An understanding of the interactions among local environmental factors (e.g., physical habitat and water quality) and aquatic assemblages is essential to conserve biodiversity in tropical and subtropical headwater streams. We evaluated the relative importance of multiple physical and chemical habitat variables that influence the richness of Ephemeroptera, Plecoptera, and Trichoptera...
Macroinvertebrates are important for processing leaf detritus in temperate streams, but studies about their role in tropical streams often present conflicting results. Via digestive tract analyses, we assessed the diets of Phylloicus sp. larvae (Trichoptera: Calamoceratidae), collected from streams of two southeastern Brazil river basins (Araguari, Sao Francisco). We classified...
Assessing the ecological impacts of anthropogenic pressures is a key task in environmental management. Multimetric indices (MMIs), based on aquatic assemblage responses to anthropogenic pressures, have been used increasingly throughout the world. The MMI approach is a low-cost, rapid field method that produces an aquatic condition index that responds precisely...
Most studies dealing with the use of ecological indicators and other applied ecological research rely on some definition or concept of what constitutes least-, intermediate- and most-disturbed condition. Currently, most rigorous methodologies designed to define those conditions are suited to large spatial extents (nations, ecoregions) and many sites (hundreds to...
Landscape and site-scale data analyses aid
the interpretation of biological data and thereby help
us develop more cost-effective natural resource management
strategies. Our study focused on environmental
influences on stream assemblages and we
evaluated how three classes of environmental variables
(geophysical landscape, land use and cover, and
site habitat), influence...
Reservoirs can have both positive and negative effects on differing fish species depending on the species concerned and reservoir morphology, flow regime, and basin location. We assessed the influence of limnological zones on the ichthyofauna of three large Neotropical reservoirs in two different river basins. We sampled fish through use...
Palm leaves represent one of the most important non-timber forest products in tropical and subtropical regions. Brahea aculeata is an endemic palm of northwest Mexico, whose leaves are intensively exploited for roof thatch and handcrafts. As part of a long-term defoliation experiment, we evaluated the effects of different leaf harvest...
Two TaqMan-based real-time One-Step RT-PCR assays were developed for the rapid and efficient detection
of Raspberry bushy dwarf virus (RBDV) and Raspberry leaf mottle virus (RLMV), two of the most common
raspberry viruses in North America and Europe. The primers and probes were designed from conserved
fragments of the polymerase...
Raspberry latent virus (RpLV) is a newly characterized reovirus found in commercial raspberry fields in the Pacific Northwest (PNW). Thus far, all members of the plant reoviruses are transmitted in a replicative, persistent manner by several species of leafhoppers or planthoppers. After several failed attempts to transmit RpLV using leafhoppers,...
The impact of herbivores on primary producers in differing oceanographic regimes is a matter of intense ecological interest due to ongoing changes in their abundance, that of their predators, and anthropomorphic alteration of nutrient cycles and climatic patterns. Interactions between productivity and herbivory in marine habitats have been studied on...
We present the results of a set of numerical simulations of long-duration gamma-ray burst
jets aimed at studying the effect of a variable engine on the peak frequency of the photospheric
emission. Our simulations follow the propagation of the jet inside the progenitor star,
its break-out, and the subsequent expansion...
Accurately estimating evapotranspiration (ET) at large spatial scales is essential to our understanding of land-atmosphere coupling and the surface balance of water and energy. Comparisons between remote sensing-based ET models are difficult due to diversity in model formulation, parametrization and data requirements. The constituent components of ET have been shown...
Despite being well adapted for feeding in cold water on their North Atlantic feeding
grounds, Atlantic bluefin tuna undertake long migrations to reach warm, low productivity spawn -
ing grounds in the Gulf of Mexico and Mediterranean Sea. Environmental conditions within
spawning areas have been presumed to benefit larval survival,...
Background: Pearl millet [Pennisetum glaucum (L.) R. Br.] is a widely cultivated drought-and high-temperature tolerant C4 cereal grown under dryland, rainfed and irrigated conditions in drought-prone regions of the tropics and sub-tropics of Africa, South Asia and the Americas. It is considered an orphan crop with relatively few genomic and...
The cotton bollworm, Helicoverpa armigera (Hubner) is one of the most serious insect pest species to evolve resistance against many insecticides from different chemical classes. This species has evolved resistance to the pyrethroid insecticides across its native range and is becoming a truly global pest after establishing in South America...
Correction
21 Jun 2012: Verde I, Bassil N, Scalabrin S, Gilmore B, Lawley CT, et al. (2012) Correction: Development and Evaluation of a 9K SNP Array for Peach by Internationally Coordinated SNP Detection and Validation in Breeding Germplasm. PLOS ONE 7(6): 10.1371/annotation/33f1ba92-c304-4757-91aa-555de64a0768.
Microphysical and chemical aerosol measurements collected during DYCOMS‐II research flights in marine stratocumulus clouds near San Diego in 2001 were used to evaluate the partitioning of 18 organic and elemental components between droplet residuals and unactivated particles. Bulk submicron particle (between 0.2 and 1.3 μm dry diameter) and droplet residual...
In a discussion of the turbulence characteristics of patches of 'microstructure' in the ocean, the hypothesis advocated by Gibson (1982), that the patches are produced by very rare but extremely powerful turbulence-generating events which usually have 'fossilized' before their observation, is contrasted with the hypothesis of a turbulence field driven...
Pursuit of the triple bottom line of economic, community and ecological sustainability has increased the complexity of fishery management; fisheries assessments require new types of data and analysis to guide science-based policy in addition to traditional biological information and modeling. We introduce the Fishery Performance Indicators (FPIs), a broadly applicable...
This paper presents the results from the Deflo-hydroacoustic experiment in the Southern Indian Ocean using three autonomous underwater hydrophones, complemented by two permanent hydroacoustic stations. The array monitored for 14 months, from November 2006 to December 2007, a 3000 x 3000 km wide area, encompassing large segments of the three...
A laboratory instrument, the Natural Fluorescence Chemostat, was developed to measure the natural fluorescence of phytoplankton cultures. With this instrument, the physical and chemical environment of a culture can be manipulated with respect to temperature, pH, nutrient delivery rate, and light intensity, while the natural fluorescence and a weak stimulated...
The introduced Asian parasitic bopyrid isopod, Orthione griffenis, was first discovered on the Pacific coast of North America in Washington in 1988 and next in California in 1992. The range of Orthione presently extends from British Columbia to Baja California, where it infests at least two species of the native...
Ground level electric fields arising from geomagnetic disturbances (GMDs) are used by the electric power industry to calculate geomagnetically induced currents (GICs) in the power grid. Current industry practice is limited to electric fields associated with 1‐D ground electrical conductivity structure, yet at any given depth in the crust and...
STEM is evolving as a discipline and includes challenging educational practices. Teachers need support to address these challenges and implement STEM. We present an intervention in which a STEM coach supported teachers implementing STEM across a school district. The coach role was valued for (1) connecting to outside resources, (2)...
In some species, sperm is stored within the female reproductive tract for months to years, and yet remains viable to fertilize eggs and produce offspring. Female red-sided garter snakes store sperm for over seven months of winter dormancy. In previous work we demonstrated that these stored sperm account for an...
Phytoplankton alter the absorption of solar radiation, affecting upper ocean temperature and circulation. These changes, in turn, influence the atmosphere through modification of the sea surface temperature (SST). To investigate the effects of the present-day phytoplankton concentration on the atmosphere, an atmospheric general circulation model was forced by SST changes...
Monte Carlo simulations are carried out to determine the error in the inversion of backscattering from remotely sensed reflectance when geometrical shape factors of the light field are assumed to be unity. The results show that error in backscattering inversion can vary from a 40% overestimation to a 20% underestimation...
The inter-relationships among δ¹³C and δ¹⁸O in tree ring cellulose and ring width have the potential to illuminate long-term physiological and environmental information in forest stands that have not been monitored. We examine how within-stand competition and environmental gradients affect ring widths and the stable isotopes of cellulose. We utilize...
Sediments associated with hydrothermal venting, methane seepage and large organic falls such as whale, wood and plant detritus create deep-sea networks of soft-sediment habitats fueled, at least in part, by the oxidation of reduced chemicals. Biological studies at deep-sea vents, seeps and organic falls have looked at macrofaunal taxa, but...
Surface transient storage (STS) and hyporheic transient storage (HTS) have functional significance in stream ecology and hydrology. Currently, tracer techniques couple STS and HTS effects on stream nutrient cycling; however, STS resides in localized areas of the surface stream and HTS resides in the hyporheic zone. These contrasting environments result...
A Lagrangian drifter was deployed in a cold filament off northern California as part of the Coastal Transition Zone program. The drifter was equipped with an optical package (consisting of a spectroradiometer, a fluorometer, and a beam transmissometer) suspended at 8.5-m depth and a water sampler suspended at 16.3-m depth....
Large ignimbrite flare-ups provide records of profound crustal modification during batholith formation at depth. The locations of source calderas and volumes and ages of the eruptions must be determined to develop models for the tectonomagmatic processes that occur during these events. Although high-precision isotopic ages of the ignimbrites are critical,...
An attenuated strain of Flavobacterium psychrophilum (CSF259-93B.17) has shown potential as a vaccine
for prevention of bacterial coldwater disease (BCWD) in rainbow trout, Oncorhynchus mykiss (Walbaum).
Because BCWD outbreaks can result in high mortality in other salmonid species, specifically coho salmon,
Oncorhynchus kisutch (Walbaum), the live-attenuated strain was tested as...
We made stable and rapid-responding pH and pCO2 microelectrodes. The pH microelectrode has a ~100-μm-diameter half-sphere bulb tip of pH glass, and the pCO2 sensor has a 200–300-μm-diameter silicone-membrane covered tip. Because the pH microelectrodes have electrical resistances that arc > 1O[to the tenth] ohms, all electrical connections are kept...
Over the past decade, regional ocean observing systems have been established along nearly the entirety of the U.S. coastlines, forming a major component of the national Integrated Ocean Observing System (100S). Observations from these systems provide information to support decision making by governmental agencies and commercial enterprises, such as shipping...
Background: Latino sexual minority men (SMM) may be a group disproportionately at risk for substance use than heterosexual Latino men and non-Latino SMM. As religiosity may be a culturally relevant factor, the current study aimed to explore the association of three subcomponents of religiosity: organizational religious activity (ORA; i.e., public...
Background: Vesiviruses in the family Caliciviridae infect a broad range of animal hosts including mammals, birds, fish, amphibians and reptiles. The vesivirus Cro1 strains were isolated from diseased snakes in the San Diego zoo in 1978 and reported as the first caliciviruses found in reptiles. The goal of this study...
To facilitate the selection of drill sites for Leg 138, a site survey
program was conducted on board the Scripps Institution of
Oceanography's research vessel Thomas Washington (Cruise Venture
1). During this cruise, which departed San Diego on 30 August 1989
and arrived in Manzanillo, Mexico, on 4 October 1989,...
Patterns of seasonal abundance of harbor seals at Netarts and Tillamook Bays, Oregon, were documented by recording numbers of seals hauling out on tidally exposed sand flats in both bays. Harbor seal abundance at Tillamook Bay peaked during pupping (May-June) and molting (August) periods, while peak abundance at Netarts Bay...
The interactive impact of overstory canopy closure, understory brush control, and simulated white-tailed deer (Odocoileus virginianus Zimmermann) herbivory (i.e., clipping) on growth and survival of underplanted white pine (Pinus strobus L.) seedlings was examined. Clipping was conducted in April 1996 and 1997 at three intensities (control, 0% previous year’s growth...
The 3-PGS (physiological principles for predicting growth using satellite data) model generates monthly estimates of transpiration, photosynthesis, and net primary production (NPP), the latter derived as a fixed proportion (0.47) of gross photosynthesis. To assess the reliability of a simplified process model (3-PGS) to predict the productive capacity of coniferous...
The appearance of personal computers in the mid-1980s transformed the conduct of oceanographic research in ways that are now familiar as well as in ways that are now only beginning to be perceived and understood. The first Macintosh computers and IBM personal computers (PCs) were marketed primarily to the technical...
Observations of Earth’s magnetic field extending back to 3.45 billion years ago indicate that generation by a core dynamo must be sustained over most of Earth’s history. However, recent estimates of thermal and electrical conductivity of liquid iron at core conditions from mineral physics experiments indicate that adiabatic heat flux...
Observations of vertical temperature microstructure at ocean station P during the mixed layer experiment (Mile) indicate that the shape of the high-frequency temperature gradient spectrum depends on the relative strengths of turbulence and stratification. For low Cox number ((dT/dz)²)/ (dT/dz)²• the linear range of the Batchelor spectrum is not well...
In a companion paper (Egbert et al., this issue) we describe the estimation of very long period (0.16 < T < 91 days) magnetotelluric (MT) impedances from 11 years of data collected at the Tucson geomagnetic observatory. Here we discuss the implications of these data for mantle conductivity. Using minimum...
Sequences of coastal zone color scanner (CZCS) images from the offshore region adjacent to Vancouver Island, Canada, have been analyzed to estimate the time rate of decorrelation of surface phytoplankton chlorophyll pigment patterns. In these high-latitude, high-pigment areas, CZCS-derived pigment estimates were lower than those obtained from ship samples by...
The phylogeny of ground beetles of supertribe Trechitae is inferred using DNA sequences of genes that code for 28S ribosomal RNA, 18S ribosomal RNA, and wingless. Within the outgroups, austral psydrines are inferred to be monophyletic, and separate from the three genera of true Psydrina (Psydrus, Nomius, Laccocenus); the austral...
We examined terrestrial amphibians in managed headwater forest stands in western Oregon from 1998 to 2009. We assessed: (1) temporal and spatial patterns of species capture rates, and movement patterns with distance from streams and forest management treatments of alternative riparian buffer widths and upland thinning; (2) species survival and...
In situ observations of tidally driven turbulence were obtained in a small channel that transects the crest of the Mendocino Ridge, a site of mixed (diurnal and semidiurnal) tides. Diurnal tides are subinertial at this latitude, and once per day a trapped tide leads to large flows through the channel...
The Mars Science Laboratory mission aims to land a car-sized rover on Mars’ surface and operate it for at least one Mars year in order to assess whether its field area was ever capable of supporting microbial life. Here we describe the approach used to identify, characterize, and assess environmental...