As decomposers, fungi are key players in recycling plant material in global carbon cycles. We hypothesized that genomes of early diverging fungi may have inherited pectinases from an ancestral species that had been able to extract nutrients from pectin-containing land plants and their algal allies (Streptophytes). We aimed to infer,...
Convergent evolution is common throughout the tree of life, but the molecular mechanisms causing similar phenotypes to appear repeatedly are obscure. Yeasts have arisen in multiple fungal clades, but the genetic causes and consequences of their evolutionary origins are unknown. Here we show that the potential to develop yeast forms...
Mixia osmundae (Basidiomycota, Pucciniomycotina) represents a monotypic class containing
an unusual fern pathogen with incompletely understood biology. We sequenced and analyzed
the genome of M. osmundae, focusing on genes that may provide some insight into its
mode of pathogenicity and reproductive biology.
Mixia osmundae has the smallest plant pathogenic basidiomycete...
The use of in situ measurements is essential in the validation and evaluation of the algorithms that provide coastal water quality data products from ocean colour satellite remote sensing. Over the past decade, various types of ocean colour algorithms have been developed to deal with the optical complexity of coastal...
Correction
5 Mar 2013: Ohm RA, Feau N, Henrissat B, Schoch CL, Horwitz BA, et al. (2013) Correction: Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi. PLOS Pathogens 9(3): 10.1371/annotation/fcca88ac-d684-46e0-a483-62af67e777bd
The genomes of five Cochliobolus heterostrophus strains, two Cochliobolus sativus strains, three additional Cochliobolus species (Cochliobolus victoriae, Cochliobolus carbonum, Cochliobolus miyabeanus), and closely related Setosphaeria turcica were sequenced at the Joint Genome Institute (JGI). The datasets were used to identify SNPs between strains and species, unique genomic regions, core secondary...
In partially migratory species, such as Oncorhynchus mykiss, the emergence of life history phenotypes is often attributed
to fitness trade-offs associated with growth and survival. Fitness trade-offs can be linked to reproductive tactics that vary between
the sexes, as well as the influence of environmental conditions. We found that O....
An experiment evaluating three levels of vegetation competition control (no control, 1.5 m2 of vegetation control, and 3.3 m2 of vegetation control), each with two fertilization treatments (fertilization at the time of planting with complete slow-release fertilizer (Woodace® IBDU), or no fertilization), was installed at five sites. Two of these...
Reproductive tactics and migratory strategies in Pacific and Atlantic salmonines are inextricably linked through the effects of migration (or lack thereof) on age and size at maturity. In this review, we focus on the ecological and evolutionary patterns of freshwater maturation in salmonines, a key process resulting in the diversification...
Measurement of a quantum system - the process by which an observer gathers information about it - provides a link between the quantum and classical worlds. The nature of this process is the central issue for attempts to reconcile quantum and classical descriptions of physical processes. Here, we show that...
In a 1966 American Naturalist article, G. C. Williams
initiated the study of reproductive effort (RE) with the prediction
that longer-lived organisms ought to expend less in reproduction per
unit of time. We can multiply RE, often measured in fractions of
adult body mass committed to reproduction per unit time,...
Patterns of seasonal abundance of harbor seals at Netarts and Tillamook Bays, Oregon, were documented by recording numbers of seals hauling out on tidally exposed sand flats in both bays. Harbor seal abundance at Tillamook Bay peaked during pupping (May-June) and molting (August) periods, while peak abundance at Netarts Bay...
Azalea lace bug is an emerging pest in Oregon that can be quite damaging to azaleas and rhododendrons, very popular plants in Oregon nurseries and landscapes. This publication offers information on identification, timing, and management options for this new pest.
We consider the (massless) scalar field on a two-dimensional manifold with metric that changes signature from Lorentzian to Euclidean. Requiring a conserved momentum in the spatially homogeneous case leads to a particular choice of propagation rule. The resulting mix of positive and negative frequencies depends only on the total (conformal)...
The influence of fertilization on disease severity is unknown in most forest pathosystems. Fertilization treatments were randomly applied to 0.01 ha plots centered on individual dominant or co-dominant Douglas-fir trees in ten Douglas-fir stands from coastal Oregon to the foothills of the Oregon Cascade Range, USA. This region is affected...
We examine some of the subtleties inherent in formulating a theory of spinors on a manifold with a smooth degenerate metric. We concentrate on the case where the metric is singular on a hypersurface that partitions the manifold into Lorentzian and Euclidean domains. We introduce the notion of a complex...
BACKGROUND: Result summaries are now required to be reported in ClinicalTrials.gov for many 1 trials of drugs and
devices.
