We present a systems modeling approach to the development of a place-based ecohydrological model. The conceptual model is calibrated to a variety of existing observations, taken in watershed 10 (WS10) at the HJ Andrews Experimental Forest (HJA) in Oregon, USA, a long term ecological research (LTER) site with a long...
Peroxiredoxins (Prxs) were not recognized as a family of enzymes until the 1990s but are now known to be the dominant peroxidases in most organisms. Here, the history and fundamental properties of peroxiredoxins are briefly reviewed, with a special focus on describing how an exquisitely tunable balance between fully folded...
A technical definition of artisan breads is proposed, based on the concepts of lean formulations, long fermentations, and the use of process as the primary way to adapt to changing flour qualities. The current status of what constitutes refined flour for artisan bread production is presented and a conclusion drawn...
Twentieth-century land management has altered the structure and composition of mixed-conifer forests and decreased their resilience to fire, drought, and insects in many parts of the Interior West. These forests occur across a wide range of environmental settings and historical disturbance regimes, so their response to land management is likely...
Greenhouse studies were conducted to evaluate the influence of selected adjuvants on
glyphosate efficacy on yellow nutsedge and tuber production. Glyphosate was applied
at 0, 0.25, 0.43, 0.87, 1.26 (1x rate), and 1.74 kg ae ha⁻¹ 31 d after yellow nutsedge
was planted. Each rate was mixed with one of...
Arctic freshwater ecosystems have been profoundly affected by climate change. Given that the Arctic charr (Salvelinus alpinus) is often the only fish species inhabiting these ecosystems, it represents a valuable model for studying the impacts of climate change on species life‐history diversity and adaptability. Using a genotyping‐by‐se‐ quencing approach, we...
The northern spotted owl (Strix occidentalis caurina) is one of the most intensively studied raptors in the world; however, little is known about the impacts of wildfire on the subspecies and how they use recently burned areas. Three large-scale wildfires in southwest Oregon provided an opportunity to investigate the short-term...
Generally, the groundwater pumped from wells is safe to drink. As water moves through layers of soil to reach the underground aquifer, disease-causing organisms such as bacteria and viruses are filtered out or eaten
by tiny soil animals. Many harmful chemicals also are broken down in the soil before they...
We estimated annual survival rates (S) of 23 radio-marked Northern Spotted Owls (Strix occidentalis caurina) at the Quartz and Timbered Rock burns and adjacent areas in southwest Oregon. We used known-fate models in program MARK to test for differences in survival among three groups (owls dwelling inside of burned areas,...
New analyses of teleseismic body waves from moderate earthquakes in western Argentina demonstrate that active shortening of the Andean foreland occurs on reverse faults extending to 40–50 km depth. Existing crustal‐scale models of foreland deformation invoke thin‐skinned fault geometries, which root into an east‐dipping mid‐crustal décollement. Whereas thin‐skinned thrust sheets...
The quality of macromolecular crystal structures depends, in part, on the quality and quantity of the data used to produce them. Here, we review recent shifts in our understanding of how to use data quality indicators to select a high resolution cutoff that leads to the best model, and of...
The Next Generation Science Standards (NGSS Lead States, 2013) recommend that science courses engage communities of students in scientific practices that include building accurate conceptual models of phenomena central to the understanding of scientific disciplines. We offer a set of activities, implemented successfully at both the secondary and postsecondary levels,...
Published April 1945. Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalog
Of all Pacific salmonids, Chinook salmon Oncorhynchus tshawytscha display the greatest variability in return times to freshwater. The molecular mechanisms of these differential return times have not been well described. Current methods, such as long serial analysis of gene expression (LongSAGE) and microarrays, allow gene expression to be analyzed for...
Straying by hatchery-reared salmon is a major concern for conservation and recovery of many salmon populations. Fisheries managers have attempted to minimize negative ecological and genetic interactions between hatchery and wild fish by using parr-smolt acclimation facilities to ensure successful olfactory imprinting and homing fidelity. However, the effectiveness of offsite...
