hernandez, José, Jinright, Joseph, Hunt, Brenda, Lusk, John, Hoover, Victor, Armstrong, Keith, Stark, Lillian M., Hill, Geoffrey E., and Unnasch, Thomas R.
Abstract:: For a variety of infectious diseases, the richness of the community of potential host species has emerged as an important factor in pathogen transmission, whereby a higher richness of host species is associated with a lowered disease risk. The proposed mechanism driving this pattern is an increased likelihood in species-rich...
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Full Text:: Jinright4, Brenda Hunt5, John Lusk5, Victor Hoover5, Keith Armstrong5, Lillian M. Stark6, Geoffrey E. Hill2

Na +/H + Antiport Is Essential for Yersinia pestis Virulence

Creator:: Minato, Yusuke, Ghosh, Amit, Faulkner, Wyatt J., Lind, Erin J., Schesser Bartra, Sara, Plano, Gregory V., Jarrett, Clayton O., Hinnebusch, B. Joseph, Winogrodzki, Judith, Dibrov, Pavel, and Hase, Claudia C.
Abstract:: Na⁺/H⁺ antiporters are ubiquitous membrane proteins that play a central role in the ion homeostasis of cells. In this study, we examined the possible role of Na⁺/H⁺ antiport in Yersinia pestis virulence and found that Y. pestis strains lacking the major Na⁺/H⁺ antiporters, NhaA and NhaB, are completely attenuated in...
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Full Text:: ,c Clayton O. Jarrett,d B. Joseph Hinnebusch,d Judith Winogrodzki,e Pavel Dibrov,e Claudia C. Häsea

Energy Frontier Research Center for Solid-State Lighting Science: Exploring New Materials Architectures and Light Emission Phenomena

Creator:: Coltrin, Michael E., Armstrong, Andrew M., Brener, Igal, Chow, Weng W., Crawford, Mary H., Fischer, Arthur J., Kelley, David F., Koleske, Daniel D., Lauhon, Lincoln J., Martin, James E., Nyman, May, Schubert, E. Fred, Shea-Rohwer, Lauren E., Subramania, Ganapathi, Tsao, Jeffrey Y., Wang, George T., Wierer, Jonathan J., Jr., and Wright, Jeremy B.
Abstract:: The Energy Frontier Research Center (EFRC) for Solid-State Lighting Science (SSLS) is one of 46 EFRCs initiated in 2009 to conduct basic and use-inspired research relevant to energy technologies. The overarching theme of the SSLS EFRC is the exploration of energy conversion in tailored photonic structures. In this article we...
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Full Text:: Phenomena Coltrin, M. E., Armstrong, A. M., Brener, I., Chow, W. W., Crawford, M. H., Fischer, A. J

The Impact of Polio Eradication on Routine Immunization and Primary Health Care: A Mixed-Methods Study

Creator:: Closser, Svea, Cox, Kelly, Parris, Thomas M., Landis, R. Matthew, Justice, Judith, Gopinath, Ranjani, Maes, Kenneth, Banteyerga Amaha, Hailom, Mohammed, Ismaila Zango, Dukku, Aminu Mohammed, Omidian, Patricia A., Varley, Emma, Tedoff, Pauley, Koon, Adam D., Nyirazinyoye, Laetitia, Luck, Matthew A., Pont, W. Frank, Neergheen, Vanessa, Rosenthal, Anat, Nsubuga, Peter, Thacker, Naveen, Jooma, Rashid, and Nuttall, Elizabeth
Abstract:: BACKGROUND: After 2 decades of focused efforts to eradicate polio, the impact of eradication activities on health systems continues to be controversial. This study evaluated the impact of polio eradication activities on routine immunization (RI) and primary healthcare (PHC). METHODS: Quantitative analysis assessed the effects of polio eradication campaigns on...
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Invasive mammal eradication on islands results in substantial conservation gains

Creator:: Jones, Holly P., Holmes, Nick D., Butchart, Stuart H. M., Tershy, Bernie R., Kappes, Peter J., Corkery, Ilse, Aguirre-Muñoz, Alfonso, Armstrong, Doug P., Bonnaud, Elsa, Burbidge, Andrew A., Campbell, Karl, Courchamp, Franck, Cowan, Philip E., Cuthbert, Richard J., Ebbert, Steve, Genovesi, Piero, Howald, Gregg R., Keitt, Bradford S., Kress, Stephen W., Miskelly, Colin M., Oppel, Steffen, Poncet, Sally, Rauzon, Mark J., Rocamora, Gérard, Russell, James C., Samaniego-Herrera, Araceli, Seddon, Philip J., Spatz, Dena R., Towns, David R., and Croll, Donald A.
Abstract:: More than US$21 billion is spent annually on biodiversity conservation. Despite their importance for preventing or slowing extinctions and preserving biodiversity, conservation interventions are rarely assessed systematically for their global impact. Islands house a disproportionately higher amount of biodiversity compared with mainlands, much of which is highly threatened with extinction....
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Methods for evaluating the impact of vertical programs on health systems: protocol for a study on the impact of the global polio eradication initiative on strengthening routine immunization and primary health care

Creator:: Closser, Svea, Rosenthal, Anat, Parris, Thomas, Maes, Kenneth, Justice, Judith, Cox, Kelly, Luck, Matthew A., Landis, R. Matthew, Grove, John, Tedoff, Pauley, Venczel, Linda, Nsubuga, Peter, Kuzara, Jennifer, and Neergheen, Vanessa
Abstract:: Background: The impact of vertical programs on health systems is a much-debated topic, and more evidence on this complex relationship is needed. This article describes a research protocol developed to assess the relationship between the Global Polio Eradication Initiative, routine immunization, and primary health care in multiple settings. Methods/Design: This...
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Full Text:: Closser1*, Anat Rosenthal2, Thomas Parris3, Kenneth Maes4, Judith Justice5, Kelly Cox6, Matthew A Luck3, R

National Lipid Association Recommendations for Patient-Centered Management of Dyslipidemia: Part 2

Creator:: Jacobson, Terry A., Maki, Kevin C., Orringer, Carl E., Jones, Peter H., Kris-Etherton, Penny, Sikand, Geeta, La Forge, Ralph, Daniels, Stephen R., Wilson, Don P., Morris, Pamela B., Wild, Robert A., Grundy, Scott M., Daviglus, Martha, Ferdinand, Keith C., Vijayaraghavan, Krishnaswami, Deedwania, Prakash C., Aberg, Judith A., Liao, Katherine P., McKenney, James M., Ross, Joyce L., Braun, Lynne T., Ito, Matthew K., Bays, Harold E., Brown, W. Virgil, Underberg, James A., and NLA Expert Panel
Abstract:: An Expert Panel convened by the National Lipid Association previously developed a consensus set of recommendations for the patient-centered management of dyslipidemia in clinical medicine (part 1). These were guided by the principle that reducing elevated levels of atherogenic cholesterol (non–high-density lipoprotein cholesterol and low-density lipoprotein cholesterol) reduces the risk...
Resource Type:: Article

Probing the Earth’s deep interior through geochemistry

Creator:: White, William M.
Abstract:: Basaltic volcanism provides a window into the Earth’s mantle. Seeing through this window requires seeing through the processes of magma genesis and evolution that distort the view. Radiogenic isotope ratios, and to a lesser extent incompatible elements and stable isotope ratios, allow us to see through these distortions and infer...
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Full Text:: . Others include Dick Armstrong, who does play a GEOCHEMICAL PERSPECTIVES | V O L U M E 4 , N U M

Comparative Genomics of Plant-Associated Pseudomonas spp.: Insights into Diversity and Inheritance of Traits Involved in Multitrophic Interactions

