Index Catalog // ScholarsArchive@OSU

AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture

Creator:: Harper, Lisa, Campbell, Jacqueline, Cannon, Steve, Carson, James, Condon, Bradford, Cooper, Laurel, Dunn, Nathan, Elsik, Christine G., Farmer, Andrew, Ficklin, Stephen P., Grant, David, Grau, Emily, Cannon, Ethalinda K. S., Herndon, Nic, Hu, Zhi-Liang, Humann, Jodi, Jaiswal, Pankaj, Jonquet, Clement, Laporte, Marie-Angelique, Larmande, Pierre, Lazo, Gerard, McCarthy, Fiona, Menda, Naama, Jung, Sook, Mungall, Christopher J., Munoz-Torres, Monica C., Naithani, Sushma, Nelson, Rex, Nesdill, Daureen, Park, Carissa, Reecy, James, Reiser, Leonore, Sanderson, Lacey-Anne, Sen, Taner Z., Poelchau, Monica, Staton, Margaret, Subramaniam, Sabarinath, Tello-Ruiz, Marcela Karey, Unda, Victor, Unni, Deepak, Wang, Liya, Ware, Doreen, Wegrzyn, Jill, Williams, Jason, Woodhouse, Margaret, Walls, Ramona, Yu, Jing, Main, Doreen, Andorf, Carson, Arnaud, Elizabeth, Berardini, Tanya Z., and Birkett, Clayton
Abstract:: The future of agricultural research depends on data. The sheer volume of agricultural biological data being produced today makes excellent data management essential. Governmental agencies, publishers and science funders require datamanagement plans for publicly funded research. Furthermore, the value of data increases exponentially when they are properly stored, described, integrated...
Resource Type:: Article
Full Text:: all outcomes of publicly funded research can and should contribute to such a system. It is simply too

Global solutions to regional problems : collecting global expertise to address the problem of harmful cyanobacterial blooms. A Lake Erie case study

Creator:: Bullerjahn, George S., McKay, Robert M., Davis, Timothy W., Baker, David B., Boyer, Gregory L., D’Anglada, Lesley V., Doucette, Gregory J., Ho, Jeff C., Irwin, Elena G., Kling, Catherine L., Kudela, Raphael M., Kurmayer, Rainer, Michalak, Anna M., Ortiz, Joseph D., Otten, Timothy G., Paerl, Hans W., Qin, Boqiang, Sohngen, Brent L., Stumpf, Richard P., Visser, Petra M., and Wilhelm, Steven W.
Abstract:: In early August 2014, the municipality of Toledo, OH (USA) issued a ‘do not drink’ advisory on their water supply directly affecting over 400,000 residential customers and hundreds of businesses (Wilson, 2014). This order was attributable to levels of microcystin, a potent liver toxin, which rose to 2.5 μg L⁻¹...
Resource Type:: Article
Full Text:: algal bloom) in the western basin of Lake Erie that was constrained by prevailing winds to the region

Host stage preference, efficacy and fecundity of parasitoids attacking Drosophila suzukii in newly invaded areas

Creator:: Stacconi, M. Valerio Rossi, Buffington, Matt, Daane, Kent M., Dalton, Daniel T., Grassi, Alberto, Kaçar, Gülay, Miller, Betsey, Miller, Jeffrey C., Baser, Nuray, Ioriatti, Claudio, Walton, Vaughn M., Wiman, Nik G., Wang, Xingeng, and Anfora, Gianfranco
Abstract:: Drosophila suzukii (Matsumura) (Diptera: Drosophilidae) causes severe damage to certain fruit crops in both North America and Europe. This may be due, in part, to the absence of specialized natural enemies that suppress population outbreaks. We performed a series of experiments under controlled laboratory conditions in tandem with a field...
Resource Type:: Article
Full Text:: Oregon, U.S.A. was provided from the USDA-NIFA award # 2010-51181-21167 and in Italy was partly funded by

Sequencing and De Novo Transcriptome Assembly of Brachypodium sylvaticum (Poaceae)