We document the age and extent of late Quaternary glaciofluvial processes in Garwood Valley, McMurdo Dry Valleys, Antarctica, using mapping, stratigraphy, geochronology, and geochemical analysis of sedimentary and ice deposits. Geomorphic and stratigraphic evidence indicates damming of the valley at its Ross Sea outlet by the expanded Ross Sea ice...
Components of biodiversity in intensively managed forest stands may be reduced in comparison to naturally regenerated stands. Use of herbicides to suppress herbaceous and woody plant species that compete with planted seedlings has been implicated in negative impacts. We designed a large-scale experimental study to test the influence of intensive...
The relationship of running biomechanics, footwear, and injury has been studied extensively in adults. There has been little research on the effects of footwear on running biomechanics in youth.
Trade in live plants has been recognized worldwide as an important invasion pathway for non-native plant pests. Such pests can have severe economic and ecological consequences. Nearly 70% of damaging forest insects and pathogens established in the US between 1860 and 2006 most likely entered on imported live plants. The...
This study quantified long-term changes in streamflows associated with clear-cutting and road construction and examined alternative hydrologic mechanisms to explain stream hydrograph changes in the Cascades Range, western Oregon. We examined differences in paired peak discharges for 150 to 375 storm events for five basin pairs, using 34-year records from...
This two-part study attempts to find appropriate mass dimension and terminal velocity relationships that,
when considered together with particle size distributions (PSD), agree with coincident measurements of ice
water content (IWC), and with variables related to higher moments such as the mean mass-weighted fall
speed. Reliable relationships are required for...
Previous observations and simulations suggest that an approximate 3°–5°C warming occurred at intermediate depths in the North Atlantic over several millennia during Heinrich stadial 1 (HS1), which induces warm salty water (WSW) lying beneath surface cold freshwater. This arrangement eventually generates ocean convective available potential energy (OCAPE), the maximum potential...
Published July 1997. Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalog
We explore the optimal time path of carbon sequestration and carbon abatement in stabilizing
CO₂ levels under uncertainty of climate impacts. Using a two-period sequential decision making
model, we analytically derive optimal rates for the two control variables, abatement and
sequestration rates. Uncertainty is assumed to affect the desired future...
Upwelling jets flow alongshore in approximate geostrophic balance with the onshore pressure gradient induced by coastal upwelling. Observations of such jets have shown that they often move offshore downstream of capes, leaving a pool of upwelled water inshore. Comparisons are made between this behavior and the hydraulic transition of a...
The most widely used and versatile medical radioisotope today is ⁹⁹[superscript]mTc. Roughly 30 million people depend on this radioisotope for diagnostic imaging procedures each year, and this demand is expected to grow. Although there are numerous ways of producing this isotope, the most common is from fission product 99Mo, which...
Por lo general, el agua subterránea extraída de los pozos de agua es buena para beber. A medida que el agua pasa por las diferentes capas del suelo se va purificando poco a poco. Los organismos que causan enfermedades, como bacteria y viruses, van siendo filtrados y digeridos por animalitos...
Abundance, size and development stage data for furcilia and juvenile euphausiids and data on timing and prevalence of attached spermatophores on adult females are used to infer spawning times by four euphausiid species in Frederick Sound and lower Stephens Passage, Southeast Alaska. Results from net tows conducted between late May...
Stream*A*Syst stands for Streamside Assessment System. It is a set of materials for landowners who want to learn more about managing their streamside areas. You can go through these materials on your own to determine whether there are factors related to your stream that could be improved by better management...
Vegetation carbon uptake and respiration constitute the largest carbon cycle of the planet with an annual turnover
in the order of 120 GT. Currently, neither ecosystem carbon uptake (through photosynthesis) nor ecosystem
carbon release (through respiration) can be measured directly during the daytime. Instead, flux-tower measurements
rely on nighttime respiration...
