Diets of juvenile coho Oncorhynchus kisutch and Chinook O. tshawytscha salmon
are made up primarily of winter-spawning fish taxa in the late-larval and early juvenile stages that
are undersampled in plankton and larger trawl nets. Although we have no direct measure of the
availability of fish prey important to juvenile...
The trophic habits, size and condition of yearling Chinook salmon (Oncorhynchus tshawytscha) caught early in their marine residence were examined during 19 survey years (1981–1985; 1998–2011). Juvenile salmon consumed distinct highly piscivorous diets in cold and warm ocean regimes with major differences between ocean regimes driven by changes in consumption...
Because ocean circulation impacts global heat transport, understanding the relationship between deep ocean circulation and climate is important for predicting the ocean's role in climate change. A common approach to reconstruct ocean circulation patterns employs the neodymium isotope compositions of authigenic phases recovered from marine sediments. In this approach, mild...
A substantial portion of the developed world's population is increasingly dependent on machines to make their way in the everyday world. For certain privileged groups, computers, cell phones, PDAs, Blackberries, and IPODs, all permitting the faster processing of information, are commonplace. In these populations, even exercise can be automated as...
The difference between the temperature of the ocean at 4-cm and 2-m depth was continuously monitored during a cruise to the coastal transition zone off Point Arena, California (38°58′N, 123°45′W), during June 1987. The two temperatures were coincident most of the time but diverged during one nearshore leg of the...
In the California Current coastal boundary zone, the spring transition between downwelling and upwelling conditions, along with the fluctuating structure of the Columbia River plume, creates highly dynamic interactions. In this study, we investigated whether the surface distribution of brachyuran larvae and ichthyoplankton would track the dynamics of the Columbia...
The solid solution of In₂Fe₂₋ₓGaₓCuO₇ (space group P6₃/mmc) was synthesized and investigated through X-ray diffraction and magnetic susceptibility studies. Limited changes to the lattice parameters were observed as a result of the similar ionic radii for Fe³⁺ and Ga³⁺ in the trigonal bipyramidal (TBP) crystallographic site. An increase in the...
The solid solutions of InGa₁₋ₓFeₓCuO₄, InFeCu₁₋ₓMgₓO₄, and InGa₁₋ₓFeₓCu₁₋ₓMgₓO₄ were
synthesized and characterized through the use of X – ray and neutron diffraction, and DC –
magnetism measurements. All compositions of InGa₁₋ₓFeₓCuO₄ are single phase and crystallize
in the R3m space group, but a transformation to the spinel InFeMgO₄ structure was...
In 2014, the California Current (~28˚–48˚N) saw average, or below average, coastal upwelling and relatively low productivity in most locations, except from 38˚–43˚N during June and July. Chlorophyll-a levels were low throughout spring and summer at most locations, except in a small region around 39˚N. Catches of juvenile rockfish (an...
In 2013, the California current was dominated by
strong coastal upwelling and high productivity. Indices
of total cumulative upwelling for particular coastal
locations reached some of the highest values on record.
Chlorophyll a levels were high throughout spring and
summer. Catches of upwelling-related fish species were
also high. After a...
This report reviews the state of the California Current System (CCS) between winter 2012 and spring 2013, and includes observations from Washington State to Baja California. During 2012, large-scale climate modes indicated the CCS remained in a cool, productive phase present since 2007. The upwelling season was delayed north of...
The state of the California Current System (CCS)
since spring 2011 has evolved in response to dissipation
of La Niña through spring and summer, resurgence of
cooler La Niña conditions in fall and winter, and finally
a transition towards ENSO-neutral conditions in spring
2012. The resurgence of La Niña was...
The state of the California Current system (CCS) since spring 2010 has evolved in response to the development of cooler La Nina following the dissipation of the relatively weak and short-lived El Nino event of 2009-2010. The 2009-2010 El Nino appears to have dissipated quite rapidly in early spring 2010,...
Global ocean phytoplankton biomass (C-phyto) and total particulate organic carbon (POC) stocks have largely been characterized from space using passive ocean color measurements. A space-based light detection and ranging (lidar) system can provide valuable complementary observations for C-phyto and POC assessments, with benefits including day-night sampling, observations through absorbing aerosols...
