Index Catalog // ScholarsArchive@OSU

A comparison of selected parametric and non-paramentric imputation methods for estimating forest biomass and basal area

Creator:: Gagliasso, Donald, Hummel, Susan, and Temesgen, Hailemariam
Abstract:: Various methods have been used to estimate the amount of above ground forest biomass across landscapes and to create biomass maps for specific stands or pixels across ownership or project areas. Without an accurate estimation method, land managers might end up with incorrect biomass estimate maps, which could lead them...
Resource Type:: Article
Full Text:: Imputation Methods for Estimating Forest Biomass and Basal Area Donald Gagliasso1, Susan Hummel2

Gramene: Development and Integration of Trait and Gene Ontologies for Rice

Creator:: Jaiswal, Pankaj, Ware, Doreen, Ni, Junjian, Chang, Kuan, Zhao, Wei, Schmidt, Steven, Pan, Xiaokang, Clark, Kenneth, Teytelman, Leonid, Cartinhour, Samuel, Stein, Lincoln, and McCouch, Susan
Abstract:: Gramene (http://www.gramene.org/) is a comparative genome database for cereal crops and a community resource for rice. We are populating and curating Gramene with annotated rice (Oryza sativa) genomic sequence data and associated biological information including molecular markers, mutants, phenotypes, polymorphisms and Quantitative Trait Loci (QTL). In order to support queries...
Resource Type:: Article
Full Text:: ontologies for rice Pankaj Jaiswal1, Doreen Ware3, Junjian Ni1, Kuan Chang1, Wei Zhao3, Steven Schmidt3

The Soil Moisture Active Passive Marena, Oklahoma, In Situ Sensor Testbed (SMAP-MOISST): Testbed Design and Evaluation of In Situ Sensors

Creator:: Cosh, Michael H., Ochsner, Tyson E., McKee, Lynn, Dong, Jingnuo, Basara, Jeffrey B., Evett, Steven R., Hatch, Christine E., Small, Eric E., Steele-Dunne, Susan C., Zreda, Marek, and Sayde, Chadi
Abstract:: n situ soil moisture monitoring networks are critical to the development of soil moisture remote sensing missions as well as agricultural and environmental management, weather forecasting, and many other endeavors. These in situ networks utilize a variety of sensors and installation practices, which confounds the development of a unified reference...
Resource Type:: Article
Full Text:: , Jeffrey B. Basara, Steven R. Evett, Christine E. Hatch, Eric E. Small, Susan C. Steele-Dunne, Marek

Whole-Plant Growth Stage Ontology for Angiosperms and Its Application in Plant Biology

Creator:: Pujar, Anuradha, Jaiswal, Pankaj, Kellogg, Elizabeth A., Ilic, Katica, Vincent, Leszek, Avraham, Shulamit, Stevens, Peter, Zapata, Felipe, Reiser, Leonore, Rhee, Seung Y., Sachs, Martin M., Schaeffer, Mary, Stein, Lincoln, Ware, Doreen, and McCouch, Susan
Abstract:: Plant growth stages are identified as distinct morphological landmarks in a continuous developmental process. The terms describing these developmental stages record the morphological appearance of the plant at a specific point in its life cycle. The widely differing morphology of plant species consequently gave rise to heterogeneous vocabularies describing growth...
Resource Type:: Article
Full Text:: Ware, and Susan McCouch* Department of Plant Breeding, Cornell University, Ithaca, New York 14853 (A.P

Plant Ontology (PO): a controlled vocabulary of plant structures and growth stages

Creator:: Jaiswal, Pankaj, Avraham, Shulamit, Ilic, Katica, Kellog, Elizabeth, A., McCouch, Susan, Pujar, Anuradha, Reiser, Leonore, Rhee, Seung Y., Sachs, Martin M., Schaeffer, Mary, Stein, Lincoln, Stevens, Peter, Vincent, Leszek, Ware, Doreen, and Zapata, Felipe
Abstract:: The Plant Ontology Consortium (POC) (www.plantontology.org) is a collaborative effort among several plant databases and experts in plant systematics, botany and genomics. A primary goal of the POC is to develop simple yet robust and extensible controlled vocabularies that accurately reflect the biology of plant structures and developmental stages. These...
Resource Type:: Article
Full Text:: #, Susan McCouch1, Anuradha Pujar1#, Leonore Reiser3, Seung Y Rhee3, Martin M. Sachs5,6, Mary Schaeffer6,7

The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations

Creator:: Avraham, Shulamit, Tung, Chih-Wei, Ilic, Katica, Jaiswal, Pankaj, Kellogg, Elizabeth A., McCouch, Susan, Pujar, Anuradha, Reiser, Leonore, Rhee, Seung Y., Sachs, Martin M., Schaeffer, Mary, Stein, Lincoln, Stevens, Peter, Vincent, Leszek, Zapata, Felipe, and Ware, Doreen
Abstract:: The Plant Ontology Consortium (POC, http://www.plantontology.org) is a collaborative effort among model plant genome databases and plant researchers that aims to create, maintain and facilitate the use of a controlled vocabulary (ontology) for plants. The ontology allows users to ascribe attributes of plant structure (anatomy and morphology) and developmental stages...
Resource Type:: Article

The Plant Structure Ontology, a Unified Vocabulary of Anatomy and Morphology of a Flowering Plant