Bird migration occurs at the largest of global scales, but monitoring such movements can be challenging. In the US there is an operational network of weather radars providing freely accessible data for monitoring meteorological phenomena in the atmosphere. Individual radars are sensitive enough to detect birds, and can provide insight...
Management of Italian ryegrass in cereal-based cropping systems continues to be a major production constraint in areas of the U.S.A., including the soft white winter wheat producing regions of the Pacific Northwest. Pyroxasulfone is a soil-applied herbicide with the potential to control broadleaf and grass weed species, including grass weed...
•Background: Managers of landscapes dedicated to forest commodity production require information about how practices influence biological diversity. Individual species and communities may be threatened if management practices truncate or simplify forest age classes that are essential for reproduction and survival. For instance, the degradation and loss of complex diverse forest...
Zooplankton fecal pellet flux is a highly variable component of the biological carbon pump. While fecal pellets can comprise 0 to nearly 100% of particulate organic carbon collected in sediment traps, mechanisms for this variability remain poorly understood. Fecal pellet carbon flux is a complex function of several variables. We...
Surface energy balance is a major determinant of land surface temperature and the Earth's climate. To date, there is no approach that can produce effective, physically consistent, global and multi-decadal energy–water flux data over land. Net radiation (R[subscript n]) can be quantified regionally using satellite retrievals of surface reflectance and...
Interdisciplinary research efforts to integrate the ecological aspects of water with its physical and societal roles have a long history as well as some interesting new developments. Small, paired, experimental watersheds, with their long-term monitoring systems for data collection and their integrated ecosystem approach to analysis, have been at the...
Dynamic bipedal robots, which are capable of versatile behaviour, are rare. Most bipedal robots are either versatile and static or dynamic and limited to specific gaits. Over the last twenty years the bio-inspired spring mass model became a versatile template for bipedal walking and running gaits with many studies motivated...
Many ecosystem services are public goods whose provision depends on the spatial pattern of land use. The pattern of land use is often determined by the decisions of multiple private landowners. Increasing the provision of ecosystem services, while beneficial for society as a whole, may be costly to private landowners....
Significance: Parasite survival and virulence relies on effective defenses against reactive oxygen and nitrogen species produced by the host immune system. Peroxiredoxins (Prxs) are ubiquitous enzymes now thought to be central to such defenses and, as such, have potential value as drug targets and vaccine antigens. Recent Advances: Plasmodial and...
The metabolic theory of ecology (MTE) predicts the effects of body size and temperature on metabolism through considerations of vascular distribution networks and biochemical kinetics. MTE has also been extended to characterise processes from cellular to global levels. MTE has generated both enthusiasm and controversy across a broad range of...
Dormancy is a key life history trait of planktonic calanoid copepods in the genus
Calanus. Empirical evidence suggests that duration of dormancy is controlled by
ambient temperature driving lipid metabolism in individuals. Here, we use the
temperature-dependent metabolic rates of overwintering individuals to show that
increasing temperatures, associated with global...
In some bacteria, cysteine is converted to cysteine sulfinic acid by cysteine dioxygenases (CDO) that are only ∼15–30% identical in sequence to mammalian CDOs. Among bacterial proteins having this range of sequence similarity to mammalian CDO are some that conserve an active site Arg residue (“Arg-type” enzymes) and some having...
Peroxiredoxins (Prxs) make up an ancient family of enzymes that are the predominant peroxidases for nearly all organisms and play essential roles in reducing hydrogen peroxide, organic hydroperoxides, and peroxynitrite. Even between distantly related organisms, the core protein fold and key catalytic residues related to its cysteine-based catalytic mechanism have...
The site-specific incorporation of non-canonical amino acids (ncAAs) into proteins is an important tool for understanding biological function. Traditionally, each new ncAA targeted requires a resource-consuming process of generating new ncAA aminoacyl tRNA synthetase/tRNACUA pairs. However, the discovery that some tRNA synthetases are “permissive,” in that they can incorporate multiple...