Coastal upwelling in the northern California Current
varies seasonally, with downwelling in winter and upwelling
in summer, resulting in pronounced variability in
hydrography, nutrients, phytoplankton biomass, and species
composition. Winter was characterized by moderate concentrations
of nitrate and silicate (averages of 10 and 18 μM,
respectively) and low concentrations of...
Wireless LANs (WLANs) have been widely adopted and are more convenient as they are inter-connected as wireless campus networks and wireless mesh networks. However, time-sensitive multimedia applications, which
have become more popular, could suffer from long end-to-end latency in WLANs.
This is due mainly to handoff delay, which in turn...
Satellite-derived data provide the temporal means and seasonal and nonseasonal
variability of four physical and biological parameters off Oregon and Washington
(41°–48.5°N). Eight years of data (1998–2005) are available for surface chlorophyll
concentrations, sea surface temperature (SST), and sea surface height, while six years of
data (2000–2005) are available for...
Nonlinear mesoscale eddies can influence biogeochemical cycles in the upper ocean through vertical and horizontal advection of nutrients and marine organisms. The relative importance of these two processes depends on the polarity of an eddy (cyclones versus anticyclones) and the initial biological conditions of the fluid trapped in the core...
The role of each habitat fish use is of great importance to the dynamics of populations. During
their early marine residence, Chinook salmon (Oncorhynchus tshawytscha), an anadromous fish
species, mostly inhabit estuaries but also use sandy beach surf zones and the coastal ocean.
However, the role of surf zones in...
Traditional risk-based analysis for levee planning focuses primarily on overtopping failure. Although many levees fail before overtopping, few planning studies explicitly include intermediate geotechnical failures in flood risk analysis. This study develops a risk-based model for two simplified levee failure modes: overtopping failure and overall intermediate geotechnical failure from through-seepage,...
We examined variability in growth rate during the larval stage of northern anchovy (Engraulis mordax) in response to physical and biological environmental factors in 2005 and 2006. The onset of spring upwelling was anomalously delayed by 2–3 months until mid-July in 2005; in contrast, spring upwelling in 2006 began as...
Eddies can influence biogeochemical cycles through a variety of mechanisms, including the excitation of vertical velocities and the horizontal advection of nutrients and ecosystems, both around the eddy periphery by rotational currents and by the trapping of fluid and subsequent transport by the eddy. In this study, we present an...
Some authors defending the "hereditarian" hypothesis with respect to differences in average IQ scores between populations have argued that the sorts of environmental variation hypothesized by some researchers rejecting the hereditarian position should leave discoverable statistical traces, namely changes in the overall variance of scores or in variance-covariance relating scores...
In 2005, the onset of spring conditions in the physics
of the coastal ocean (lowered sea level, spin-up of
vertically-sheared equatorward coastal jet) came about 50
days later than average off Newport Oregon, on May 24.
There was a further delay of 50 days before the subsurface
upwelled water penetrated...
ABSTRACT: Phytoplankton regulate internal pigment concentrations in response to light and nutrient availability. Chlorophyll a to phytoplankton carbon ratios (chl:C phyto) are commonly reported as a function of growth irradiance (Eg) for evaluating the photoacclimation response of phytoplankton. In contrast to most culture experiments, natural phytoplankton communities experience fluctuating environmental...
Parmelina quercina is a well-studied foliose macro-lichen found on rocks and trees in the Northern Hemisphere. Recent studies support multiple species within P. quercina based on material from Europe, North America and western Asia. The identities of Parmelina quercina s.lat. reported from eastern Asia and Alaska remain unknown. We compared...
Mesoscale physical oceanographic features, such as jets and eddies, can influence the structure of marine ecosystems. We used trophically transmitted parasite communities of pelagic fishes in the northern California Current to examine effects of physical oceanographic features on pelagic ecosystem structure. We tested the hypotheses that (1) oceanographic features associated...