Creator:: Loper, Joyce E., Hassan, Karl A., Mavrodi, Dmitri V., Davis, Edward W., II, Lim, Chee Kent, Shaffer, Brenda T., Elbourne, Liam D. H., Stockwell, Virginia O., Hartney, Sierra L., Breakwell, Katy, Henkels, Marcella D., Tetu, Sasha G., Rangel, Lorena I., Kidarsa, Teresa A., Wilson, Neil L., van de Mortel, Judith E., Song, Chunxu, Blumhagen, Rachel, Radune, Diana, Hostetler, Jessica B., Brinkac, Lauren M., Durkin, A. Scott, Kluepfel, Daniel A., Wechter, W. Patrick, Anderson, Anne J., Kim, Young Cheol, Pierson, Leland S., III, Pierson, Elizabeth A., Lindow, Steven E., Kobayashi, Donald Y., Raaijmakers, Jos M., Weller, David M., Thomashow, Linda S., Allen, Andrew E., and Paulsen, Ian T.
Abstract:: We provide here a comparative genome analysis of ten strains within the Pseudomonas fluorescens group including seven new genomic sequences. These strains exhibit a diverse spectrum of traits involved in biological control and other multitrophic interactions with plants, microbes, and insects. Multilocus sequence analysis placed the strains in three sub-clades,...
Resource Type:: Article
Full Text:: . Henkels1, Sasha G. Tetu3, Lorena I. Rangel2, Teresa A. Kidarsa1, Neil L. Wilson3, Judith E. van de Mortel5

Comparative Genomics of Plant-Associated Pseudomonas spp.: Insights into Diversity and Inheritance of Traits Involved in Multitrophic Interactions

Creator:: Loper, Joyce E., Hassan, Karl A., Mavrodi, Dmitri V., Davis, Edward W., II, Lim, Chee Kent, Shaffer, Brenda T., Elbourne, Liam D. H., Stockwell, Virginia O., Hartney, Sierra L., Breakwell, Katy, Henkels, Marcella D., Tetu, Sasha G., Rangel, Lorena I., Kidarsa, Teresa A., Wilson, Neil L., van de Mortel, Judith E., Song, Chunxu, Blumhagen, Rachel, Radune, Diana, Hostetler, Jessica B., Brinkac, Lauren M., Durkin, A. Scott, Kluepfel, Daniel A., Wechter, W. Patrick, Anderson, Anne J., Kim, Young Cheol, Pierson, Leland S., III, Pierson, Elizabeth A., Lindow, Steven E., Kobayashi, Donald Y., Raaijmakers, Jos M., Weller, David M., Thomashow, Linda S., Allen, Andrew E., and Paulsen, Ian T.
Abstract:: We provide here a comparative genome analysis of ten strains within the Pseudomonas fluorescens group including seven new genomic sequences. These strains exhibit a diverse spectrum of traits involved in biological control and other multitrophic interactions with plants, microbes, and insects. Multilocus sequence analysis placed the strains in three sub-clades,...
Resource Type:: Article
Full Text:: . Henkels1, Sasha G. Tetu3, Lorena I. Rangel2, Teresa A. Kidarsa1, Neil L. Wilson3, Judith E. van de Mortel5

Dynamics of Uranyl Peroxide Nanocapsules

Creator:: Nyman, May and Alam, Todd M.
Abstract:: Discrete aqueous metal oxide polyionic clusters that include aluminum polycations, transition-metal polyoxometalates, and the actinyl peroxide clusters have captivated the interest of scientists in the realm of both their fundamental and applied chemistries. Yet the counterions for these polycations or polyanions are often ignored, even though they are imperative for...
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Full Text:: . Chem.-Eur. J. 2012, 18, 8340. (13) Armstrong, C. R.; Nyman, M.; Shvareva, T.; Sigmon, G. E.; Burns, P

Insurance-based discrimination during prenatal care, labor, and delivery: Perceptions of Oregon mothers

Creator:: Thorburn, S. and De Marco, M.
Abstract:: Objective. The purpose of this study was to improve understanding of who experiences insurance-based discrimination during prenatal care, labor, and delivery and how their health care may differ from that of other women. Methods. We pooled data from the 1998-99, 2000, and 2001 Oregon Pregnancy Risk Assessment Monitoring System and...
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Full Text:: Thorburn S, De Marco M. Word count (not including references): 3993 2

Efficient disruption and replacement of an effector gene in the oomycete Phytophthora sojae using CRISPR/Cas9

Creator:: Fang, Yufeng and Tyler, Brett M.
Abstract:: Phytophthora sojae is an oomycete pathogen of soybean. As a result of its economic importance, P. sojae has become a model for the study of oomycete genetics, physiology and pathology. The lack of efficient techniques for targeted mutagenesis and gene replacement have long hampered genetic studies of pathogenicity in Phytophthora species....
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Full Text:: an effector gene in the oomycete Phytophthora sojae using CRISPR/Cas9 YUFENG FANG1,2 AND BRETT M

Finding Our Way through Phenotypes

Creator:: Deans, Andrew R., Lewis, Suzanna E., Huala, Eva, Anzaldo, Salvatore S., Ashburner, Michael, Balhoff, James P., Blackburn, David C., Blake, Judith A., Burleigh, J. Gordon, Chanet, Bruno, Cooper, Lauren D., Courtot, Mélanie, Csösz, Sándor, Cul, Hong, Dahdul, Wasila, Das, Sandip, Dececchi, T. Alexander, Dettal, Agnes, Diogo, Rui, Druzinsky, Robert E., Dumontier, Michel, Franz, Nico M., Friedrich, Frank, Gkoutos, George V., Haendel, Melissa, Harmon, Luke J., Hayamizu, Terry F., He, Yongqun, Hines, Heather M., Ibrahim, Nizar, Jackson, Laura M., Jaiswal, Pankaj, James-Zorn, Christina, Köhler, Sebastian, Lecointre, Guillaume, Lapp, Hilmar, Lawrence, Carolyn J., Le Novère, Nicolas, Lundberg, John G., Macklin, James, Mast, Austin R., Midford, Peter E., Mikó, István, Mungall, Christopher J., Oellrich, Anika, Osumi-Sutherland, David, Parkinson, Helen, Ramírez, Martín J., Richter, Stefan, Robinson, Peter N., Ruttenberg, Alan, Schulz, Katja S., Segerdell, Erik, Seltmann, Katja C., Sharkey, Michael J., Smith, Aaron D., Smith, Barry, Specht, Chelsea D., Squires, R. Burke, Thacker, Robert W., Thessen, Anne, Fernandez-Triana, Jose, Vihinen, Mauno, Vize, Peter D., Vogt, Lars, Wall, Christine E., Walls, Ramona L., Westerfeld, Monte, Wharton, Robert A., Wirkner, Christian S., Woolley, James B., Yoder, Matthew J., Zorn, Aaron M., and Mabee, Paula
Abstract:: Despite a large and multifaceted effort to understand the vast landscape of phenotypic data, their current form inhibits productive data analysis. The lack of a community-wide, consensus-based, human- and machine-interpretable language for describing phenotypes and their genomic and environmental contexts is perhaps the most pressing scientific bottleneck to integration across...
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Full Text:: through Phenotypes Deans, A. R., Lewis, S. E., Huala, E., Anzaldo, S. S., Ashburner, M., et al. (2015

Big fishery, big data, and little crabs : using genomic methods to examine the seasonal recruitment patterns of early life stage dungeness crab (Cancer magister) in the California Current ecosystem

Creator:: Lee, Elizabeth M. J. and O'Malley, Kathleen
Abstract:: The California Current Ecosystem (CCE) is a dynamic marine ecosystem from which many socioeconomically important fisheries species are harvested. Here, a genotyping-by-sequencing (GBS) approach was used to examine genomic variation in an early life stage (megalopae) of the Dungeness crab (Cancer magister), which constitutes the most valuable single-species commercial fishery...
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Full Text:: . Fish. Aquat. Sci. 4, 99–107. doi: 10.1139/f84-009 Botsford, L. W., Armstrong, D. A., and Shenker, J. M

Big fishery, big data, and little crabs: Using genomic methods to examine the seasonal recruitment patterns of early life stage Dungeness crab (Cancer magister) in the California Current Ecosystem

Creator:: Lee, Elizabeth M. J. and O'Malley, Kathleen G.
Abstract:: The California Current Ecosystem (CCE) is a dynamic marine ecosystem from which many socioeconomically important fisheries species are harvested. Here, a genotyping- by-sequencing (GBS) approach was used to examine genomic variation in an early life stage (megalopae) of the Dungeness crab (Cancer magister), which constitutes the most valuable single-species commercial...
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Full Text:: . Fish. Aquat. Sci. 4, 99–107. doi: 10.1139/f84-009 Botsford, L. W., Armstrong, D. A., and Shenker, J. M