Through application of carbon (C) and nitrogen (N) stable isotope analyses, we investigated the benthic trophic structure of
the upper-slope off southern Chile (~45°S) including a recent methane seep area discovered as part of this study. The observed
fauna comprised 53 invertebrates and seven fish taxa, including remains of chemosymbiotic...
When a few bubbles are entrained in a travelling vortex ring, it has been shown that, even at extremely low volume loadings, their presence can significantly affect the structure of the vortex core (Sridhar & Katz, J. Fluid Mech., vol. 397, 1999, pp. 171-202). A typical Euler-Lagrange point-particle model with...
Although ammonia-oxidizing archaea (AOA) and bacteria (AOB) coexist in most non-acidic agricultural soils, the factors that influence their relative contributions to soil nitrification activity remain unclear. A 2- to 4-d whole soil microcosm assay was developed, utilizing the aliphatic C₈ alkyne 1-octyne to inactivate AOB-driven nitrification activity without impacting AOA...
The range in the projections of future climate warming can be attributed to the inherent uncertainty in the representation of climate model parameters and processes. In this study, we assess the effect of uncertainty in climate sensitivity and ocean heat uptake on the rate of future climate change. We apply...
It is hypothesized that the circulation of the tropical Pacific Ocean and atmosphere satisfies the equations of a simple coupled model to within errors having specified covariances, and that the Tropical Atmosphere–Ocean array (TAO) measures the circulation to within errors also having specified covariances. This hypothesis is tested by finding...
Peroxiredoxins (Prxs) are very effective peroxide reducing enzymes, but also are susceptible to being
oxidatively inactivated by their own substrates. The level of sensitivity to such hyperoxidation varies
depending both on the enzyme involved and the type of peroxide substrate. For some Prxs, the
hyperoxidation has physiological relevance, so it...
The Escherichia coli sulfur starvation utilization (ssu) operon includes a two-component monooxygenase system made up of an NADPH-dependent FMN reductase, SsuE, and a monooxygenase, SsuD. SsuE is part of the flavodoxin-like superfamily, and we report here the crystal structures of its apo, FMN-bound and FMNH₂-bound forms at ~2 Å resolution....
In western conifer-dominated forests where the abundance of old-growth stands is decreasing, species
such as the Brown Creeper (Certhia americana) may be useful as indicator species for monitoring the health
of old-growth systems because they are strongly associated with habitat characteristics associated with old growth
and are especially sensitive to...
By mapping the three-dimensional density field while simultaneously tracking a subsurface, isopycnal float, direct observations of upwelling along a shelfbreak front were made on the southern flank of Georges Bank. The thermohaline and bio-optical fields were mapped using a towed undulating vehicle, and horizontal velocity was measured with a shipboard...
Metamorphosis is often characterized by profound changes in morphology and physiology that can affect the dynamics of species interactions. For example, the interaction between a pathogen and its host may differ depending on the life stage of the host or pathogen. One pathogen that infects hosts with complex life cycles...
Uncertainty in above ground forest biomass (AGB) estimates at broad-scale depends primarily on three sources of error that interact and propagate: measurement error, model error, and sampling error. Using Monte Carlo simulations, we compare the total propagated error for two sets of regional-level component equations for lodgepole pine AGB, and...
A nonlinear 2½-layer reduced gravity primitive equations (PE) ocean model is used to assimilate sea surface
temperature (SST) data from the Tropical Atmosphere–Ocean (TAO) moored buoys in the tropical Pacific. The
aim of this project is to hindcast cool and warm events of this part of the ocean, on seasonal...
OBJECTIVE: To establish a statewide network to detect, control, and prevent the spread of carbapenem-resistant Enterobacteriaceae (CRE)
in a region with a low incidence of CRE infection.
DESIGN: Implementation of the Drug Resistant Organism Prevention and Coordinated Regional Epidemiology (DROP-CRE) Network.
SETTING AND PARTICIPANTS: Oregon infection prevention and microbiology laboratory...