Creator:: Fox, Samuel E., Preece, Justin, Kimbrel, Jeffrey A., Marchini, Gina L., Sage, Abigail, Youens-Clark, Ken, Cruzan, Mitchell B., and Jaiswal, Pankaj
Abstract:: PREMISE OF THE STUDY: We report the de novo assembly and characterization of the transcriptomes of Brachypodium sylvaticum (slender false-brome) accessions from native populations of Spain and Greece, and an invasive population west of Corvallis, Oregon, USA. METHODS AND RESULTS: More than 350 million sequence reads from the mRNA libraries...
Resource Type:: Article
Full Text:: laboratory startup funds provided to P.J. 6 Author for correspondence: jaiswalp@science.oregonstate.edu

Impacts of Coastal Acidification on the Pacific Northwest Shellfish Industry and Adaptation Strategies Implemented in Response

Creator:: Barton, Alan, Waldbusser, George G., Feely, Richard A., Weisberg, Stephen B., Newton, Jan A., Hales, Burke, Cudd, Sue, Eudeline, Benoit, Langdon, Chris J., Jefferds, Ian, King, Teri, Suhrbier, Andy, and McLaughlin, Karen
Abstract:: In 2007, the US west coast shellfish industry began to feel the effects of unprecedented levels of larval mortality in commercial hatcheries producing the Pacific oyster Crassostrea gigas. Subsequently, researchers at Whiskey Creek Shellfish Hatchery, working with academic and government scientists, showed a high correlation between aragonite saturation state (Ω[subscript]arag)...
Resource Type:: Article
Full Text:: provided information on episodic exposures relating to the diur- nal and tidal changes encountered by

Integrated Omics Analysis of Pathogenic Host Responses during Pandemic H1N1 Influenza Virus Infection: The Crucial Role of Lipid Metabolism

Creator:: Tisoncik-Go, Jennifer, Gasper, David J., Kyle, Jennifer E., Eisfeld, Amie J., Selinger, Christian, Hatta, Masato, Morrison, Juliet, Korth, Marcus J., Zink, Erika M., Kim, Young-Mo, Schepmoes, Athena A., Nicora, Carrie D., Purvine, Samuel O., Weitz, Karl K., Peng, Xinxia, Green, Richard R., Tilton, Susan C., Webb-Robertson, Bobbie-Jo, Waters, Katrina M., Metz, Thomas O., Smith, Richard D., Kawaoka, Yoshihiro, Suresh, M., Josset, Laurence, and Katze, Michael G.
Abstract:: Pandemic influenza viruses modulate proinflammatory responses that can lead to immunopathogenesis. We present an extensive and systematic profiling of lipids, metabolites, and proteins in respiratory compartments of ferrets infected with either 1918 or 2009 human pandemic H1N1 influenza viruses. Integrative analysis of high-throughput omics data with virologic and histopathologic data...
Resource Type:: Article
Full Text:: collected to analyze lipids by LC-MS/ MS and metabolites by GC-MS. We identified 488 unique lipids in the

Nitrogen fixation in the Gulf of California and the Eastern Tropical North Pacific

Creator:: White, Angelicque E., Foster, Rachel A., Benitez-Nelson, Claudia R., Masqué, Pere, Verdeny, Elisabet, Popp, Brian N., Arthur, Karen E., and Prahl, Fredrick G.
Abstract:: Di-nitrogen (N₂) fixation plays a well-recognized role in the enhancement of primary production and arguably particle export in oligotrophic regions of the subtropical and tropical oceans. However, recent evidence suggests that N₂ fixation may also be significant in regions of the surface ocean proximate to or overlying zones of intense...
Resource Type:: Article
Full Text:: Catalunya (PM). Sample processing by RAF was supplemented with funds provided by the Center for Microbial

ScholarsArchive@OSU

AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture

Global solutions to regional problems : collecting global expertise to address the problem of harmful cyanobacterial blooms. A Lake Erie case study

Host stage preference, efficacy and fecundity of parasitoids attacking Drosophila suzukii in newly invaded areas

Sequencing and De Novo Transcriptome Assembly of Brachypodium sylvaticum (Poaceae)

Impacts of Coastal Acidification on the Pacific Northwest Shellfish Industry and Adaptation Strategies Implemented in Response

Integrated Omics Analysis of Pathogenic Host Responses during Pandemic H1N1 Influenza Virus Infection: The Crucial Role of Lipid Metabolism

Nitrogen fixation in the Gulf of California and the Eastern Tropical North Pacific

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