Quantifying Salmon-Derived Nutrient Loads from the Mortality of Hatchery-Origin Juvenile Chinook Salmon in the Snake River Basin

Creator:: Warren, Dana R. and McClure, Michelle M.
Abstract:: Hatchery supplementation of anadromous salmon is extensive across the Pacific Northwest region with millions of juvenile salmon stocked annually. The influence of hatchery-origin fish as prey items in recipient ecosystems has been explored, but influences of these fish on broader stream nutrient dynamics has not been well-studied. Salmon-derived nutrients (SDN)...
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Full Text:: M. McClure National Oceanic and Atmospheric Administration Northwest Fisheries Science Center, 2725

Removal of molluscicidal bait pellets by earthworms and its impact on control of the gray field slug (Derocerus reticulatum Mueller) in western Oregon grass seed fields

Creator:: Gavin, W. E., Mueller-Warrant, G. W., Griffith, S. M., and Banowetz, G. M.
Abstract:: Slugs are common pests of grass seed fields in western Oregon and the current focus of repeated, and often unsuccessful, efforts by growers to control them using molluscicides. Here we document rapid loss of molluscicidal bait pellets to earthworms and the resulting adverse effects on slug control. Three years of...
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Full Text:: systems ranged from 82 to 251 m�2 in perennial ryegrass (Lolium perenne L.) systems (Boyle et al., 1997

The Northern Goshawk on the Southern Blue Mountains and Malheur National Forest: A Technical Review of its Status, Ecology and Management

Creator:: Goodell, John M. and Seager, S. Trent
Abstract:: Stakeholders in the southern Blue Mountains have reported a need for a scientific review of the northern goshawk (Accipiter gentilis atricapillus; hereafter, goshawk) in relation to dry forest restoration and management activities. Here, we provide a compilation of relevant synthesis papers, existing peer-reviewed research, and goshawk monitoring efforts in the...
Resource Type:: Technical Report
Full Text:: : Goodell, J. M. and Seager, ST. 2015. The Northern Goshawk on the Southern Blue Mountains and Malheur

A Comparison of the Spatial Linear Model to Nearest Neighbor (k-NN) Methods for Forestry Applications

Creator:: Ver Hoef, Jay M. and Temesgen, Hailemariam
Abstract:: Forest surveys provide critical information for many diverse interests. Data are often collected from samples, and from these samples, maps of resources and estimates of aerial totals or averages are required. In this paper, two approaches for mapping and estimating totals; the spatial linear model (SLM) and k-NN (k-Nearest Neighbor)...
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Full Text:: Nearest Neighbor (k-NN) Methods for Forestry Applications Jay M. Ver Hoef1*, Hailemariam Temesgen2 1

Population dynamics of mallards breeding in eastern Washington

Creator:: Dugger, Bruce D., Coluccy, John M., Dugger, Katie M., Fox, Trevor T., Kraege, Don, and Petrie, Mark J.
Abstract:: Variation in regional population trends for mallards breeding in the western United States indicates that additional research into factors that influence demographics could contribute to management and understanding the population demographics of mallards across North America. We estimated breeding incidence and adult female, nest, and brood survival in eastern Washington...
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Full Text:: , J. M., T. Yerkes, R. Simpson, J. W. Simpson, L. Armstrong, and J. Davis. 2008. Population dynamics

Finding the Silver Lining... in the Serials Budget Crisis

Creator:: Robertshaw, M. Brooke, Willi Hooper, Michaela, and Goergen-Doll, Kerri
Abstract:: Most readers are familiar with (and indeed weary of) the long-running serials crisis: budgets have stagnated as the cost of serials for STEM disciplines continues to rise (Bosch & Henderson, 2016). These circumstances force libraries to cancel journals, affecting researchers’ instant access to articles. Nearly two decades ago, Mobley (1998)...
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Full Text:: -4), 302–312. Nixon, Judith M. (1999). Using a Database Management Program As a Decision Support

Physicochemical and biological controls on primary and net community production across northeast Pacific seascapes

Creator:: Kavanaugh, Maria T., Emerson, Steven R., Hales, Burke, Lockwood, Deirdre M., Quay, Paul D., and Letelier, Ricardo M.
Abstract:: The subarctic-subtropical transition zone in the North Pacific represents the second largest sink of atmospheric carbon dioxide in the world ocean, yet the relative importance of physical and biological processes in this uptake is debated. In a step toward understanding the spatiotemporal variability of environmental, physiological, and ecological factors that...
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Full Text:: and net community production across northeast Pacific seascapes Kavanaugh, M. T., Emerson, S. R

Effects of 4 weeks whole body vibration on electromechanical delay, rate of force development, and presynaptic inhibition

Creator:: Hong, J., Kipp, K., Johnson, Samuel T., and Hoffman, M. A.
Abstract:: Long-term functional changes after whole-body vibration (WBV) training have been attributed to adaptations in the neuromuscular system. The present study examined the effect of four weeks of WBV training on muscle function outcome variables [rate of force development (RFD), electromechanical delay (EMD)], and spinal control mechanisms (pre-synaptic inhibition). Forty young...
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Full Text:: the responsible mechanisms for WBV induced improvements (Armstrong et al 2009; McBride et al 2010

Viral Outbreak in Corals Associated with an In Situ Bleaching Event: Atypical Herpes-Like Viruses and a New Megavirus Infecting Symbiodinium

Creator:: Correa, Adrienne M. S., Ainsworth, Tracy D., Rosales, Stephanie M., Thurber, Andrew R., Butler, Christopher R., and Thurber, Rebecca L. Vega
Abstract:: Previous studies of coral viruses have employed either microscopy or metagenomics, but few have attempted to comprehensively link the presence of a virus-like particle (VLP) to a genomic sequence. We conducted transmission electron microscopy imaging and virome analysis in tandem to characterize the most conspicuous viral types found within the...
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Full Text:: M. S. Correa1,2, Tracy D. Ainsworth3, Stephanie M. Rosales1, Andrew R. Thurber4, Christopher R

Mechanical stability of ultrathin Ge/Si film on SiO2: The effect of Si/SiO2 interface

Creator:: Huang, Minghuang, Nairn, John A., Liu, Feng, and Lagally, M. G.
Abstract:: We perform two-dimensional linear elastic finite element analysis to investigate the mechanical stability of ultrathin Ge/Si film grown on or bonded to SiO₂, using imperfect interface elements between Si and SiO₂ to model Si/SiO₂ interfacial slippage. We demonstrate that the overall composite film is stable when only the tangential slippage...
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Full Text:: Grant No. DE- FG03-03ER46027. 1A. Sadek, K. Ismail, M. A. Armstrong, D. A. Antoniadis, and F. Stern

30-Arcsecond monthly climate surfaces with global land coverage

Creator:: Mosier, Thomas M., Hill, David F., and Sharp, Kendra V.
Abstract:: Monthly total precipitation and mean temperature climate surfaces, gridded to 30-arcseconds (≈1 km at the equator) and available for all global land areas, are presented. These datasets are generated with a Delta downscaling method, using the 30-arcsecond WorldClim climatologies to scale monthly anomaly grids. For monthly mean temperature, the anomalies...
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Full Text:: land coverage 30-Arcsecond monthly climate surfaces with global land coverage Mosier, T. M., Hill, D

Lake ecosystems of the Lake Washington drainage basin

Creator:: Wissmar, R. C., Richey, J. E., Devol, A. H., and Eggers, D. M.
Abstract:: p.333-386 from Analysis of coniferous forest ecosystems in the Western United States.
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Full Text:: . Wissmar, J. E. Richey, A. H. Devol, and D. M. Eggers INTRODUCTION Lakes are closely coupled to

Forest statistics for Crook County, Oregon : from the inventory phase of the forest survey

Creator:: Wolfe, Harry M. and Pacific Northwest Forest Experiment Station (Portland, Or.)
Resource Type:: Technical Report
Full Text:: . BAILEY, P. N. PRATT, G. E. ALLMAN, M. L. LAURIOFEN, A. W. HOI)GMAN, H. H. ARMSTRONG, B. E. BENNETT, C

Gene expression associated with white syndromes in a reef building coral, Acropora hyacinthus