Successfully shifting to a more piscivorous diet may be an important factor in the growth and survival of juvenile coho salmon Oncorhynchus kisutch and Chinook salmon O. tshawytscha during their first summer in the northern California Current. Nonmetric multidimensional scaling and cluster analysis of diets by size showed several distinct...
Hot spot–mid-ocean ridge interactions cause many of the largest structural and chemical anomalies in Earth’s ocean basins. Correlated geophysical and geochemical anomalies are widely explained by mantle plumes that deliver hot and compositionally distinct material toward and along mid-ocean ridges. Compositional anomalies are seen in trace element and isotope ratios,...
Predation by piscivorous marine fishes has been hypothesized to be a primary source of marine
mortality for Pacific Northwest juvenile salmon. During the springs and summers of 1998–2004, we collected predator and prey fishes (forage and juvenile salmonids) at the surface at night off the mouth of the Columbia River....
Large rivers represent gateways for the transport of
terrigenous and anthropogenic material to the coastal ocean.
Here we document a ∼700 km2 recirculation or bulge associated
with the Columbia River plume that retains recently discharged
river water sufficiently to create a regional bioreactor.
Fueled by a fluvial nitrate source, this...
This paper describes the atmospheric correction (AC) component of the Multi-Angle Implementation of Atmospheric Correction algorithm (MAIAC) which introduces a new way to compute parameters of the Ross-Thick Li-Sparse (RTLS) Bi-directional reflectance distribution function (BRDF), spectral surface albedo and bidirectional reflectance factors (BRF) from satellite measurements obtained by the Moderate...
We present molybdenum isotope and concentration data from 14 sites in the eastern Pacific from the
central California to the Peru margin. The environments studied have been chosen to represent a broad
range in oxidation-reduction (redox) potential, which provide a framework for the behavior of this redox-sensitive
element. Manganese-rich hemipelagic...
Upwelling in eastern boundary current systems is a primary driver of ecosystem productivity. Typically, peak upwelling occurs during spring and summer, but winter upwelling may also be important to ecosystem functions. In this study, we investigated the hypothesis that winter and spring/summer upwelling, operating through indirect trophic interactions, are important...
Relative to extensive research on the freshwater stages of steelhead Oncorhynchus mykiss life history, little is known about the species’ estuarine and early marine phases despite the decline of numerous populations, including several from the Columbia River. Comparisons of the distribution, diet, and growth of juvenile steelhead collected during surveys...
Intraseasonal variability of boreal summer rainfall and winds in tropical West Africa and the east Atlantic is examined using daily Tropical Rainfall Measuring Mission (TRMM) precipitation and the NCEP–NCAR reanalysis during 1998–2006. Intraseasonal precipitation variability is dominated by two significant spectral peaks at time scales near 15 and 50 days,...
Phytoplankton species were enumerated from 72 samples collected biweekly during the upwelling season (May to August) of 2001−2010 to test for effects of interannual variations in upwelling and decadal basin-scale variability on phytoplankton species composition and community structure. Cluster analysis of phytoplankton community structure identified 7 groups; 1 group was...
The Northern California Current (NCC) is a seasonally productive and open ecosystem. It is home to both a diverse endemic community and to seasonally transient species. Productivity and food web structure vary seasonally, interannually, and decadally due to variability in coastal upwelling, climate-scale physical processes, and the migratory species entering...
The solid solutions of chlorapatite compounds Ba₅Mn₃−[subscript]xV[subscript]xO₁₂Cl (x = 0–3.0) and Ba₅Mn₃−[subscript]xP[subscript]xO₁₂Cl (x = 0–3.0) have been synthesized through solid state reactions and Pechini or sol–gel method using citric acid. The colors of the samples change from white (x = 3.0) through turquoise (x = 1.5) to dark green (x...
Acoustic echo sounders designed to map and discriminate organisms in the water column have primarily been deployed on ships. Because of acoustic attenuation of higher frequencies used to detect and discriminate micronekton and nekton, this has effectively restricted the range of this information to the upper water column. In an...
Raman scattering can be a significant contributor to the emergent radiance spectrum from the surface ocean. Here, we present an analytical approach to directly estimate the Raman contribution to remote sensing reflectance, and evaluate its effects on optical properties estimated from two common semi analytical inversion models. For application of...