Spectral attenuation and absorption coefficients of particulate matter and collocated hydrographic measurements were obtained in the Mid-Atlantic Bight during the fall of 1996 and the spring of 1997 as part of the Coastal Mixing and Optics experiment. Within the bottom boundary layer (BBL) the magnitude of the beam attenuation decreased...
At global and regional scales, tree mortality rates are positively correlated with forest net primary productivity (NPP). Yet causes of the correlation are unknown, in spite of potentially profound implications for our understanding of environmental controls of forest structure and dynamics and, more generally, our understanding of broad-scale environmental controls...
During the Ice in Clouds Experiment–Layer Clouds (ICE-L), aged biomass-burning particles were identified within two orographic wave cloud regions over Wyoming using single-particle mass spectrometry and electron microscopy. Using a suite of instrumentation, particle chemistry was characterized in tandem with cloud microphysics. The aged biomass-burning particles comprised ~30%–40% by number...
Anadromous Oncorhynchus mykiss (steelhead) express diverse migratory behaviors and life history strategies. Adult migration timing diversity within steelhead is often categorized into divergent early- and late-migration phenotypes. On the Rogue River in Oregon, adult steelhead return from the ocean during distinct early-summer, late-summer, and winter runs. Additionally, some juvenile steelhead...
Coibamide A is an N-methyl-stabilized depsipeptide that was isolated from a marine cyanobacterium as part of an International Cooperative Biodiversity Groups (ICBG) program based in Panama. Previous testing of coibamide A in the NCI in vitro 60 cancer cell line panel revealed a potent anti-proliferative response and "COMPARE-negative" profile indicative...
This publication incorporates 20 years of field research by OSU faculty comparing two grass-seed residue management methods: full straw load (straw is chopped and left on the field) and clean nonthermal (straw is baled and removed from the field). Comparison includes discussion of seed yield and quality, nutrient management considerations...
Ligand activation of the aryl hydrocarbon (AHR) has profound effects upon the immunological status of the gastrointestinal tract, establishing and maintaining signaling networks, which facilitate host-microbe homeostasis at the mucosal interface. However, the identity of the ligand(s) responsible for such AHR-mediated activation within the gut remains to be firmly established....
BACKGROUND: On the basis of the 2014 guidelines for hypertension therapy in the United States, many eligible adults remain untreated. We projected the cost-effectiveness of treating hypertension in U.S. adults according to the 2014 guidelines.
METHODS: We used the Cardiovascular Disease Policy Model to simulate drug-treatment and monitoring costs, costs...
Active mountain building associated with the accretion of the Yakutat microplate (YT) in southern Alaska is characterized through the combination of a new balanced cross section and new low-temperature cooling ages. This analysis constrains the amount and timing of shortening, the spatial and temporal trends of exhumation, and the interplay...
Ideal values of bond angles and lengths used as external restraints are crucial for the successful
refinement of protein crystal structures at all but the highest of resolutions. The restraints in
common usage today have been designed based on the assumption that each type of bond or
angle has a...
As fisheries management shifts to an ecosystem-based approach, understanding energy pathways and trophic relationships in the Northern California Current (NCC) will become increasingly important for predictive modeling and understanding ecosystem response to changing ocean conditions. In the NCC, pelagic forage fishes are a critical link between seasonal and interannual variation...
One key responsibility of leaders involves crafting and communicating two types of messages—visions and values—that help followers understand the ultimate purpose of their work. Although scholars have long considered how leaders communicate visions and values to establish a sense of purpose, they have overlooked how these messages can be used...
In this paper, we introduce a novel algorithm for incorporating uncertainty into lookahead planning. Our algorithm searches through connected graphs with uncertain edge costs represented by known probability distributions. As a robot moves through the graph, the true edge costs of adjacent edges are revealed to the planner prior to...
Effects of climate change, retreating glaciers, and changing storm patterns on debris flow hazards concern
managers in the Cascade Range (USA) and mountainous areas worldwide. During an intense rainstorm in
November 2006, seven debris flows initiated from proglacial gullies of separate basins on the flanks of Mount
Rainier. Gully heads...