Creator:: Wright, Rachel M., Aglyamova, Galina V., Meyer, Eli, and Matz, Mikhail V.
Abstract:: Background: Corals are capable of launching diverse immune defenses at the site of direct contact with pathogens, but the molecular mechanisms of this activity and the colony-wide effects of such stressors remain poorly understood. Here we compared gene expression profiles in eight healthy Acropora hyacinthus colonies against eight colonies exhibiting...
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Full Text:: reef building coral, Acropora hyacinthus Wright, R. M., Aglyamova, G. V., Meyer, E., & Matz, M. V

The Gene Ontology in 2010: extensions and refinements

Creator:: Gene Ontology Consortium, Berardini, Tanya Z., Li, Donghui, Huala, Eva, Bridges, Susan, Burgess, Shane, McCarthy, Fiona, Carbon, Seth, Lewis, Suzanna E., Mungall, Christopher J., Abdulla, Amina, Wood, Valerie, Feltrin, Erika, Valle, Giorgio, Chisholm, Rex L., Fey, Petra, Gaudet, Pascale, Kibbe, Warren, Basu, Siddhartha, Bushmanova, Yulia, Eilbeck, Karen, Siegele, Deborah A., McIntosh, Brenley, Renfro, Daniel, Zweifel, Adrienne, Hu, James C., Harris, Midori A., Deegan, Jennifer I., Ireland, Amelia, Lomax, Jane, Jaiswal, Pankaj, Chibucos, Marcus, Gwinn-Giglio, Michelle, Wortman, Jennifer, Hannick, Linda, Madupu, Ramana, Botstein, David, Dolinski, Kara, Livstone, Michael S., Oughtred, Rose, Blake, Judith A., Bult, Carol, Diehl, Alexander D., Dolan, Mary, Drabkin, Harold, Eppig, Janan T., Hill, David P., Ni, Li, Ringwald, Martin, Sitnikov, Dmitry, Collmer, Candace, Torto-Alalibo, Trudy, Laulederkind, Stan, Shimoyama, Mary, Twigger, Simon, D'Eustachio, Peter, Matthews, Lisa, Balakrishnan, Rama, Binkley, Gail, Cherry, J. Michael, Christie, Karen R., Costanzo, Maria C., Engel, Stacia R., Fisk, Dianna G., Hirschman, Jodi E., Hitz, Benjamin C., Hong, Eurie L., Krieger, Cynthia J., Miyasato, Stuart R., Nash, Robert S., Park, Julie, Skrzypek, Marek S., Weng, Shuai, Wong, Edith D., Aslett, Martin, Chan, Juancarlos, Kishore, Ranjana, Sternberg, Paul, Van Auken, Kimberly, Khodiyar, Varsha K., Lovering, Ruth C., and Talmud, Philippa J.
Abstract:: The Gene Ontology (GO) Consortium (http://www.geneontology.org) (GOC) continues to develop, maintain and use a set of structured, controlled vocabularies for the annotation of genes, gene products and sequences. The GO ontologies are expanding both in content and in structure. Several new relationship types have been introduced and used, along with...
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Full Text:: interest statement. None declared. REFERENCES 1. Torto-Alalibo,T., Collmer,C.W. and Gwinn-Giglio,M. (2009

Explicit Planktic Calcifiers in the University of Victoria Earth System Climate Model, Version 2.9

Creator:: Kvale, K. F., Meissner, K. J., Keller, D. P., Eby, M., and Schmittner, A.
Abstract:: Marine calcifiers as a plankton functional type (PFT) are a crucial part of the global carbon cycle, being responsible for much of the carbon export to the deep ocean entering via biological pathways. Deep ocean carbon export through calcifiers is controlled by physiological, ecological and biogeochemical factors. This paper describes...
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Full Text:: ., Eby, M., & Schmittner, A. (2015). Explicit Planktic Calcifiers in the University of Victoria Earth

Improved stability of amorphous zinc tin oxide thin film transistors using molecular passivation

Creator:: Rajachidambaram, M. S., Pandey, A., Vilayurganapathy, S., Nachimuthu, P., Thevuthasan, S., and Herman, G. S.
Abstract:: The role of back channel surface chemistry on amorphous zinc tin oxide (ZTO) bottom gate thin film transistors (TFTs) has been characterized by positive bias-stress measurements and x-ray photoelectron spectroscopy. Positive bias-stress turn-on voltage shifts for ZTO-TFTs were significantly reduced by passivation of back channel surfaces with self-assembled monolayers of...
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Full Text:: using molecular passivation Rajachidambaram, M. S., Pandey, A., Vilayurganapathy, S., Nachimuthu, P

Assessing the carcinogenic potential of low-dose exposures to chemical mixtures in the environment: the challenge ahead

Creator:: Goodson, William H., III, Lowe, Leroy, Carpenter, David O., Gilbertson, Michael, Manaf Ali, Abdul, Lopez de Cerain Salsamendi, Adela, Lasfar, Ahmed, Carnero, Amancio, Azqueta, Amaya, Amedei, Amedeo, Charles, Amelia K., Collins, Andrew R., Ward, Andrew, Salzberg, Anna C., Colacci, Annamaria, Olsen, Ann-Karin, Berg, Arthur, Barclay, Barry J., Zhou, Binhua P., Blanco-Aparicio, Carmen, Baglole, Carolyn J., Dong, Chenfang, Mondello, Chiara, Hsu, Chia-Wen, Naus, Christian C., Yedjou, Clement, Curran, Colleen S., Laird, Dale W., Koch, Daniel C., Carlin, Danielle J., Felsher, Dean W., Roy, Debasish, Brown, Dustin G., Ratovitski, Edward, Ryan, Elizabeth P., Corsini, Emanuela, Rojas, Emilio, Moon, Eun-Yi, Laconi, Ezio, Marongiu, Fabio, Al-Mulla, Fahd, Chiaradonna, Ferdinando, Darroudi, Firouz, Martin, Francis L., Van Schooten, Frederik J., Goldberg, Gary S., Wagemaker, Gerard, Nangami, Gladys N., Calaf, Gloria M., Williams, Graeme P., Wolf, Gregory T., Koppen, Gudrun, Brunborg, Gunnar, Lyerly, H. Kim, Krishnan, Harini, Ab Hamid, Hasiah, Yasaei, Hemad, Sone, Hideko, Kondoh, Hiroshi, Salem, Hosni K., Hsu, Hsue-Yin, Park, Hyun Ho, Koturbash, Igor, Miousse, Isabelle R., Scovassi, A.Ivana, Klaunig, James E., Vondráček, Jan, Raju, Jayadev, Roman, Jesse, Wise, John P., Sr., Whitfield, Jonathan R., Woodrick, Jordan, Christopher, Joseph A., Ochieng, Josiah, Martinez-Leal, Juan F., Weisz, Judith, Kravchenko, Julia, Sun, Jun, Prudhomme, Kalan R., Narayanan, Kannan B., Cohen-Solal, Karine A., Moorwood, Kim, Gonzalez, Laetitia, Soucek, Laura, Jian, Le, D’Abronzo, Leandro S., Lin, Liang-Tzung, Li, Lin, Gulliver, Linda, McCawley, Lisa J., Memeo, Lorenzo, Vermeulen, Louis, Leyns, Luc, Zhang, Luoping, Valverde, Mahara, Khatami, Mahin, Romano, Maria F., Chapellier, Marion, Williams, Marc A., Wade, Mark, Manjili, Masoud H., Lleonart, Matilde E., Xia, Menghang, Gonzalez Guzman, Michael J., Karamouzis, Michalis V., Kirsch-Volders, Micheline, Vaccari, Monica, Kuemmerle, Nancy B., Singh, Neetu, Cruickshanks, Nichola, Kleinstreuer, Nicole, van Larebeke, Nik, Ahmed, Nuzhat, Ogunkua, Olugbemiga, Krishnakumar, P. K., Vadgama, Pankaj, Marignani, Paola A., Ghosh, Paramita M., Ostrosky-Wegman, Patricia, Thompson, Patricia A., Dent, Paul, Heneberg, Petr, Darbre, Philippa, Leung, Po Sing, Nangia-Makker, Pratima, Cheng, Qiang, Robey, R. Brooks, Al-Temaimi, Rabeah, Roy, Rabindra, Andrade-Vieira, Rafaela, Sinha, Ranjeet K., Mehta, Rekha, Vento, Renza, Di Fiore, Riccardo, Ponce-Cusi, Richard, Dornetshuber-Fleiss, Rita, Nahta, Rita, Castellino, Robert C., Palorini, Roberta, Hamid, Roslida A., Langie, Sabine A. S., Eltom, Sakina E., Brooks, Samira A., Ryeom, Sandra, Wise, Sandra S., Bay, Sarah N., Harris, Shelley A., Papagerakis, Silvana, Romano, Simona, Pavanello, Sofia, Eriksson, Staffan, Forte, Stefano, Casey, Stephanie C., Luanpitpong, Sudjit, Lee, Tae-Jin, Otsuki, Takemi, Chen, Tao, Massfelder, Thierry, Sanderson, Thomas, Guarnieri, Tiziana, Hultman, Tove, Dormoy, Valérian, Odero-Marah, Valerie, Sabbisetti, Venkata, Maguer-Satta, Veronique, Rathmell, W. Kimryn, Engström, Wilhelm, Decker, William K., Bisson, William H., Rojanasakul, Yon, Luqmani, Yunus, Chen, Zhenbang, and Hu, Zhiwei
Abstract:: Lifestyle factors are responsible for a considerable portion of cancer incidence worldwide, but credible estimates from the World Health Organization and the International Agency for Research on Cancer (IARC) suggest that the fraction of cancers attributable to toxic environmental exposures is between 7% and 19%. To explore the hypothesis that...
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Full Text:: environment: the challenge ahead Goodson, W. H., Lowe, L., Carpenter, D. O., Gilbertson, M., Ali, A. M., de