Creator:: Ilic, Katica, Kellogg, Elizabeth A., Jaiswal, Pankaj, Zapata, Felipe, Stevens, Peter F., Vincent, Leszek P., Avraham, Shulamit, Reiser, Leonore, Pujar, Anuradha, Sachs, Martin M., Whitman, Noah T., McCouch, Susan R., Schaeffer, Mary L., Ware, Doreen H., Stein, Lincoln D., and Rhee, Seung Y.
Abstract:: Formal description of plant phenotypes and standardized annotation of gene expression and protein localization data require uniform terminology that accurately describes plant anatomy and morphology. This facilitates cross species comparative studies and quantitative comparison of phenotypes and expression patterns. A major drawback is variable terminology that is used to describe...
Resource Type:: Article

Gramene: a bird's eye view of cereal genomes

Creator:: Jaiswal, Pankaj, Ni, Junjian, Yap, Immanuel, Ware, Doreen, Spooner, William, Youens-Clark, Ken, Canaran, Payan, Fogleman, Molly, Hebbard, Claire, Ren, Liya, Liang, Chengzhi, Zhao, Wei, Ratnapu, Kiran, Faga, Benjamin, Avraham, Shuly, Schmidt, Steven, Casstevens, Terry M., Buckler, Edward S., Stein, Lincoln, and McCouch, Susan
Abstract:: Rice, maize, sorghum, wheat, barley and the other major crop grasses from the family Poaceae (Gramineae) are mankind’s most important source of calories and contribute tens of billions of dollars annually to the world economy (FAO 1999, http://www.fao.org; USDA 1997, http://www.usda.gov). Continued improvement of Poaceae crops is necessary in order...
Resource Type:: Article
Full Text:: , Kiran Ratnapu1, Benjamin Faga1, Payan Canaran1, Molly Fogleman, Claire Hebbard, Shuly Avraham1, Steven

A Broadly Implementable Research Course in Phage Discovery and Genomics for First-Year Undergraduate Students

Creator:: Jordan, Tuajuanda C., Burnett, Sandra H., Carson, Susan, Caruso, Steven M., Clase, Kari, DeJong, Randall J., Dennehy, John J., Denver, Dee R., Dunbar, David, Elgin, Sarah C. R., Findley, Ann M., Gissendanner, Chris R., Golebiewska, Urszula P., Guild, Nancy, Hartzog, Grant A., Grillo, Wendy H., Hollowell, Gail P., Hughes, Lee E., Johnson, Allison, King, Rodney A., Lewis, Lynn O., Li, Wei, Rosenzweig, Frank, Rubin, Michael R., Saha, Margaret S., Sandoz, James, Shaffer, Christopher D., Taylor, Barbara, Temple, Louise, Vazquez, Edwin, Ware, Vassie C., Barker, Lucia P., Bradley, Kevin W., Jacobs-Sera, Deborah, Pope, Welkin H., Russell, Daniel A., Cresawn, Steven G., Lopatto, David, Bailey, Cheryl P., and Hatfull, Graham F.
Abstract:: Engaging large numbers of undergraduates in authentic scientific discovery is desirable but difficult to achieve. We have developed a general model in which faculty and teaching assistants from diverse academic institutions are trained to teach a research course for first-year undergraduate students focused on bacteriophage discovery and genomics. The course...
Resource Type:: Article

Wildfire risk as a socioecological pathology

Creator:: Fischer, A. Paige, Spies, Thomas A., Steelman, Toddi A., Moseley, Cassandra, Johnson, Bart R., Bailey, John D., Ager, Alan A., Bourgeron, Patrick, Charnley, Susan, Collins, Brandon M., Kline, Jeffrey D., Leahy, Jessica E., Littell, Jeremy S., Millington, James D. A., Nielsen-Pincus, Max, Olsen, Christine S., Paveglio, Travis B., Roos, Christopher I., Steen-Adams, Michelle M., Stevens, Forrest R., Vukomanovic, Jelena., White, Eric M., and Bowman, David M. J. S.
Abstract:: Wildfire risk in temperate forests has become a nearly intractable problem that can be characterized as a socioecological “pathology”: that is, a set of complex and problematic interactions among social and ecological systems across multiple spatial and temporal scales. Assessments of wildfire risk could benefit from recognizing and accounting for...
Resource Type:: Article
Full Text:: Bailey5, Alan A Ager6, Patrick Bourgeron7, Susan Charnley8, Brandon M Collins9, Jeffrey D Kline2, Jessica

ScholarsArchive@OSU

A comparison of selected parametric and non-paramentric imputation methods for estimating forest biomass and basal area

Gramene: Development and Integration of Trait and Gene Ontologies for Rice

The Soil Moisture Active Passive Marena, Oklahoma, In Situ Sensor Testbed (SMAP-MOISST): Testbed Design and Evaluation of In Situ Sensors

Whole-Plant Growth Stage Ontology for Angiosperms and Its Application in Plant Biology

Plant Ontology (PO): a controlled vocabulary of plant structures and growth stages

The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations

The Plant Structure Ontology, a Unified Vocabulary of Anatomy and Morphology of a Flowering Plant

Gramene: a bird's eye view of cereal genomes

A Broadly Implementable Research Course in Phage Discovery and Genomics for First-Year Undergraduate Students

Wildfire risk as a socioecological pathology

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