Index Catalog // ScholarsArchive@OSU

Assessing the Health of the U.S. West Coast with a Regional-Scale Application of the Ocean Health Index

Creator:: Halpern, Benjamin S., Longo, Catherine, Scarborough, Courtney, Hardy, Darren, Best, Benjamin D., Doney, Scott C., Katona, Steven K., McLeod, Karen L., Rosenberg, Andrew A., and Samhouri, Jameal F.
Abstract:: Management of marine ecosystems increasingly demands comprehensive and quantitative assessments of ocean health, but lacks a tool to do so. We applied the recently developed Ocean Health Index to assess ocean health in the relatively data-rich US west coast region. The overall region scored 71 out of 100, with sub-regions...
Resource Type:: Article

Comparative Genomics of Plant-Associated Pseudomonas spp.: Insights into Diversity and Inheritance of Traits Involved in Multitrophic Interactions

Creator:: Loper, Joyce E., Hassan, Karl A., Mavrodi, Dmitri V., Davis, Edward W., II, Lim, Chee Kent, Shaffer, Brenda T., Elbourne, Liam D. H., Stockwell, Virginia O., Hartney, Sierra L., Breakwell, Katy, Henkels, Marcella D., Tetu, Sasha G., Rangel, Lorena I., Kidarsa, Teresa A., Wilson, Neil L., van de Mortel, Judith E., Song, Chunxu, Blumhagen, Rachel, Radune, Diana, Hostetler, Jessica B., Brinkac, Lauren M., Durkin, A. Scott, Kluepfel, Daniel A., Wechter, W. Patrick, Anderson, Anne J., Kim, Young Cheol, Pierson, Leland S., III, Pierson, Elizabeth A., Lindow, Steven E., Kobayashi, Donald Y., Raaijmakers, Jos M., Weller, David M., Thomashow, Linda S., Allen, Andrew E., and Paulsen, Ian T.
Abstract:: We provide here a comparative genome analysis of ten strains within the Pseudomonas fluorescens group including seven new genomic sequences. These strains exhibit a diverse spectrum of traits involved in biological control and other multitrophic interactions with plants, microbes, and insects. Multilocus sequence analysis placed the strains in three sub-clades,...
Resource Type:: Article
Full Text:: Joyce E. Loper1,2*, Karl A. Hassan3, Dmitri V. Mavrodi4, Edward W. Davis II1, Chee Kent Lim3, Brenda T

Comparative Genomics of Plant-Associated Pseudomonas spp.: Insights into Diversity and Inheritance of Traits Involved in Multitrophic Interactions

Creator:: Loper, Joyce E., Hassan, Karl A., Mavrodi, Dmitri V., Davis, Edward W., II, Lim, Chee Kent, Shaffer, Brenda T., Elbourne, Liam D. H., Stockwell, Virginia O., Hartney, Sierra L., Breakwell, Katy, Henkels, Marcella D., Tetu, Sasha G., Rangel, Lorena I., Kidarsa, Teresa A., Wilson, Neil L., van de Mortel, Judith E., Song, Chunxu, Blumhagen, Rachel, Radune, Diana, Hostetler, Jessica B., Brinkac, Lauren M., Durkin, A. Scott, Kluepfel, Daniel A., Wechter, W. Patrick, Anderson, Anne J., Kim, Young Cheol, Pierson, Leland S., III, Pierson, Elizabeth A., Lindow, Steven E., Kobayashi, Donald Y., Raaijmakers, Jos M., Weller, David M., Thomashow, Linda S., Allen, Andrew E., and Paulsen, Ian T.
Abstract:: We provide here a comparative genome analysis of ten strains within the Pseudomonas fluorescens group including seven new genomic sequences. These strains exhibit a diverse spectrum of traits involved in biological control and other multitrophic interactions with plants, microbes, and insects. Multilocus sequence analysis placed the strains in three sub-clades,...
Resource Type:: Article
Full Text:: Joyce E. Loper1,2*, Karl A. Hassan3, Dmitri V. Mavrodi4, Edward W. Davis II1, Chee Kent Lim3, Brenda T

A broad-spectrum cloning vector that exists as both an integrated element and a free plasmid in Chlamydia trachomatis

Creator:: Garvin, Lotisha, Vande Voorde, Rebecca, Dickinson, Mary, Carrell, Steven, Hybiske, Kevin, and Rockey, Daniel
Abstract:: Plasmid transformation of chlamydiae has created new opportunities to investigate host–microbe interactions during chlamydial infections; however, there are still limitations. Plasmid transformation requires a replicon derived from the native Chlamydia plasmid, and these transformations are species-specific. We explored the utility of a broad host-range plasmid, pBBR1MCS-4, to transform chlamydiae, with...
Resource Type:: Article
Full Text:: GarvinID 1, Rebecca Vande Voorde1, Mary Dickinson2, Steven Carrell1, Kevin Hybiske2, Daniel RockeyID 1* 1

Regional Contingencies in the Relationship between Aboveground Biomass and Litter in the World’s Grasslands

Creator:: O’Halloran, Lydia R., Chu, Chengjin, Bakker, Jonathan D., Davies, Kendi F., Du, Guozhen, Firn, Jennifer, Hagenah, Nicole, Hofmockel, Kirsten S., Knops, Johannes M. H., Li, Wei, Melbourne, Brett A., Borer, Elizabeth T., Morgan, John W., Orrock, John L., Prober, Suzanne M., Stevens, Carly J., Seabloom, Eric W., MacDougall, Andrew S., Cleland, Elsa E., McCulley, Rebecca L., Hobbie, Sarah, Harpole, W. Stan, and DeCrappeo, Nicole M.
Abstract:: Based on regional-scale studies, aboveground production and litter decomposition are thought to positively covary, because they are driven by shared biotic and climatic factors. Until now we have been unable to test whether production and decomposition are generally coupled across climatically dissimilar regions, because we lacked replicated data collected within...
Resource Type:: Article
Full Text:: , W. Stan Harpole6, Nicole M. DeCrappeo7, Chengjin Chu8, Jonathan D. Bakker9, Kendi F. Davies10