Development of a Multiplex PCR for Identification of Vineyard Mealybugs

Creator:: Daane, Kent M., Middleton, Mathew C., Sforza, Rene, Cooper, Monica L., Walton, Vaughn M., Walsh, Douglas B., Zaviezo, Tania, and Almeida, Rodrigo P. P.
Abstract:: A simple molecular tool was developed and tested to identify seven mealybug species found in North American vineyards: Pseudococcus maritimus Ehrhorn, Pseudococcus viburni (Signoret), Pseudococcus longispinus (Targioni-Tozzeti), Pseudococcus calceolariae (Maskell), Planococcus fleas (Signoret), Planococcus citri (Risso), and Ferrisia gilli Gullan. The developed multiplex PCR is based on the mitochondrial cytochrome...
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Full Text:: Identification of Vineyard Mealybugs KENT M. DAANE,1,2 MATHEW C. MIDDLETON,1 RENÉ SFORZA,3 MONICA L. COOPER,4

The Family-Home Nutrition Environment and Dietary Intake in Rural Children

Creator:: Jackson, Jennifer A., Smit, Ellen, Manore, Melinda M., John, Deborah, and Gunter, Katherine
Abstract:: Obesity and food insecurity rates are higher among rural compared to non-rural populations. Little is known, however, about how family-home environments influence childhood obesity-related behaviors, particularly in rural settings. This study examined associations between the family-home nutrition (FN) environment, food insecurity, and dietary intake (fruits, vegetables, whole grains, dairy, protein...
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Full Text:: Rural Children Jackson, J. A., Smit, E., Manore, M. M., John, D., & Gunter, K. (2015). The Family

Computational Insights into the Central Role of Nonbonding Interactions in Modern Covalent Organocatalysis

Creator:: Walden, Daniel M., Ogba, O. Maduka, Johnston, Ryne C., and Cheong, Paul Ha-Yeon
Abstract:: Conspectus: The flexibility, complexity, and size of contemporary organocatalytic transformations pose interesting and powerful opportunities to computational and experimental chemists alike. In this Account, we disclose our recent computational investigations of three branches of organocatalysis in which nonbonding interactions, such as C–H···O/N interactions, play a crucial role in the organization...
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Full Text:: Research special issue “Computational Catalysis for Organic Synthesis”. Daniel M. Walden,† O. Maduka Ogba

Distribution, Stock Composition and Timing, and Tagging Response of Wild Chinook Salmon Returning to a Large, Free-Flowing River Basin

Creator:: Eiler, John H., Masuda, Michele M., Spencer, Ted R., Driscoll, Richard J., and Schreck, Carl B.
Abstract:: Chinook Salmon Oncorhynchus tshawytscha returns to the Yukon River basin have declined dramatically since the late 1990s, and detailed information on the spawning distribution, stock structure, and stock timing is needed to better manage the run and facilitate conservation efforts. A total of 2,860 fish were radio-tagged in the lower...
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Full Text:: Basin Eiler, J. H., Masuda, M. M., Spencer, T. R., Driscoll, R. J., & Schreck, C. B. (2014

Is there a link between wealth and cardiovascular disease risk factors among Hispanic/Latinos? Results from the HCHS/SOL Sociocultural Ancillary Study

Creator:: López-Cevallos, Daniel F.
Abstract:: Objective. To examine the relationship between wealth and cardiovascular disease risk factors among Hispanic/Latinos of diverse backgrounds. Design. This cross-sectional study used data from 4,971 Hispanic/Latinos, 18 to 74 years, who participated in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL) baseline exam and the HCHS/SOL Sociocultural Ancillary Study. Three...
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Full Text:: . Castañeda3; Carmen R. Isasi5; Frank J. Penedo6; Lizette Ojeda7; Sonia M. Davis8; Diana A. Chirinos9

Waterfront revitalization for small cities

Creator:: Oregon State University. Extension Service, Good, James W., Goodwin, Robert F., and Stambaugh, Sharmon M.
Abstract:: Published March 1990. Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalog
Resource Type:: Technical Report
Full Text:: Shannon M. Stambaugh Oregon State University Acknowledgments The authors owe special thanks to the

How Good Science and Stories Can Go Hand-In-Hand

Creator:: Leslie, Heather M., Goldman, Erica, McLeod, Karen L., Sievanen, Leila, Balasubramanian, Hari, Cudney-Bueno, Richard, Feuerstein, Amanda, Knowlton, Nancy, Lee, Kai, Pollnac, Richard, and Samhouri, Jameal F.
Abstract:: What do you say when you have only a minute to explain to a municipal official why keeping track of the number of bird species found in a park may help make decisions about park management? Talk of significant differences among treatments or testing theory will likely meet with glazed...
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Full Text:: How Good Science and Stories Can Go Hand-In-Hand HEATHER M. LESLIE,∗† ERICA GOLDMAN,‡ KAREN L. MCLEOD

Two Longterm Studies of Seasonal Variation in Depressive Symptoms among Community Participants

Creator:: Kerr, David C. R., Shaman, Jeffrey, Washburn, Isaac J., Vuchinich, Samuel, Neppi, Tricia K., Capaldi, Deborah M., and Conger, Rand D.
Abstract:: Background: There is evidence that seasonal variation in depressive symptoms is common in the population. However, research is limited by a reliance on longterm retrospective methods. Methods: Seasonal patterns were tested in two samples of community participants recruited in separate prospective studies in the Midwestern (n = 556 males/females) and...
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Full Text:: State University Deborah M. Capaldi, Ph.D. Oregon Social Learning Center Rand D. Conger, Ph.D

ROS-Induced Nanotherapeutic Approach for Ovarian Cancer Treatment Based on the Combinatorial Effect of Photodynamic Therapy and DJ-1 Gene Suppression

Creator:: Schumann, Canan, Taratula, Olena, Khalimonchuk, Oleh, Palmer, Amy L., Cronk, Lauren M., Jones, Carson V., Escalante, Cesar A., and Taratula, Oleh
Abstract:: This study represents a novel approach for intraoperative ovarian cancer treatment based on the combinatorial effect of a targeted photodynamic therapy (PDT) associated with suppression of the DJ-1 protein, one of the key players in the ROS defense of cancer cells. To assess the potential of the developed therapy, dendrimer-based...
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Full Text:: Accepted Manuscript http://cdss.library.oregonstate.edu/sa-termsofuse AC C EP TE D M AN U SC R

Loop-mediated isothermal amplification for detection of the tomato and potato late blight pathogen, Phytophthora infestans

