This paper reports the findings from a study made of the potential financial returns from nine alternative silvicultural prescriptions applied to four case-study stands of second growth in coastal British Columbia. The objectives were to compare prescriptions based on partial cutting with conventional clear-cutting and to explore the effects of...
For 30 years, the pathogen Haplosporidium nelsoni (MSX) has been causing serious mortalities of eastern oysters Crassostrea virginica in the Delaware and Chesapeake bays. Its life cycle is largely unknown, and methods for control are wanting. Breeding of resistant eastern oyster strains, at this time, offers the best hope for...
Uncertainty in above ground forest biomass (AGB) estimates at broad-scale depends primarily on three sources of error that interact and propagate: measurement error, model error, and sampling error. Using Monte Carlo simulations, we compare the total propagated error for two sets of regional-level component equations for lodgepole pine AGB, and...
Species composition within ecological assemblages can drive disease dynamics including pathogen invasion, spread, and persistence. In multi-host pathogen systems, interspecific variation in responses to infection creates important context dependency when predicting the outcome of disease. Here, we examine the responses of three sympatric host species to a single fungal pathogen,...
The range in the projections of future climate warming can be attributed to the inherent uncertainty in the representation of climate model parameters and processes. In this study, we assess the effect of uncertainty in climate sensitivity and ocean heat uptake on the rate of future climate change. We apply...
We tested closure between in situ radiometric and absorption coefficient measurements by using a nearly backscattering-independent remote-sensing reflectance model that employs the remote-sensing reflectance at three wavelengths. We show that only a small error is introduced into the closure model when the proper functional relationships of f/Q and the backscattering...
The dependence of the reflectance at the surface on the vertical structure of optical parameters is derived from first principles. It is shown that the depth dependence is a function of the derivative of the round trip attenuation of the downwelling and backscattered light. Previously the depth dependence was usually...
Coupled climate–carbon models have shown the potential for large feedbacks between climate change, atmospheric CO₂ concentrations, and global carbon sinks. Standard metrics of this feedback assume that the response of land and ocean carbon uptake to CO₂ (concentration–carbon cycle feedback) and climate change (climate–carbon cycle feedback) combine linearly. This study...
Optical properties of dissolved (colored dissolved organic material (CDOM)) and particulate matter and hydrographic measurements were obtained at the Mid-Atlantic Bight during the fall of 1996 and the spring of 1997 as part of the Coastal Mixing and Optics experiment. To assess the temporal and spatial variability, time series were...
Straying by hatchery-reared salmon is a major concern for conservation and recovery of many salmon populations. Fisheries managers have attempted to minimize negative ecological and genetic interactions between hatchery and wild fish by using parr-smolt acclimation facilities to ensure successful olfactory imprinting and homing fidelity. However, the effectiveness of offsite...
Biodiversity losses are occurring worldwide due to a combination of stressors. For example, by one estimate, 40% of amphibian species are vulnerable to extinction, and disease is one threat to amphibian populations. The emerging infectious disease chytridiomycosis, caused by the aquatic fungus Batrachochytrium dendrobatidis (Bd), is a contributor to amphibian...
Ocean Drilling Program Hole 896A (1°13.01'N, 83°43.39'W) is
in 3440 m of water east of the Galapagos Platform in the equatorial
eastern Pacific Ocean. At this site in 5.9 Ma crust, basement rocks
were recovered over the depth range of 195.1 meters below seafloor
(mbsf) to 469 mbsf. These rocks...
Ultraviolet-protective compounds, such as mycosporine-like amino acids (MAAs) and related gadusols produced by some bacteria, fungi, algae, and marine invertebrates, are critical for the survival of reef-building corals and other marine organisms exposed to high-solar irradiance. These compounds have also been found in marine fish, where their accumulation is thought...
Zooplankton fecal pellet flux is a highly variable component of the biological carbon pump. While fecal pellets can comprise 0 to nearly 100% of particulate organic carbon collected in sediment traps, mechanisms for this variability remain poorly understood. Fecal pellet carbon flux is a complex function of several variables. We...
Contributing to the worldwide biodiversity crisis are emerging infectious diseases, which can lead to extirpations and extinctions of hosts. For example, the infectious fungal pathogen Batrachochytrium dendrobatidis (Bd) is associated with worldwide amphibian population declines and extinctions. Sensitivity to Bd varies with species, season, and life stage. However, there is...
Mammalian cysteine dioxygenase (CDO) is a mononuclear non-heme iron protein that catalyzes 2 the conversion of cysteine (Cys) to cysteine sulfinic acid (CSA) by an unclarified mechanism. 3 One structural study revealed a Cys-persulfenate (or Cys-persulfenic acid) formed in the active 4 site, but quantum mechanical calculations have been used...
Measurements of ice water content (IWC) and
mean ice-crystal size and concentration made by two in-situ
probes, C, VI and PVM, were compared on the DC-8 aircraft
during SUCCESS flights in orographic ice clouds. The
comparison of 1WC in these wave clouds, that formed at
temperatures of about -38 °C...