The community of trophically transmitted marine parasites of juvenile coho (Oncorhynchus kisutch) and Chinook
(Oncorhynchus tshawytscha) salmon across 8 years (2002–2009) was related to indices of physical and biological ocean conditions
and adult returns. When the biomass of lipid-poor, southern origin copepods in the coastal ocean was high during juvenile...
The relationship of running biomechanics, footwear, and injury has been studied extensively in adults. There has been little research on the effects of footwear on running biomechanics in youth.
Riverine plumes in nearshore coastal waters are areas of enhanced production and accumulation of prey and may increase availability of food during a critical period of juvenile salmon survival and hence serve as a nursery area for these juveniles. Physical and biological sampling was conducted along a cross-shelf transect through...
Nearshore hypoxia along the coast of Oregon and Washington is a seasonal phenomenon that has generated concern among scientists studying this temperate upwelling ecosystem. These waters are affected by coastal upwelling-induced hypoxia mainly during late summer and fall, but the effects of low oxygen levels on fish and invertebrate communities,...
Many species of Populus, particularly cottonwoods of sections Aigeiros and Tacamahaca, remain recalcitrant to genetic transformation. We demonstrate that transgenic trees can be readily produced in several poplar genotypes using wild-type Agrobacterium rhizogenes. Hairy roots were produced in a variety of clones that included Populus trichocarpa Torr. & A. Gray,...
Semidwarfism has been used extensively in row crops and horticulture to promote yield, reduce lodging, and improve harvest index, and it might have similar benefits for trees for short-rotation forestry or energy plantations, reclamation, phytoremediation, or other applications. We studied the effects of the dominant semidwarfism transgenes GA Insensitive (GAI)...
Reconciling rates of organic carbon export from the euphotic zone with the consumption of organic material in the dark ocean remains one of the major quantitative uncertainties of the ocean carbon cycle. Euphotic zone net community production (NCP) provides one broad constraint on export flux and potential carbon drawdown. However,...
It is hypothesized that the circulation of the tropical Pacific Ocean and atmosphere satisfies the equations of a simple coupled model to within errors having specified covariances, and that the Tropical Atmosphere–Ocean array (TAO) measures the circulation to within errors also having specified covariances. This hypothesis is tested by finding...
Biophysical studies of the interaction of peptides with model membranes provide a simple yet effective approach to understand the transport of peptides and peptide based drug carriers across the cell membrane. Herein, the authors discuss the use of self-assembled monolayers fabricated from the full membrane-spanning thiol (FMST) 3-((14-((40-((5-methyl-1-phenyl-35-(phytanyl)oxy- 6,9,12,15,18,21,24,27,30,33,37-undecaoxa-2,3-dithiahenpentacontan-51-yl)oxy)-[1,10-biphenyl]-4- yl)oxy)tetradecyl)oxy)-2-(phytanyl)oxy...
Data from Geostationary Operational Environmental
Satellites are used to study the seasonal evolution of
temperature fronts in the northern California Current
System (CCS), focusing on the interactions with
topographic features. Fronts first appear close to the coast
in response to upwelling winds, moving offshore with the
continuous input of energy...
The land area required for a marker-aided selection (MAS) program to break-even (i.e., have equal costs and benefits) was estimated using computer simulation for coastal Douglas-fir (Pseudotsuga menziesii (Mirb.) Franco) in the Pacific Northwestern United States. We compared the selection efficiency obtained when using an index that included the phenotype...
The feeding habits of pelagic, juvenile rockfishes (Sebastes spp.) collected off Oregon in 2002, and Oregon and Washington in 2006, were examined using stomach content and stable isotope analyses. Sampling occurred along a series of transects across the shelf between Crescent City, California (Lat. 41°54.0′), and Newport, Oregon (Lat. 44°39.0′),...
Ocean conditions can greatly impact lower trophic level prey assemblages in marine ecosystems, with effects of ocean state propagating to higher trophic levels. In many regions throughout their range, common murre (Uria aalge) exhibit narrow dietary breadth in feeding chicks and therefore are vulnerable to recruitment failures of dominant prey...