Creator:: Hansen, Z. R., Knaus, B. J., Tabima, J. F., Press, C. M., Judelson, H. S., Grünwald, N. J., and Smart, Christine D.
Abstract:: Aims: To design and validate a colorimetric loop-mediated isothermal amplification assay for rapid detection of Phytophthora infestans DNA. Methods and Results: Two sets of loop-mediated isothermal amplification (LAMP) primers were designed and evaluated for their sensitivity and specificity for P. infestans. ITSII primers targeted a portion of the internal transcribed...
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Full Text:: ., Andreou, M., Boonham, N., Duffy, B. and Frey, J.E. (2013) Erwinia amylovora loop-mediated isothermal

Active Early: one-year policy intervention to increase physical activity among early care and education programs in Wisconsin

Creator:: LaRowe, Tara L., Tomayko, Emily J., Meinen, Amy M., Hoiting, Jill, Saxler, Courtney, Cullen, Bridget, and Wisconsin Early Childhood Obesity
Abstract:: Background: Early childcare and education (ECE) is a prime setting for obesity prevention and the establishment of healthy behaviors. The objective of this quasi-experimental study was to examine the efficacy of the Active Early guide, which includes evidenced-based approaches, provider resources, and training, to improve physical activity opportunities through structured...
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Full Text:: among early care and education programs in Wisconsin Tara L. LaRowe1*, Emily J. Tomayko2, Amy M. Meinen3

Progress and challenges in using stable isotopes to trace plant carbon and water relations across scales

Creator:: Werner, C., Schnyder, H., Cuntz, M., Keitel, C., Zeeman, M. J., Dawson, T. E., Badeck, F.-W., Brugnoli, E., Ghashghaie, J., Grams, T. E. E., Kayler, Z. E., Lakatos, M., Lee, X., Maguas, C., Ogee, J., Rascher, K. G., Siegwolf, R. T. W., Unger, S., Welker, J., Wingate, L., and Gessler, A.
Abstract:: table isotope analysis is a powerful tool for assessing plant carbon and water relations and their impact on biogeochemical processes at different scales. Our process-based understanding of stable isotope signals, as well as technological developments, has progressed significantly, opening new frontiers in ecological and interdisciplinary research. This has promoted the...
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Full Text:: . Werner1,19, H. Schnyder2, M. Cuntz3, C. Keitel4, M. J. Zeeman5, T. E. Dawson6, F.-W. Badeck7, E. Brugnoli8, J

Basement and Regional Structure Along Strike of the Queen Charlotte Fault in the Context of Modern and Historical Earthquake Ruptures

Creator:: Walton, Maureen A. L., Gulick, Sean P. S., Haeussler, Peter J., Roland, Emily C., and Tréhu, Anne M.
Abstract:: The Queen Charlotte fault (QCF) is a dextral transform system located offshore of southeastern Alaska and western Canada, accommodating ∼4.4 cm/yr of relative motion between the Pacific and North American plates. Oblique convergence along the fault increases southward, and how this convergence is accommodated is still debated. Using seismic reflection...
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Full Text:: Ruptures Walton, M. A. L., Gulick, S. P. S., Haeussler, P. J., Roland, E. C., & Tréhu, A. M. (2015

Assessing the Impacts of Global Warming on Snowpack in the Washington Cascades

Creator:: Casola, Joseph H., Cuo, Lan, Livneh, Ben, Lettenmaier, Dennis P., Stoelinga, Mark T., Mote, Philip W., and Wallace, John M.
Abstract:: The decrease in mountain snowpack associated with global warming is difficult to estimate in the presence of the large year-to-year natural variability in observations of snow-water equivalent (SWE). A more robust approach for inferring the impacts of global warming is to estimate the temperature sensitivity (λ) of spring snowpack and...
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Full Text:: ,@ MARK T. STOELINGA,1 PHILIP W. MOTE,& AND JOHN M. WALLACE1 1 Department of Atmospheric Sciences

SNP-Based Differentiation of Phytophthora infestans Clonal Lineages Using Locked Nucleic Acid Probes and High-Resolution Melt Analysis

Creator:: Hansen, Zachariah R., Knaus, Brian J., Tabima, Javier F., Press, Caroline M., Judelson, Howard S., Grünwald, Niklaus J., and Smart, Christine D.
Abstract:: Phytophthora infestans, the cause of the devastating late blight disease of potato and tomato, exhibits a clonal reproductive lifestyle in North America. Phenotypes such as fungicide sensitivity and host preference are conserved among individuals within clonal lineages, while substantial phenotypic differences can exist between lineages. Whole P. infestans genomes were...
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Full Text:: ; Javier F. Tabima, Botany and Plant Pathology, Oregon State University, Corvallis, 97331; Caroline M

Harmful algal blooms along the North American west coast region: History, trends, causes, and impacts

Creator:: Lewitus, Alan J., Horner, Rita A., Caron, David A., Garcia-Mendoza, Ernesto, Hickey, Barbara M., Hunter, Matthew, Huppert, Daniel D., Kudela, Raphael M., Langlois, Gregg W., Largier, John L., Lessard, Evelyn J., RaLonde, Raymond, Rensel, J. E. Jack, Strutton, Peter G., Trainer, Vera L., and Tweddle, Jacqueline F.
Abstract:: Along the Pacific coast of North America, from Alaska to Mexico, harmful algal blooms (HABs) have caused losses to natural resources and coastal economies, and have resulted in human sicknesses and deaths for decades. Recent reports indicate a possible increase in their prevalence and impacts of these events on living...
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Full Text:: , Barbara M. Hickey b, Matthew Hunter e, Daniel D. Huppert f, Raphael M. Kudela g, Gregg W. Langlois h, John

Anomalous Near-Surface Low-Salinity Pulses off the Central Oregon Coast

Creator:: Mazzini, Piero L. F., Risien, Craig M., Barth, John A., Pierce, Stephen D., Erofeev, Anatoli, Dever, Edward P., Kosro, P. Michael, Levine, Murray D., Shearman, R. Kipp, and Vardaro, Michael F.
Abstract:: From mid-May to August 2011, extreme runoff in the Columbia River ranged from 14,000 to over 17,000 m³/s, more than two standard deviations above the mean for this period. The extreme runoff was the direct result of both melting of anomalously high snowpack and rainfall associated with the 2010–2011 La Niña....
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Full Text:: : 10.1029/2010GL044342 (2010). 9. Roegner, C. G., Hickey, B. M., Newton, J. A., Shanks, A. L. & Armstrong

Distribution and activity of Drosophila suzukii in cultivated raspberry and surrounding vegetation

Creator:: Klick, J., Yang, W. Q., Walton, V. M., Dalton, D. T., Hagler, J. R., Dreves, A. J., Lee, J. C., and Bruck, D. J.
Abstract:: Spotted wing drosophila, Drosophila suzukii (Matsumura) (Diptera: Drosophilidae), may utilize wild ‘Himalaya’ blackberry (HB) Rubus armeniacus Focke or other non-crop plants as refugia and possibly exploit adjacent field margins before colonizing cultivated fruiting crops. Studies were conducted to determine the role of field margins containing HB and their effect on...
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Full Text:: Drosophila suzukii in cultivated raspberry and surrounding vegetation Klick, J., Yang, W. Q., Walton, V. M

Analysis of coniferous forest ecosystems in the Western United States

Creator:: Edmonds, Robert L., Hawk, G. M., Long, J. N., Franklin, J. F., Emmingham, W. H., Reed, K. L., Clark, S. G., Lassoie, J. P., Johnson, D. W., Cole, D. W., Bledsoe, C. S., Cromack, K., Gessel, S. P., Grier, C. C., Richards, B. N., Vogt, K. A., Swanson, F. J., Fredriksen, R. L., McCorison, F. M., Gregory, S. V., Sedell, J. R., Campbell, A. G., Triska, F. J., Wissmar, R. C., Richey, J. E., Devol, A. H., and Eggers, D. M.
Resource Type:: Book
Full Text:: the Coniferous Forest Biome Program, 26 2: Relations Between Vegetation and Enviro,ment 28 G. M. Hawk

Enhanced resistance in Theobroma cacao against oomycete and fungal pathogens by secretion of phosphatidylinositol-3-phosphate-binding proteins