Ligand activation of the aryl hydrocarbon (AHR) has profound effects upon the immunological status of the gastrointestinal tract, establishing and maintaining signaling networks, which facilitate host-microbe homeostasis at the mucosal interface. However, the identity of the ligand(s) responsible for such AHR-mediated activation within the gut remains to be firmly established....
Spectral attenuation and absorption coefficients of particulate matter and collocated hydrographic measurements were obtained in the Mid-Atlantic Bight during the fall of 1996 and the spring of 1997 as part of the Coastal Mixing and Optics experiment. Within the bottom boundary layer (BBL) the magnitude of the beam attenuation decreased...
The Northern California Current (NCC) is a seasonally productive and open ecosystem. It is home to both a diverse endemic community and to seasonally transient species. Productivity and food web structure vary seasonally, interannually, and decadally due to variability in coastal upwelling, climate-scale physical processes, and the migratory species entering...
The temperature and salt dependencies of absorption by liquid water (H₂O) and heavy water (D₂O) were
determined using a hyperspectral absorption and attenuation meter (WET Labs, AC-S). Sodium chloride
(NaCl) was used as a proxy for seawater salts. There was no significant temperature (ψₜ) or salt (ψₛ)
dependency of absorption...
During the Ice in Clouds Experiment–Layer Clouds (ICE-L), aged biomass-burning particles were identified within two orographic wave cloud regions over Wyoming using single-particle mass spectrometry and electron microscopy. Using a suite of instrumentation, particle chemistry was characterized in tandem with cloud microphysics. The aged biomass-burning particles comprised ~30%–40% by number...
A case study of new particle formation in the region downwind of a mesoscale convective system stretching across much of the central United States is presented. Airborne measurements were made of condensation nuclei (CN), cloud particle surface area, water vapor, and other gases. CN concentrations were greatly enhanced above and...
New seafloor mapping and sampling demonstrates that the eruption of the high-Ca boninites is clearly associated with rifting of the northern Tonga ridge and the northern Lau Basin at the northern termination of the Tonga Trench. There is very strong evidence for OIB plume related mantle sources involved in the...
The farnesoid X receptor (FXR) regulates bile acid, lipid and glucose metabolism. Here we show that treatment of mice with glycine-β-muricholic acid (Gly-MCA) inhibits FXR signalling exclusively in intestine, and improves metabolic parameters in mouse models of obesity. Gly-MCA is a selective high-affinity FXR inhibitor that can be administered orally...
The farnesoid X receptor (FXR) regulates bile acid, lipid and glucose metabolism. Here we show that treatment of mice with glycine-b-muricholic acid (Gly-MCA) inhibits FXR signalling exclusively in intestine, and improves metabolic parameters in mouse models of obesity. Gly-MCA is a selective high-affinity FXR inhibitor that can be administered orally...
The polycyclic aromatic hydrocarbon (PAH), benzo[a]pyrene (BaP), was compared to dibenzo[def,p]chrysene (DBC) and combinations of three environmental PAH mixtures (coal tar, diesel particulate and cigarette smoke condensate) using a two stage, FVB/N mouse skin tumor model. DBC (4 nmol) was most potent, reaching 100% tumor incidence with a shorter latency...
Fossil fuel emissions aside, temperate North America is a net sink of carbon dioxide at present¹⁻³. Year-to-year variations in this carbon sink are linked to variations in hydroclimate that affect net ecosystem productivity³,⁴. The severity and incidence of climatic extremes, including drought, have increased as a result of climate warming⁵⁻⁸....
Ice concentrations in orographic wave clouds at temperatures between −24° and −29°C were shown to be related to aerosol characteristics in nearby clear air during five research flights over the Rocky Mountains. When clouds with influence from colder temperatures were excluded from the dataset, mean ice nuclei and cloud ice...
We report new geochemical data for boninites and backarc basin-type basalts recovered from the northern termination of the Tonga trench and Lau Basin. Boninitic pillow lavas, ranging from high-Mg compositions to andesites and dacites, have been erupted within large submarine volcanic edifices (calderas and volcanoes) associated with active rifting of...
During the Ice in Clouds Experiment‐Layer Clouds (ICE‐L), dry lakebed, or playa,
salts from the Great Basin region of the United States were observed as cloud nuclei in
orographic wave clouds over Wyoming. Using a counterflow virtual impactor in series with
a single‐particle mass spectrometer, sodium‐potassium‐magnesium‐calcium‐chloride
salts were identified as...
Since the end of the Cold War, the US Navy has had an increasing interest in continental shelves and slopes as
operational areas. To work in such areas
requires a good understanding of ocean
acoustics, coastal physical oceanography,
and, in the modern era, autonomous
underwater vehicle (AUV) operations.
Each area...
Increasingly, objectives for forests with moderate- or mixed-severity fire regimes are to restore successionally diverse landscapes that are resistant and resilient to current and future stressors. Maintaining native species and characteristic processes requires this successional diversity, but methods to achieve it are poorly explained in the literature. In the Inland...