Predators must consume enough prey to support costly events, such as reproduction. Meeting high energetic requirements is particularly challenging for migrating baleen whales as their feeding seasons are typically restricted to a limited temporal window and marine prey are notoriously patchy. We assessed the energetic value of the six most...
The species composition, distribution and concentration of ichthyoplankton off the central Oregon coast in the NE Pacific Ocean were examined during 2000 and 2002 to investigate annual, seasonal, vertical, and cross-shelf variability. Larval concentrations were also analyzed in relation to water temperature and salinity. The 281 samples collected from 5...
As fisheries management shifts to an ecosystem-based approach, understanding energy pathways and trophic relationships in the Northern California Current (NCC) will become increasingly important for predictive modeling and understanding ecosystem response to changing ocean conditions. In the NCC, pelagic forage fishes are a critical link between seasonal and interannual variation...
Large river plumes modify coastal environments and can impact production across multiple trophic levels. From 1999 to 2009, the
assemblages of forage fish, predator fish, and other pelagic nekton were monitored in coastal waters associated with the Columbia
River plume. Surveys were conducted at night to target vertically migrating species,...
Habitat fragmentation studies have produced complex results that are challenging
to synthesize. Inconsistencies among studies may result from variation in
the choice of landscape metrics and response variables, which is often compounded
by a lack of key statistical or methodological information. Collating
primary datasets on biodiversity responses to fragmentation in...
We inventoried lichens in Lake Clark (LACL) and Katmai (KATM) National Parks and Preserves. We assembled the known information on lichens in these parks by combining field, herbarium, and literature studies. Our results provide baseline data on lichen occurrence that may be used in resource condition assessments, vulnerability assessments, long-term...
Seabirds have often been proposed as environmental indicators. Beached bird data may provide an additional data source and such data is efficacious because it can reliably be collected by volunteers. In addition to anthropogenic factors, such as oil spills, changes in the ocean-atmosphere can affect carcass beaching rate in 3...
Fisheries oceanography is the study of ecological relationships between fishes and the dynamics of their marine environments and aims to characterize the physical, chemical, and biological factors that affect the recruitment and abundance of harvested species. A recent push within the fisheries management community is toward ecosystem-based management. Here, we...
In late spring of 2010, the northern California Current (NCC) experienced a transition from El Niño to La Niña conditions resulting in anomalous distributions and concentrations within the ichthyoplankton community. We analyzed larval fish data collected during the four months before and after this transition and compared them to data...
The measurement of phytoplankton carbon (C[subscript]phyto) in the field has been a long-sought but elusive goal in oceanography. Proxy measurements of C[subscript]phyto have been employed in the past, but are subject to many confounding influences that undermine their accuracy. Here we report the first directly measured C[subscript]phyto values from the...
The taxonomic composition, distribution, concentration, and community structure of ichthyoplankton off the Oregon and Washington coasts were examined in 2004-2009 to investigate annual, seasonal, latitudinal, and cross-shelf variability. Larval concentrations and community structure were also analyzed in relation to several local and larger-scale environmental variables. The dominant taxa, comprising 94%...
We investigated 32 net primary productivity (NPP) models by assessing skills to reproduce integrated NPP in the Arctic Ocean. The models were provided with two sources each of surface chlorophyll-a concentration (chlorophyll), photosynthetically available radiation (PAR), sea surface temperature (SST), and mixed-layer depth (MLD). The models were most sensitive to...
The Critical Depth Hypothesis formalized by Sverdrup in 1953 posits that
vernal phytoplankton blooms occur when surface mixing shoals to a depth shallower than a
critical depth horizon defining the point where phytoplankton growth exceeds losses. This
hypothesis has since served as a cornerstone in plankton ecology and reflects the...
Science has a critical role to play in guiding more sustainable development trajectories. Here, we present the Sustainable Amazon Network (Rede Amazonia Sustentavel, RAS): a multidisciplinary research initiative involving more than 30 partner organizations working to assess both social and ecological dimensions of land-use sustainability in eastern Brazilian Amazonia. The...