Index Catalog // ScholarsArchive@OSU

Targeted Capture Sequencing in Whitebark Pine Reveals Range-Wide Demographic and Adaptive Patterns Despite Challenges of a Large, Repetitive Genome

Creator:: Syring, John V., Tennessen, Jacob A., Jennings, Tara N., Wegrzyn, Jill, Scelfo-Dalbey, Camille, and Cronn, Richard
Abstract:: Whitebark pine (Pinus albicaulis) inhabits an expansive range in western North America, and it is a keystone species of subalpine environments. Whitebark is susceptible to multiple threats – climate change, white pine blister rust, mountain pine beetle, and fire exclusion – and it is suffering significant mortality range-wide, prompting the...
Resource Type:: Article
Full Text:: , Linfield College, McMinnville, OR, USA, 2 Department of Integrative Biology, Oregon State University

Big fishery, big data, and little crabs: Using genomic methods to examine the seasonal recruitment patterns of early life stage Dungeness crab (Cancer magister) in the California Current Ecosystem

Creator:: Lee, Elizabeth M. J. and O'Malley, Kathleen G.
Abstract:: The California Current Ecosystem (CCE) is a dynamic marine ecosystem from which many socioeconomically important fisheries species are harvested. Here, a genotyping- by-sequencing (GBS) approach was used to examine genomic variation in an early life stage (megalopae) of the Dungeness crab (Cancer magister), which constitutes the most valuable single-species commercial...
Resource Type:: Article
Full Text:: Center, Oregon State University, Newport, OR, United States The California Current Ecosystem (CCE) is a

The Role of Complement in Cnidarian-Dinoflagellate Symbiosis and Immune Challenge in the Sea Anemone Aiptasia pallida

Creator:: Poole, Angela Z., Kitchen, Sheila A., and Weis, Virginia M.
Abstract:: The complement system is an innate immune pathway that in vertebrates, is responsible for initial recognition and ultimately phagocytosis and destruction of microbes. Several complement molecules including C3, Factor B, and mannose binding lectin associated serine proteases (MASP) have been characterized in invertebrates and while most studies have focused on...
Resource Type:: Article
Full Text:: , Oregon State University, Corvallis, OR, USA, 2 Department of Biology, Western Oregon Universtiy

Diverse Evolutionary Trajectories for Small RNA Biogenesis Genes in the Oomycete Genus Phytophthora

Creator:: Bollmann, Stephanie R., Fang, Yufeng, Press, Caroline M., Tyler, Brett M., and Grünwald, Niklaus J.
Abstract:: Gene regulation by small RNA pathways is ubiquitous among eukaryotes, but little is known about small RNA pathways in the Stramenopile kingdom. Phytophthora a genus of filamentous oomycetes, contains many devastating plant pathogens, causing multibillion-dollar damage to crops, ornamental plants, and natural environments. The genomes of several oomycetes including Phytophthora...
Resource Type:: Article
Full Text:: Biology, Oregon State University, Corvallis, OR, USA Specialty section: This article was submitted to

Viral Outbreak in Corals Associated with an In Situ Bleaching Event: Atypical Herpes-Like Viruses and a New Megavirus Infecting Symbiodinium

Creator:: Correa, Adrienne M. S., Ainsworth, Tracy D., Rosales, Stephanie M., Thurber, Andrew R., Butler, Christopher R., and Thurber, Rebecca L. Vega
Abstract:: Previous studies of coral viruses have employed either microscopy or metagenomics, but few have attempted to comprehensively link the presence of a virus-like particle (VLP) to a genomic sequence. We conducted transmission electron microscopy imaging and virome analysis in tandem to characterize the most conspicuous viral types found within the...
Resource Type:: Article
Full Text:: . Butler1,5 and Rebecca L. Vega Thurber1* 1 Department of Microbiology, Oregon State University, Corvallis

Label-Free Proteomics Assisted by Affinity Enrichment for Elucidating the Chemical Reactivity of the Liver Mitochondrial Proteome toward Adduction by the Lipid Electrophile 4-hydroxy-2-nonenal (HNE)

