The Oregon 4-H Carcass of Merit Program offers recognition to Oregon State University Extension 4-H members who breed and/or buy, feed, and raise animals whose carcasses meet the “ideal” for red meat: lean, early maturing, high yielding, and containing minimal external fat. This
publication was prepared for 4-H leaders and...
Barley (Hordeum vulgare L.) possesses a large and highly repetitive genome of 5.1 Gb that has hindered the development of a complete sequence. In 2012, the International Barley Sequencing Consortium released a resource integrating whole-genome shotgun sequences with a physical and genetic framework. However, because only 6278 bacterial artificial chromosome...
The Cobb Seamount Chain in the northeast Pacific basin records the composition of the Cobb hot spot for the past 33 Myr, as the migrating Juan de Fuca Ridge approached and ultimately overran it ca. 0.5 Myr ago. In this first comprehensive geochemical study of the Cobb chain, major and...
We give a new approach to coding sequence (CDS) density
estimation in genomic analysis based on the topological pressure, which
we develop from a well known concept in ergodic theory. Topological
pressure measures the ‘weighted information content’ of a finite word,
and incorporates 64 parameters which can be interpreted as...
Herbicide resistance is an exceptional marker to quantify gene flow. Quantification of pollen-, seed-, and vegetative propagule-mediated gene flow provides key weed biology information. Pollen-mediated gene flow influences the genetic variance within a population, the frequency of multiple or polygenic herbicide resistance, and the evolutionary dynamics of a species. Seed-mediated...
Many multispecies models have assumed that prey density determines per-capita predator consumption rates, following a functional response relationship. However, empirical evidence suggests that a predator’s diet can also be influenced by a variety of environmental factors, including interactions with other predators. We used diet and abundance data from National Marine...
Two diametric paradigms have been proposed to model the molecular co-evolution of microbial mutualists and their eukaryotic hosts. In one, mutualist and host exhibit an antagonistic arms race and each partner evolves rapidly to maximize their own fitness from the interaction at potential expense of the other. In the opposing...
Background: DNA cytosine methylation is an epigenetic modification that has been implicated in many biological processes. However, large-scale epigenomic studies have been applied to very few plant species, and variability in methylation among specialized tissues and its relationship to gene expression is poorly understood.
Results: We surveyed DNA methylation from...
Shotgun metagenomic DNA sequencing is a widely applicable tool for characterizing the functions that are encoded by microbial communities. Several bioinformatic tools can be used to functionally annotate metagenomes, allowing researchers to draw inferences about the functional potential of the community and to identify putative functional biomarkers. However, little is...