PURPOSE: To evaluate the consistency of reporting in trials that are both registered in the ClinicalTrials.gov results
database and published in the literature.
DATA SOURCES: ClinicalTrials.gov results database, matched publications identified...
Fundamental laws governing human mobility have many important applications such as forecasting and controlling
epidemics or optimizing transportation systems. These mobility patterns, studied in the context of out of home activity
during travel or social interactions with observations recorded from cell phone use or diffusion of money, suggest that in...
In the past decade, Oregon produced on average 344,000 tons of sweet corn for processing on 43,000 acres annually, which ranked the state fourth nationally.
Most Oregon sweet corn is grown in the Willamette Valley where, along with green beans, it is a mainstay of the processed vegetable industry. However,...
La chinche de encaje (Stephanitis pyrioides) de la azalea, también conocida como “azalea lace bug” en ingles, es una nueva plaga que causa daños considerables en las azaleas y los rododendros. En esta publicación hay información sobre ciclo de vida del insecto, cómo el daño se caracteriza, monitoreo y control.
There is growing interest in the application of human-associated fecal source identification quantitative real-time PCR (qPCR) technologies for water quality management. The transition from a research tool to a standardized protocol requires a high degree of confidence in data quality across laboratories. Data quality is typically determined through a series...
Automatic transfer of learned knowledge from one task or domain to another offers great potential to simplify and expedite
the construction and deployment of intelligent systems.
In practice however, there are many barriers to achieving this
goal. In this article, we present a prototype system for the
real-world context of...
In response to the recent expansion of piñon and juniper woodlands into sagebrush-steppe communities in the northern Great Basin region, numerous conifer-removal projects have been implemented, primarily to release understory vegetation at sites having a wide range of environmental conditions. Responses to these treatments have varied from successful restoration of...
Concentrations of H₂O and CO₂ in olivine-hosted melt inclusions can be used to estimate crystallization depths for the olivine host. However, the original dissolved CO₂ concentration of melt inclusions at the time of trapping can be difficult to measure directly because in many cases substantial CO₂ is transferred to shrinkage...
Managers reduce piñon (Pinus spp.) and juniper (Juniperus spp.) trees that are encroaching on sagebrush (Artemisia spp.)
communities to lower fuel loads and increase cover of desirable understory species. All plant species in these communities
depend on soil water held at >-1.5 MPa matric potential in the upper 0.3 m...
We investigated the species identity and local use of cetaceans on the Gilbert
Islands, Republic of Kiribati. Working with the Kiribati Ministry of Environment,
Lands and Agricultural Development and Fisheries Division, we visited
the islands of Tarawa, Tabiteuea (North), Butaritari and Onotoa from June to
July 2009, and collected 24...
This publication is written for you, to help you succeed as a 4-H club leader. As the leader of a 4-H group, one of your main responsibilities is to provide guidance for the organization and operation of your club. You will discover that the members (and other leaders) of the...
Research has shown that youth learn best by doing.1 Active involvement of the learner is the key. Teaching knowledge and skills by using a variety of tools and techniques will provide good learning experiences for all 4-H members. Remember that “learn by doing” is a basic concept in 4-H, and...
Extensive first-pass metabolism of ingested bisphenol A (BPA) in the gastro-intestinal tract and liver restricts blood concentrations of bioactive BPA to < 1% of total BPA in humans and non-human primates. Absorption of ingested BPA through non-metabolizing tissues of the oral cavity, recently demonstrated in dogs, could lead to the...
Most youth cessation treatment research consists of efficacy studies in which treatments are evaluated under optimal conditions of delivery. Less is known about the effectiveness of youth cessation treatments delivered in real-world, community based settings. A national sample of 41 community-based youth cessation programs participated in a longitudinal evaluation to...
In sagebrush ecosystems invasion of annual exotics and expansion of piñon (Pinus monophylla Torr. and Frem.) and juniper
(Juniperus occidentalis Hook., J. osteosperma [Torr.] Little) are altering fire regimes and resulting in large-scale ecosystem
transformations. Management treatments aim to increase resilience to disturbance and enhance resistance to invasive species by...
Paralytic shellfish poisoning (PSP) is an acute toxic illness in humans resulting from ingestion of shellfish contaminated with a suite of neurotoxins (saxitoxins) produced by marine dinoflagellates, most commonly in the genus Alexandrium. Poisoning also has been sporadically suspected and, less often, documented in marine wildlife, often in association with...
Hypothesis: Although the risks for operating room distractions and interruptions (ORDIs) are acknowledged, most research on this topic is unrealistic, inconclusive, or methodologically unsound. We hypothesized that realistic ORDIs induce errors in a simulated surgical procedure performed by novice surgeons.