Creator:: Tzeng, Shin-Cheng and Maier, Claudia S.
Abstract:: The analysis of oxidative stress-induced post-translational modifications remains challenging due to the chemical diversity of these modifications, the possibility of the presence of positional isomers and the low stoichiometry of the modified proteins present in a cell or tissue proteome. Alcoholic liver disease (ALD) is a multifactorial disease in which...
Resource Type:: Article
Full Text:: State University, Corvallis, OR, USA The analysis of oxidative stress-induced post-translational

2014 Seed production research at Oregon State University, USDA-ARS cooperating

Creator:: Alderman, S. C., Anderson, Nicole, Cating, R. A., Chastain, T. G., Dung, J. K. S., Elias, S. G., Flowers, Michael, Frost, K. E., Garbacik, C. J., Hamm, P. B., Hulting, Andrew, Kaur, N., Lestari, A. S., Mueller-Warrant, G. W., Oregon State University. Department of Crop Science, Rao, S., Rondon, Silvia I., Salisbury, S. E., Sullivan, Clare, Trippe, K. M., United States. Agricultural Research Service, Walenta, Darrin, and Whittaker, G. W.
Resource Type:: Other
Full Text:: 2014 SEED PRODUCTION RESEARCH AT OREGON STATE UNIVERSITY

2012 Seed production research at Oregon State University, USDA-ARS cooperating

Creator:: Hulting, Andrew, Anderson, Nicole, Walenta, Darren, Flowers, Michael, Oregon State University. Department of Crop Science, and United States. Agricultural Research Service
Resource Type:: Other
Full Text:: Fescue Seed Lots in Oregon 2012 SEED PRODUCTION RESEARCH AT OREGON STATE UNIVERSITY USDA-ARS

Impact of postfire logging on soil bacterial and fungal communities and soil biogeochemistry in a mixed-conifer forest in central Oregon

Creator:: Jennings, Tara N., Smith, Jane E., Cromack, Kermit, Jr., Sulzman, Elizabeth W., McKay, Donaraye, Caldwell, Bruce A., and Beldin, Sarah I.
Abstract:: Postfire logging recoups the economic value of timber killed by wildfire, but whether such forest management activity supports or impedes forest recovery in stands differing in structure from historic conditions remains unclear. The aim of this study was to determine the impact of mechanical logging after wildfire on soil bacterial...
Resource Type:: Article
Full Text:: and Society, Oregon State University, Corvallis, OR 97331, USA T. N. Jennings : J. E. Smith (*) :D

2013 Seed production research at Oregon State University, USDA-ARS cooperating

Creator:: Anderson, Nicole, Hulting, Andrew, Walenta, Darrin, Flowers, Michael, Oregon State University. Department of Crop Science, and United States. Agricultural Research Service
Resource Type:: Other
Full Text:: 2013 SEED PRODUCTION RESEARCH AT OREGON STATE UNIVERSITY USDA

ScholarsArchive@OSU

Targeted Capture Sequencing in Whitebark Pine Reveals Range-Wide Demographic and Adaptive Patterns Despite Challenges of a Large, Repetitive Genome

Big fishery, big data, and little crabs: Using genomic methods to examine the seasonal recruitment patterns of early life stage Dungeness crab (Cancer magister) in the California Current Ecosystem

The Role of Complement in Cnidarian-Dinoflagellate Symbiosis and Immune Challenge in the Sea Anemone Aiptasia pallida

Diverse Evolutionary Trajectories for Small RNA Biogenesis Genes in the Oomycete Genus Phytophthora

Viral Outbreak in Corals Associated with an In Situ Bleaching Event: Atypical Herpes-Like Viruses and a New Megavirus Infecting Symbiodinium

Label-Free Proteomics Assisted by Affinity Enrichment for Elucidating the Chemical Reactivity of the Liver Mitochondrial Proteome toward Adduction by the Lipid Electrophile 4-hydroxy-2-nonenal (HNE)

2014 Seed production research at Oregon State University, USDA-ARS cooperating

2012 Seed production research at Oregon State University, USDA-ARS cooperating

Impact of postfire logging on soil bacterial and fungal communities and soil biogeochemistry in a mixed-conifer forest in central Oregon

2013 Seed production research at Oregon State University, USDA-ARS cooperating

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