Sediments associated with hydrothermal venting, methane seepage and large organic falls such as whale, wood and plant detritus create deep-sea networks of soft-sediment habitats fueled, at least in part, by the oxidation of reduced chemicals. Biological studies at deep-sea vents, seeps and organic falls have looked at macrofaunal taxa, but...
Some eyespots are thought to deflect attack away from the vulnerable body, yet there is limited empirical evidence for this function and its adaptive advantage. Here, we demonstrate the conspicuous ventral hindwing eyespots found on Bicyclus anynana butterflies protect against invertebrate predators, specifically praying mantids. Wet season (WS) butterflies with...
Batrachochytrium dendrobatidis (hereafter Batrachochytrium), a fungal pathogen of amphibians, causes the disease chytridiomycosis which is responsible for unprecedented population declines and extinctions globally. Host defenses against chytridiomycosis include cutaneous symbiotic bacteria and anti-microbial peptides, and proposed treatment measures include use of fungicides and bioaugmentation. Efforts to eradicate the fungus from...
Vegetation growing on the surface of a streambank has been shown to alter the shear stresses
applied to the boundary, but basic questions remain regarding the influence of vegetation and
streambank configurations on near-bank hydraulics. In the present study, Froude-scaled flume
experiments were used to investigate how changes in vegetation...
Task time estimation is a core industrial engineering discipline. However, the process to collect the required data is manually intensive and tedious, thus making it expensive to keep the data current. Radio frequency signals have been used to automate the required data collection in some applications. However, such radio frequency...
Background: Mangroves are ecologically important and highly threatened forest communities. Observational and genetic evidence has confirmed the long distance dispersal capacity of water-dispersed mangrove seeds, but less is known about the relative importance of pollen vs. seed gene flow in connecting populations. We analyzed 980 Avicennia germinans for 11 microsatellite...
Concurrent satellite-measured chlorophyll (CHL), sea surface temperature (SST), sea level anomaly (SLA) and model-derived wind vectors from the 13+ year SeaWiFS period September 1997 – December 2010 quantify time and space patterns of phytoplankton variability and its links to physical forcing in the Pacific Ocean. The CHL fields are a...
A substantial portion of the carbon (C) emitted by human activity is apparently being stored in forest ecosystems in the Northern Hemisphere, but the magnitude
and cause are not precisely understood. Current official estimates of forest C flux are based on a combination of field measurements and other methods. The...
Accurate biomass measurements and analyses are critical components in quantifying carbon stocks and sequestration rates, assessing potential impacts due to climate change, locating bio-energy processing plants, and mapping and planning fuel treatments. To this end, biomass equations will remain a key component of future carbon measurements and estimation. As researchers...
Species composition within ecological assemblages can drive disease dynamics including pathogen invasion, spread, and persistence. In multi-host pathogen systems, interspecific variation in responses to infection creates important context dependency when predicting the outcome of disease. Here, we examine the responses of three sympatric host species to a single fungal pathogen,...
Sierra Nevada forests have high understory species richness yet we do not know which site factors influence
herb and shrub distribution or abundance. We examined the understory of an old-growth mixed-conifer
Sierran forest and its distribution in relation to microsite conditions. The forest has high species richness
(98 species sampled),...
Economic theory predicts that individual migration decisions for working-age adults will depend on area differences in wages, housing costs, and amenities. While the importance of wages and amenities is well-established from previous empirical studies, evidence regarding housing costs is far less conclusive. We develop and test a new method for...
Canopy gaps created by tree mortality can affect the speed and trajectory of vegetation growth, species’ population dynamics, and spatial heterogeneity in mature forests. Most studies focus on plant development within gaps, yet gaps also affect the mortality and growth of surrounding trees, which influence shading and root encroachment into...
Across the western US, the two most prevalent native forest insect pests are mountain pine beetle (MPB; Dendroctonus ponderosae; a bark beetle) and western spruce budworm (WSB; Choristoneura freemani; a defoliator). MPB outbreaks have received more forest management attention than WSB outbreaks, but studies to date have not compared their...