Creator:: Helliwell, Emily E., Vega‐Arreguín, Julio, Shi, Zi, Bailey, Bryan, Xiao, Shunyuan, Maximova, Siela N., Tyler, Brett M., and Guiltinan, Mark J.
Abstract:: The internalization of some oomycete and fungal pathogen effectors into host plant cells has been reported to be blocked by proteins that bind to the effectors' cell entry receptor, phosphatidylinositol-3-phosphate (PI3P). This finding suggested a novel strategy for disease control by engineering plants to secrete PI3P-binding proteins. In this study,...
Resource Type:: Article
Full Text:: ,†,¶, Bryan Bailey4, Shunyuan Xiao5, Siela N. Maximova1,‡, Brett M. Tyler2,3,‡ and Mark J. Guiltinan1

Anadromy and residency in steelhead and rainbow trout (Oncorhynchus mykiss): a review of the processes and patterns

Creator:: Kendall, Neala W., McMillan, John R., Sloat, Matthew R., Buehrens, Thomas W., Quinn, Thomas P., Pess, George R., Kuzishchin, Kirill V., McClure, Michelle M., and Zabela, Richard W.
Abstract:: Oncorhynchus mykiss form partially migratory populations with anadromous fish that undergo marine migrations and residents that complete their life cycle in fresh water. Many populations’ anadromous components are threatened or endangered, prompting interest in understanding ecological and evolutionary processes underlying anadromy and residency. In this paper, we synthesize information to...
Resource Type:: Article
Full Text:: ., Sloat, M. R., Buehrens, T. W., Quinn, T. P., Pess, G. R., ... & Zabel, R. W. (2015). Anadromy and

A Review of Urban Water Body Challenges and Approaches: (1) Rehabilitation and Remediation

Creator:: Hughes, Robert M., Dunham, Susie, Maas-Hebner, Kathleen G., Yeakley, J. Alan, Schreck, Carl, Harte, Michael, Molina, Nancy, Shock, Clinton C., Kaczynski, Victor W., and Schaeffer, Jeff
Abstract:: We review how urbanization alters aquatic ecosystems, as well as actions that managers can take to remediate urban waters. Urbanization affects streams by fundamentally altering longitudinal and lateral processes that in turn alter hydrology, habitat, and water chemistry; these effects create physical and chemical stressors that in turn affect the...
Resource Type:: Article
Full Text:: como también un incremento en los beneficios que la sociedad humana obtiene de ellos. Robert M

Perennial ryegrass grown for seed (western Oregon) [2013]

Creator:: Hart, John M. (John Mervyn), 1947-, Anderson, Nicole P., Chastain, Thomas G., Flowers, Michael Darrell, 1971-, Ocamb, Cynthia Marie, Mellbye, Mark Edward, Young, William C. (William Clyde), and Oregon State University. Extension Service
Abstract:: This guide provides nutrient and lime recommendations for establishment of turf and forage perennial ryegrass grown for seed in western Oregon. Healthy plants with adequate root systems are required to obtain the greatest return from your fertilizer investment. The nutrient recommendations in this guide assume that adequate control of weeds,...
Resource Type:: Technical Report

Surprises and Insights from Long-Term Aquatic Data Sets and Experiments

Creator:: Dodds, Walter K., Robinson, Christopher T., Gaiser, Evelyn E., Hansen, Gretchen J. A., Powell, Heather, Smith, Joseph M., Morse, Nathaniel B., Johnson, Sherri L., Gregory, Stanley V., Bell, Tisza, Kratz, Timothy K., and McDowell, William H.
Abstract:: Long-term research on freshwater ecosystems provides insights that can be difficult to obtain from other approaches. Widespread monitoring of ecologically relevant water-quality parameters spanning decades can facilitate important tests of ecological principles. Unique long-term data sets and analytical tools are increasingly available, allowing for powerful and synthetic analyses across sites....
Resource Type:: Article
Full Text:: . ROBINSON, EVELYN E. GAISER, GRETCHEN J. A. HANSEN, HEATHER POWELL, JOSEPH M. SMITH, NATHANIEL B. MORSE

The Top 10 oomycete pathogens in molecular plant pathology

Creator:: Kamoun, Sophien, Furzer, Oliver, Jones, Jonathan D. G., Judelson, Howard S., Ali, Gul Shad, Dalio, Ronaldo J. D., Roy, Sanjoy Guha, Schena, Leonardo, Zambounis, Antonios, Panabières, Franck, Cahill, David, Ruocco, Michelina, Figueiredo, Andreia, Chen, Xiao-Ren, Hulvey, Jon, Stam, Remco, Lamour, Kurt, Gijzen, Mark, Tyler, Brett M., Grünwald, Niklaus J., Mukhtar, M. Shahid, Tomé, Daniel F. A., Tör, Mahmut, Van den Ackerveken, Guido, McDowell, John, Daayf, Fouad, Fry, William E., Lindqvist-Kreuze, Hannele, Meijer, Harold J. G., Petre, Benjamin, Ristaino, Jean, Yoshida, Kentaro, Birch, Paul R. J., and Govers, Francine
Abstract:: Oomycetes form a deep lineage of eukaryotic organisms that includes a large number of plant pathogens which threaten natural and managed ecosystems. We undertook a survey to query the community for their ranking of plant-pathogenic oomycete species based on scientific and economic importance. In total, we received 263 votes from...
Resource Type:: Article
Full Text:: , XIAO-REN CHEN12, JON HULVEY13, REMCO STAM14, KURT LAMOUR15, MARK GIJZEN16, BRETT M. TYLER17, NIKLAUS J

Estimates of Chinook salmon consumption in Washington State inland waters by four marine mammal predators from 1970 to 2015

Creator:: Chasco, Brandon E., Kaplan, Isaac C., Thomas, Austen C., Acevedo-Gutiérrez, Alejandro, Noren, Dawn P., Ford, Michael J., Hanson, M. Bradley, Scordino, Jonathan J., Jeffries, Steven J., Pearson, Scott, Marshall, Kristin N., and Ward, Eric J.
Abstract:: Conflicts can arise when the recovery of one protected species limits the recovery of another through competition or predation. The recovery of many marine mammal populations on the west coast of the United States has been viewed as a success; however, within Puget Sound in Washington State, the increased abundance...
Resource Type:: Article
Full Text:: , M. Bradley Hanson, Jonathan Scordino, Steve Jeffries, Scott Pearson, Kristin N. Marshall, and Eric J

Integration of Scientific Echo Sounders with an Adaptable Autonomous Vehicle to Extend Our Understanding of Animals from the Surface to the Bathypelagic

Creator:: Moline, Mark A., Benoit-Bird, Kelly, O'Gorman, David, and Robbins, Ian C.
Abstract:: Acoustic echo sounders designed to map and discriminate organisms in the water column have primarily been deployed on ships. Because of acoustic attenuation of higher frequencies used to detect and discriminate micronekton and nekton, this has effectively restricted the range of this information to the upper water column. In an...
Resource Type:: Article
Full Text:: . W. Millard, S. D. McPhail, F. Armstrong, P. Stevenson, and M. Squires

Pore-scale observations of supercritical CO₂ drainage in Bentheimer sandstone by synchrotron x-ray imaging

Creator:: Herring, Anna L., Andersson, Linnea, Newell, D. L., Carey, J. W., and Wildenschild, Dorthe
Abstract:: This work utilizes synchrotron-based x-ray computed microtomography (x-ray CMT) imaging to quantify the volume and topology of supercritical carbon dioxide (scCO₂) on a pore-scale basis throughout the primary drainage process of a 6 mm diameter Bentheimer sandstone core. Experiments were performed with brine and scCO₂ at 8.3 MPa (1200 psi)...
Resource Type:: Article
Full Text:: sequestration apillary fingering rainage -ray microtomography voxel resolution of 4.65 �m; image-based

Influence of a Coastal Riverine Plume on the Cross-shelf Variability in Hydrography, Zooplankton, and Juvenile Salmon Diets

Creator:: Brodeur, R. D. and Morgan, C. A.
Abstract:: Riverine plumes in nearshore coastal waters are areas of enhanced production and accumulation of prey and may increase availability of food during a critical period of juvenile salmon survival and hence serve as a nursery area for these juveniles. Physical and biological sampling was conducted along a cross-shelf transect through...
Resource Type:: Article
Full Text:: , J.H. Moss, M. Thiess, M. Trudel, L.A. Weitkamp, J. Armstrong, and E.C. Norton. 2007b. Regional

Nitrogen fixation in the Gulf of California and the Eastern Tropical North Pacific