CreasonAllisonBotanyPlantPathologyAnalysisGenomeSequences.pdf

Creator:: Creason, Allison L., Vandeputte, Olivier M., Savory, Elizabeth A., Davis, Edward W., II, Putnam, Melodie L., Hu, Erdong, Swader-Hines, David, Mol, Adeline, Baucher, Marie, Prinsen, Els, Zdanowska, Magdalena, Givan, Scott A., El Jaziri, Mondher, Loper, Joyce E., Mahmud, Taifo, and Chang, Jeff H.
Abstract:: Members of Gram-positive Actinobacteria cause economically important diseases to plants. Within the Rhodococcus genus, some members can cause growth deformities and persist as pathogens on a wide range of host plants. The current model predicts that phytopathogenic isolates require a cluster of three loci present on a linear plasmid, with...
Resource Type:: Article
Full Text:: . Vandeputte3., Elizabeth A. Savory1., Edward W. Davis II1,2, Melodie L. Putnam1, Erdong Hu1, David Swader

Effect of Climate on the Distribution of Fusarium spp. Causing Crown Rot of Wheat in the Pacific Northwest of the United States

Creator:: Poole, Grant J., Smiley, Richard W., Walker, Carl, Huggins, David, Rupp, Richard, Abatzoglou, John T., Garland-Campbell, Kimberly, and Paulitz, Timothy C.
Abstract:: Fusarium crown rot (FCR) is one of the most widespread root and crown diseases of wheat in the Pacific Northwest (PNW) of the United States. Our objectives were to characterize crown rot severity and distribution throughout the PNW by conducting a survey of 210 fields covering the diverse dryland wheat-producing...
Resource Type:: Article
Full Text:: distribution of F. pseudograminearum occurred in a greater frequency in areas of the PNW at lower elevations

An Online Database for Informing Ecological Network Models: http://kelpforest.ucsc.edu

Creator:: Beas-Luna, Rodrigo, Novak, Mark, Carr, Mark H., Tinker, Martin T., Black, August, Caselle, Jennifer E., Hoban, Michael, Malone, Dan, and Iles, Alison
Abstract:: Ecological network models and analyses are recognized as valuable tools for understanding the dynamics and resiliency of ecosystems, and for informing ecosystem-based approaches to management. However, few databases exist that can provide the life history, demographic and species interaction information necessary to parameterize ecological network models. Faced with the difficulty...
Resource Type:: Article
Full Text:: b le 1 . C o m p ar is o n an d e xa m p le s o f fi ve ca te g o ri e s o f e co

Development of Molecular Markers for Determining Continental Origin of Wood from White Oaks (Quercus L. sect. Quercus)

Creator:: Schroeder, Hilke, Cronn, Richard, Yanbaev, Yulai, Jennings, Tara, Mader, Malte, Degen, Bernd, and Kersten, Birgit
Abstract:: To detect and avoid illegal logging of valuable tree species, identification methods for the origin of timber are necessary. We used next-generation sequencing to identify chloroplast genome regions that differentiate the origin of white oaks from the three continents; Asia, Europe, and North America. By using the chloroplast genome of...
Resource Type:: Article
Full Text:: Berrang, Andy Bower; Britton Flash; Steven Forry; Ben Gombash; Mark Twery). Furthermore, we thank the

Comparison of submersible-survey and hydroacoustic-survey estimates of fish density on a rocky bank

Creator:: Starr, Richard M., Fox, David S., Hixon, Mark Anthony, Tissot, Brian N., Johnson, Gary E., and Barss, William H.
Abstract:: Submersible belt-transect surveys along a rocky bottom were combined with acoustic surveys of the water column to estimate depth distribution and density of fishes at Stonewall Bank, Oregon in the northeastern Pacific Ocean from September through October 1991. The objectives of the study were to determine the proportion of fish...
Resource Type:: Article
Full Text:: (L)- 0.9 log (f)- 62.0, where TS =target strength in decibels (dB); L =fish length (em); and f

ScholarsArchive@OSU

Assessing the Health of the U.S. West Coast with a Regional-Scale Application of the Ocean Health Index

Comparative Genomics of Plant-Associated Pseudomonas spp.: Insights into Diversity and Inheritance of Traits Involved in Multitrophic Interactions

Comparative Genomics of Plant-Associated Pseudomonas spp.: Insights into Diversity and Inheritance of Traits Involved in Multitrophic Interactions

A broad-spectrum cloning vector that exists as both an integrated element and a free plasmid in Chlamydia trachomatis

Regional Contingencies in the Relationship between Aboveground Biomass and Litter in the World’s Grasslands

CreasonAllisonBotanyPlantPathologyAnalysisGenomeSequences.pdf

Effect of Climate on the Distribution of Fusarium spp. Causing Crown Rot of Wheat in the Pacific Northwest of the United States

An Online Database for Informing Ecological Network Models: http://kelpforest.ucsc.edu

Development of Molecular Markers for Determining Continental Origin of Wood from White Oaks (Quercus L. sect. Quercus)

Comparison of submersible-survey and hydroacoustic-survey estimates of fish density on a rocky bank

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