The 2014 Working Group on California Earthquake Probabilities (WGCEP 2014) presents time-dependent earthquake probabilities for the third Uniform California Earthquake Rupture Forecast (UCERF3). Building on the UCERF3 time-independent model published previously, renewal models are utilized to represent elastic-rebound-implied probabilities. A new methodology has been developed that solves applicability issues in...
The 2014 Working Group on California Earthquake Probabilities
(WGCEP14) present the time-independent component of the Uniform California
Earthquake Rupture Forecast, Version 3 (UCERF3), which provides authoritative
estimates of the magnitude, location, and time-averaged frequency of potentially
damaging earthquakes in California. The primary achievements have been to relax
fault segmentation and...
Most of the policy debate surrounding the actions needed to mitigate and adapt to anthropogenic climate change has been framed by observations of the past 150 years as well as climate and sea-level projections for the twenty-first century. The focus on this 250-year window, however, obscures some of the most...
Conservation of wildlife depends on an understanding of the interactions between animal movements and key landscape factors. Habitat requirements of wide-ranging species often vary spatially, but quantitative assessment of variation among replicated studies at multiple sites is rare. We investigated patterns of space use for 10 populations of two closely...
Increasing public awareness that the Cascadia subduction zone in the Pacific Northwest is capable of great earthquakes (magnitude 9 and greater) motivates the Cascadia Initiative, an ambitious onshore/offshore seismic and geodetic experiment that takes advantage of an amphibious array to study questions ranging from megathrust earthquakes, to volcanic arc structure,...
The Energy Frontier Research Center (EFRC) for
Solid-State Lighting Science (SSLS) is one of 46 EFRCs initiated in
2009 to conduct basic and use-inspired research relevant to energy
technologies. The overarching theme of the SSLS EFRC is the
exploration of energy conversion in tailored photonic structures. In
this article we...
Based on regional-scale studies, aboveground production and litter decomposition are thought to positively covary, because they are driven by shared biotic and climatic factors. Until now we have been unable to test whether production and decomposition are generally coupled across climatically dissimilar regions, because we lacked replicated data collected within...
In 2006, NASA led a field campaign to investigate the factors that control the fate of African easterly waves (AEWs) moving westward into the tropical Atlantic Ocean. Aircraft and surface-based equipment were based on Cape Verde's islands, helping to fill some of the data void between Africa and the Caribbean....
Human alterations to nutrient cycles[superscript 1,2] and herbivore communities³⁻⁷
are affecting global biodiversity dramatically². Ecological theory predicts
these changes should be strongly counteractive: nutrient addition
drives plant species loss through intensified competition for
light, whereas herbivores prevent competitive exclusion by increasing
ground-level light, particularly in productive systems[superscript 8,9]. Here we...
More than US$21 billion is spent annually on biodiversity conservation. Despite their importance for preventing or slowing extinctions and preserving biodiversity, conservation interventions are rarely assessed systematically for their global impact. Islands house a disproportionately higher amount of biodiversity compared with mainlands, much of which is highly threatened with extinction....
Agriculture is now facing the ‘perfect storm’ of climate change, increasing costs of fertilizer and rising food demands from a larger and wealthier human population. These factors point to a global food deficit unless the efficiency and resilience of crop production is increased. The intensification of agriculture has focused on...
The aim of this work is to review current knowledge relating the established cancer hallmark, sustained cell proliferation to the existence of chemicals present as low dose mixtures in the environment. Normal cell proliferation is under tight control, i.e. cells respond to a signal to proliferate, and although most cells...
Citizen-science projects engage volunteers to gather or process data to address scientific questions. But
citizen-science projects vary in their ability to contribute usefully for science, conservation, or public policy.
eBird has evolved from a basic citizen-science project into a collective enterprise, taking a novel
approach to citizen science by developing...
Earth system processes exhibit complex patterns across time, as do the models that seek to replicate these processes. Model output may or may not be significantly related to observations at different times and on different frequencies. Conventional model diagnostics provide an aggregate view of model–data agreement, but usually do not...
Estimates of species' vital rates and an understanding of the factors affecting those parameters over time and space can provide crucial information for management and conservation. We used mark–recapture, reproductive output, and territory occupancy data collected during 1985–2013 to evaluate population processes of Northern Spotted Owls (Strix occidentalis caurina) in...
Genome instability is a prerequisite for the development of cancer. It occurs when genome maintenance systems fail to safeguard the genome’s integrity, whether as a consequence of inherited defects or induced via exposure to environmental agents (chemicals, biological agents and radiation). Thus, genome instability can be defined as an enhanced...
As managers of agricultural and natural resources are confronted with uncertainties in global change impacts, the complexities associated with the interconnected cycling of nitrogen, carbon, and water present daunting management challenges. Existing models provide detailed information on specific sub-systems (e.g., land, air, water, and economics). An increasing awareness of the...