Design, Setting, and Participants: Eighteen second-year, third-year and research-year surgical...
Published April 2008. Reviewed October 2013. Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalog
Piñon (Pinus spp.) and juniper (Juniperus spp.) trees are reduced to restore native vegetation and avoid severe fires where they have expanded into sagebrush (Artemisia tridentata Nutt.) communities. However, what phase of tree infilling should treatments target to retain desirable understory cover and avoid weed dominance? Prescribed fire and tree...
This publication has been designed to teach others how to become effective facilitators. It includes a lesson plan, leader's guide, participant handouts, and worksheets.
The workshop leader should have an easel with paper pad, enough participant handouts and worksheets. A workshop preregistration assists in preparing enough handouts and worksheets.
The...
Correction
10 Aug 2012: Klinck H, Mellinger DK, Klinck K, Bogue NM, Luby JC, et al. (2012) Correction: Near-Real-Time Acoustic Monitoring of Beaked Whales and Other Cetaceans Using a Seaglider™. PLOS ONE 7(8): 10.1371/annotation/57ad0b82-87c4-472d-b90b-b9c6f84947f8.
The Sagebrush Steppe Treatment Evaluation Project (SageSTEP) is an integrated long-term study that evaluates ecological effects of alternative treatments designed to reduce woody fuels and to stimulate the herbaceous understory of sagebrush steppe communities of the Intermountain West. This synopsis summarizes results through 3 yr posttreatment. Woody vegetation reduction by...
The Mars Science Laboratory mission aims to land a car-sized rover on Mars’ surface and operate it for at least one Mars year in order to assess whether its field area was ever capable of supporting microbial life. Here we describe the approach used to identify, characterize, and assess environmental...
Four decades after the passage of the US Clean Air Act, air-quality standards are set to protect ecosystems from damage caused by gas-phase nitrogen (N) and sulfur (S) compounds, but not from the deposition of these air pollutants to land and water. Here, we synthesize recent scientific literature on the...
Complex systems science provides a transdisciplinary framework to study systems characterized by (1) heterogeneity, (2) hierarchy, (3) self‐organization, (4) openness, (5) adaptation, (6) memory, (7) non‐linearity, and (8) uncertainty. Complex systems thinking has inspired both theory and applied strategies for improving ecosystem resilience and adaptability, but applications in forest ecology...
Background: Since whole genome sequences of rice were made publically accessible, the number of articles on new rice genes has increased remarkably. The Committee on Gene Symbolization, Nomenclature and Linkage (CGSNL) of the Rice Genetics Cooperative published the gene nomenclature system for rice and encouraged researchers to follow the rules...
Gramene (http://www.gramene.org) is a curated
online resource for comparative functional
genomics in crops and model plant species, currently
hosting 27 fully and 10 partially sequenced
reference genomes in its build number 38. Its
strength derives from the application of a phylogenetic
framework for genome comparison and the
use of ontologies...
The Clouds, Aerosol, and Precipitation in the Marine Boundary Layer (CAP-MBL) deployment at Graciosa Island in the Azores generated a 21-month (April 2009–December 2010) comprehensive dataset documenting clouds, aerosols, and precipitation using the Atmospheric Radiation Measurement Program (ARM) Mobile Facility (AMF). The scientific aim of the deployment is to gain...
A general porous-medium equation is uniquely solved subject to a pair of boundary conditions for the trace of the solution and a second function on the boundary. The use of maximal monotone graphs for the three nonlinearities permits not only the inclusion of the usual boundary conditions of Dirichlet, Neumann,...
Phytochemicals from cruciferous vegetables, such as broccoli, contain a multitude of bioactive compounds that prevent and suppress cancer and promote optimal health. Some of the health promoting effects of cruciferous vegetables are attributed to a class of compounds known as isothiocyanates (ITCs), a potent nuclear factor erythroid 2–related factor 2...
Exotic species dominate many communities; however the functional significance of species’ biogeographic origin remains highly contentious. This debate is fuelled in part by the lack of globally replicated, systematic data assessing the relationship between species provenance, function and response to perturbations. We examined the abundance of native and exotic plant...
Background:
Eastern equine encephalitis (EEE) virus (Togaviridae, Alphavirus) is a highly pathogenic mosquito-borne zoonosis that is responsible for occasional outbreaks of severe disease in humans and equines, resulting in high mortality and neurological impairment in most survivors. In the past, human disease outbreaks in the northeastern U.S. have occurred intermittently...
Published Fall 1998. Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalog
Published 2000. Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalog