Headwater streams comprise nearly 90% of the total length of perennial channels in global catchments. They mineralize organic carbon entering from terrestrial systems, evade terrestrial carbon dioxide (CO₂ ), and generate and remove carbon through in-stream primary production and respiration. Despite their importance, headwater streams are often neglected in global...
Rising atmospheric [CO₂], cₐ, is expected to affect stomatal regulation of leaf gas-exchange of woody plants, thus influencing energy fluxes as well as carbon (C), water, and nutrient cycling of forests. Researchers have proposed various strategies for stomatal regulation of leaf gas-exchange that include maintaining a constant leaf internal [CO₂],...
The northern spotted owl (Strix occidentalis caurina) is one of the most intensively studied raptors in the world; however, little is known about the impacts of wildfire on the subspecies and how they use recently burned areas. Three large-scale wildfires in southwest Oregon provided an opportunity to investigate the short-term...
The site-specific incorporation of non-canonical amino acids (ncAAs) into proteins is an important tool for understanding biological function. Traditionally, each new ncAA targeted requires a resource-consuming process of generating new ncAA aminoacyl tRNA synthetase/tRNACUA pairs. However, the discovery that some tRNA synthetases are “permissive,” in that they can incorporate multiple...
In some bacteria, cysteine is converted to cysteine sulfinic acid by cysteine dioxygenases (CDO) that are only ∼15–30% identical in sequence to mammalian CDOs. Among bacterial proteins having this range of sequence similarity to mammalian CDO are some that conserve an active site Arg residue (“Arg-type” enzymes) and some having...
Ideal values of bond angles and lengths used as external restraints are crucial for the successful
refinement of protein crystal structures at all but the highest of resolutions. The restraints in
common usage today have been designed based on the assumption that each type of bond or
angle has a...
This study tested multiple hydrologic mechanisms to explain snowpack dynamics in extreme rain-on-snow floods, which occur widely in the temperate and polar regions. We examined 26, 10 day large storm events over the period 1992–2012 in the H.J. Andrews Experimental Forest in western Oregon, using statistical analyses (regression, ANOVA, and...
Diagnostic carbon cycle models produce estimates of net ecosystem production (NEP, the balance of net primary production
and heterotrophic respiration) by integrating information from (i) satellite-based observations of land surface
vegetation characteristics; (ii) distributed meteorological data; and (iii) eddy covariance flux tower observations of
net ecosystem exchange (NEE) (used in...
Rivers display temporal dependence in suspended sediment–water discharge relationships. Although most work has focused on multi-decadal trends, river sediment behavior often displays sub-decadal scale fluctuations that have received little attention. The objectives of this study were to identify inter-annual to decadal scale fluctuations in the suspended sediment–discharge relationship of a...
The ability of flavoenzymes to reduce dioxygen varies greatly and is controlled by the protein environment that can cause either a rapid (oxidases) or sluggish (dehydrogenases) reaction. Previously, a “gatekeeper” amino acid residue was identified that controls the reactivity to dioxygen in proteins from the vanillyl alcohol oxidase superfamily of...