We present a new method developed for measuring radiocarbon of methane (¹⁴CH₄) in ancient air samples
extracted from glacial ice and dating 11,000–15,000 calendar years before present. The small size (~20 μg CH₄ carbon), low
CH₄ concentrations ([CH₄], 400–800 parts per billion [ppb]), high carbon monoxide concentrations ([CO]), and low...
The ascomycete Geosmithia morbida and the walnut twig beetle Pityophthorus juglandis are associated with thousand
cankers disease of Juglans (walnut) and Pterocarya (wingnut). The disease was first reported in the western United States
(USA) on several Juglans species, but has been found more recently in the eastern USA in the...
During the discovery and description of seven New Zealand methane seep sites, an infaunal assemblage dominated by ampharetid polychaetes was found in association with high seabed methane emission. This ampharetid-bed assemblage had a mean density of 57,000 ± 7800 macrofaunal individuals m⁻² and a maximum wet biomass of 274 g...
This work advances a unified approach to process-based hydrologic modeling, which we term the ‘‘Structure for Unifying Multiple Modeling Alternatives (SUMMA).’’ The modeling framework, introduced in the companion paper, uses a general set of conservation equations with flexibility in the choice of process parameterizations (closure relationships) and spatial architecture. This...
Lenticular wave clouds are used as a natural laboratory to estimate the linear and mass growth rates of ice particles at temperatures from -20° to -32°C and to characterize the apparent rate of ice nucleation at water saturation at a nearly constant temperature. Data are acquired from 139 liquid cloud...
Sporosarcina pasteurii is known to produce calcite or biocement in the presence of urea and Ca²⁺. Herein, we report the use of novel ultramicrosensors such as pH, Ca²⁺, and redox sensors, along with a scanning electrochemical microscope (SECM), to monitor a real-time, bacteria-mediated urea hydrolysis process and subsequent changes in...
Ultraviolet-protective compounds, such as mycosporine-like amino acids (MAAs) and related gadusols produced by some bacteria, fungi, algae, and marine invertebrates, are critical for the survival of reef-building corals and other marine organisms exposed to high-solar irradiance. These compounds have also been found in marine fish, where their accumulation is thought...
With the continued and unprecedented decline of coral reefs worldwide, evaluating the factors that contribute to coral demise is of critical importance. As coral cover declines, macroalgae are becoming more common on tropical reefs. Interactions between these macroalgae and corals may alter the coral microbiome, which is thought to play...
We demonstrate optomechanical quantum control of the internal electronic states of a diamond nitrogenvacancy (NV) center in the resolved-sideband regime by coupling the NV to both optical fields and surface acoustic waves via a phonon-assisted optical transition and by taking advantage of the strong excited-state electron-phonon coupling of a NV...
Vegetation structure quantified by light detection and ranging (LiDAR) can improve understanding of wildlife occupancy and species-richness patterns. However, there is often a time lag between the collection of LiDAR data and wildlife data. We investigated whether a time lag between the LiDAR acquisition and field-data acquisition affected mapped wildlife...
Rivers display temporal dependence in suspended sediment–water discharge relationships. Although most work has focused on multi-decadal trends, river sediment behavior often displays sub-decadal scale fluctuations that have received little attention. The objectives of this study were to identify inter-annual to decadal scale fluctuations in the suspended sediment–discharge relationship of a...
Recent studies of estuarine sediment deposits have focused on grain size spectra as a tool to better understand depositional processes, in particular those associated with tidal inlet and basin dynamics. The key to accurate interpretation of lithostratigraphic sequences is establishing clear connections between morphodynamic changes and the resulting shifts in...
Although field-collected recordings typically contain multiple simultaneously vocalizing birds of different species, acoustic species classification in this setting has received little study so far. This work formulates the problem of classifying the set of species present in an audio recording using the multi-instance multi-label (MIML) framework for machine learning, and...