Creator:: White, Angelicque E., Foster, Rachel A., Benitez-Nelson, Claudia R., Masqué, Pere, Verdeny, Elisabet, Popp, Brian N., Arthur, Karen E., and Prahl, Fredrick G.
Abstract:: Di-nitrogen (N₂) fixation plays a well-recognized role in the enhancement of primary production and arguably particle export in oligotrophic regions of the subtropical and tropical oceans. However, recent evidence suggests that N₂ fixation may also be significant in regions of the surface ocean proximate to or overlying zones of intense...
Resource Type:: Article
Full Text:: . N2 fixation rates in the summer varied from 15-70 mol N m -2 d -1 , with episodic blooms

The Predictability of Winter Snow Cover over the Western United States

Creator:: Marshall, Susan, Oglesby, Robert J., and Nolin, Anne W.
Abstract:: A set of model runs was made with the National Center for Atmospheric Research (NCAR) Community Climate Model, version 3 (CCM3) to investigate and help assess the relative roles of snow cover anomalies and initial atmospheric states on the subsequent accumulation and ablation seasons. In order to elucidate the physical...
Resource Type:: Article
Full Text:: Armstrong, R. L., and M. J. Brodzik, 2002: Northern Hemisphere EASE-Grid Weekly Snow Cover and Sea Ice

Nesting ecology of Marbled Murrelets at a remote mainland fjord in southeast Alaska

Creator:: Barbaree, Blake A., Nelson, S. Kim, Dugger, Bruce D., Roby, Daniel D., Carter, Harry R., Whitworth, Darrell L., and Newman, Scott H.
Abstract:: Studying the ecology of endangered species in portions of their range where the population remains abundant can provide fundamental information for conservation planners. We studied nesting by radio-tagged Marbled Murrelets (Brachyramphus marmoratus) during 2007 and 2008 in Port Snettisham, a relatively pristine, remote mainland fjord in southeast Alaska with high...
Resource Type:: Article
Full Text:: higher elevations (range: 42–1,100 m) than previously documented in Alaska. Nesting success to �20 days

The dynamics of pressure and form drag on a sloping headland: Internal waves versus eddies

Creator:: Warner, Sally J. and MacCready, Parker
Abstract:: Topographically generated eddies and internal waves have traditionally been studied separately even though bathymetry that creates both phenomena is abundant in coastal regions. Here a numerical model is used to understand the dynamics of eddy and wave generation as tidal currents flow past Three Tree Point, a 1 km long,...
Resource Type:: Article
Full Text:: , 200 m deep, sloping headland in Puget Sound, WA. Bottom pressure anoma- lies due to vertical

Spectral properties of H-reflex recordings after an acute bout of whole-body vibration

Creator:: Kipp, Kristof, Johnson, Samuel T., and Hoffman, Mark A.
Abstract:: Although research supports the use of whole-body vibration (WBV) to improve neuromuscular performance, the mechanisms for these improvements remain unclear. The purpose of this study was to identify the effect of WBV on the spectral properties of electrically evoked H-reflex recordings in the soleus (SOL) muscle. The H-reflex recordings were...
Resource Type:: Article
Full Text:: the maximum H reflex and M wave. The stimulation intensity was then adjusted to produce an H-reflex

Molting, growth, and energetics of newly-settled blue king crab: Effects of temperature and comparisons with red king crab

Creator:: Stoner, Allan W., Copeman, Louise A., and Ottmar, Michele L.
Abstract:: Populations of blue king crab (BKC) (Paralithodes platypus Brandt, 1850) have declined in Alaskan waters over recent decades, and substantial effort is being made to rehabilitate the once important fishery with releases of hatchery-reared juveniles. However, little is known about the species' first year of post-settlement life. This study was...
Resource Type:: Article
Full Text:: days in low-density populations (150 crabs m−2) and 120 days in individual cultures. Growth rate

Antibodies against invasive phenotype-specific antigens increase Mycobacterium avium subspecies paratuberculosis translocation across a polarized epithelial cell model and enhance killing by bovine macrophages

Creator:: Everman, Jamie L. and Bermudez, Luiz E.
Abstract:: Johne's disease, caused by Mycobacterium avium subspecies paratuberculosis (MAP), is a severe chronic enteritis which affects large populations of ruminants globally. Prevention strategies to combat the spread of Johne's disease among cattle herds involve adhering to strict calving practices to ensure young susceptible animals do not come in contact with...
Resource Type:: Article
Full Text:: initial stage of macrophage infection. Keywords: M. avium paratuberculosis, invasion, intestinal tract

Growth and distributional correlates of behavior in three co-occurring juvenile flatfishes

Creator:: Ryer, Clifford H., Boersma, Kate S., and Hurst, Thomas P.
Abstract:: We explored whether anti-predator behavior and intrinsic growth are co-evolved traits in 3 co-occurring juvenile flatfish species: English sole Pleuronectes vetulus, Pacific halibut Hippoglossus stenolepis and northern rock sole Lepidopsetta polyxystra. English sole are risk prone, adopting behavior that renders them more vulnerable to predation, while northern rock sole are...
Resource Type:: Article
Full Text:: shallows (<5 m), where predators are less common, while rock sole would have a deeper distribution, being

State of the Climate in 2012

Creator:: Blunden, Jessica and Arndt, Derek S.
Abstract:: For the first time in several years, the El Niño-Southern Oscillation did not dominate regional climate conditions around the globe. A weak La Niña dissipated to ENSOneutral conditions by spring, and while El Niño appeared to be emerging during summer, this phase never fully developed as sea surface temperatures in...
Resource Type:: Article
Full Text:: STATE OF THE CLIMATE IN 2012 Editors Jessica Blunden Derek S. Arndt Ahira Sánchez-Lugo Wassila M

Global net community production and the putative net heterotrophy of the oligotrophic oceans

Creator:: Westberry, Toby K., Williams, Peter J. le B., and Behrenfeld, Michael J.
Abstract:: Reconciling rates of organic carbon export from the euphotic zone with the consumption of organic material in the dark ocean remains one of the major quantitative uncertainties of the ocean carbon cycle. Euphotic zone net community production (NCP) provides one broad constraint on export flux and potential carbon drawdown. However,...
Resource Type:: Article
Full Text:: . Williams, and M. J. Behrenfeld (2012), Global net community production and the putative net heterotrophy of

Under the microscope: One hundred years of microbiology at Oregon State University

Creator:: Fisher, Jim
Resource Type:: Book
Full Text:: , Camille Partridge, Carlene Pelroy, Dr. William E. Sandine, Dr. Janine E. Trempy and Susan M. Williams

Ecosystem function and services provided by the deep sea

Creator:: Thurber, A. R., Sweetman, A. K., Narayanaswamy, B. E., Jones, D. O. B., Ingels, J., and Hansman, R. L.
Abstract:: The deep sea is often viewed as a vast, dark, remote, and inhospitable environment, yet the deep ocean and seafloor are crucial to our lives through the services that they provide. Our understanding of how the deep sea functions remains limited, but when treated synoptically, a diversity of supporting, provisioning,...
Resource Type:: Article
Full Text:: from ecosystems (Armstrong et al., 2010, 2012). There is of- ten confusion about the definition of

Landscape tree performance

Creator:: Oregon State University. Agricultural Experiment Station and Ticknor, Robert L.
Abstract:: Published June 1971. Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalog
Resource Type:: Technical Report
Full Text:: an asterisk and the reason for this short duration is given. E (early), M (midseason), and L (late

Beyond dichotomous life histories in partially migrating populations: cessation of anadromy in a long-lived fish

Creator:: Bond, Morgan H. and Miller, Jessica A.
Abstract:: Across animal taxa, migration allows individuals to exploit habitats and resources that predictably vary seasonally in suitability. Theory predicts that the ‘‘decision’’ to migrate or not is shaped by the relative fitness costs and benefits of exhibiting a given life history. Adoption of a migratory strategy is widely thought to...
Resource Type:: Article
Full Text:: migrating populations: cessation of anadromy in a long-lived fish Bond, M. H., Miller, J. A., & Quinn, T

Flotsam, jetsam & wrack on Oregon beaches

Creator:: Oregon State University. Extension Service/Marine Advisory Program and Giles, Donald E.
Abstract:: Published March 1980. Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the Sea Grant Catalog: http://seagrant.oregonstate.edu/publications
Resource Type:: Technical Report
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