Index Catalog // ScholarsArchive@OSU

Big fishery, big data, and little crabs: Using genomic methods to examine the seasonal recruitment patterns of early life stage Dungeness crab (Cancer magister) in the California Current Ecosystem

Creator:: Lee, Elizabeth M. J. and O'Malley, Kathleen G.
Abstract:: The California Current Ecosystem (CCE) is a dynamic marine ecosystem from which many socioeconomically important fisheries species are harvested. Here, a genotyping- by-sequencing (GBS) approach was used to examine genomic variation in an early life stage (megalopae) of the Dungeness crab (Cancer magister), which constitutes the most valuable single-species commercial...
Resource Type:: Article
Full Text:: elizabethmjlee@gmail.com †ORCID: Elizabeth M. J. Lee orcid.org/0000-0003-3412-1591 Kathleen G. O’Malley

A latitudinal cline in the Chinook salmon (Oncorhynchus tshawytscha) Clock gene: evidence for selection on PolyQ length variants

Creator:: O'Malley, Kathleen G. and Banks, Michael A.
Abstract:: A critical seasonal event for anadromous Chinook salmon (Oncorhynchus tshawytscha) is the time at which adults migrate from the ocean to breed in freshwater. We investigated whether allelic variation at the circadian rhythm genes, OtsClock1a and OtsClock1b, underlies genetic control of migration timing among 42 populations in North America. We...
Resource Type:: Article
Full Text:: ) Clock gene: evidence for selection on PolyQ length variants Kathleen G. O’Malley* and Michael A. Banks

Fine-scale spatial and temporal genomic variation among Dungeness crab Cancer magister larval recruits in the California Current Ecosystem

Creator:: Lee, Elizabeth M. J. and O'Malley, Kathleen G.
Abstract:: Dynamic marine environments can shape complex spatial and temporal patterns in the population connectivity of marine species, and this is often exemplified in species with long larval phases. Here, we used a genotyping-by-sequencing (GBS) approach to examine fine-scale spatial and temporal genomic variation among Dungeness crab Cancer magister larval recruits...
Resource Type:: Article
Full Text:: *, Kathleen G. O’Malley State Fisheries Genomics Lab, Coastal Oregon Marine Experiment Station, Department of

Comparing genetic connectivity among Dungeness crab (Cancer magister) inhabiting Puget Sound and coastal Washington

Creator:: Jackson, Tyler M. and O’Malley, Kathleen G.
Abstract:: Understanding connectivity of marine organisms is necessary for determining the appropriate scale of conservation and management strategies. For species that inhabit both the coastal ocean and partially enclosed water bodies (i.e., estuaries or fjords), this information is even more critical since estuaries and fjords are often characterized by hydrological complexities...
Resource Type:: Article

Big fishery, big data, and little crabs : using genomic methods to examine the seasonal recruitment patterns of early life stage dungeness crab (Cancer magister) in the California Current ecosystem

Creator:: Lee, Elizabeth M. J. and O'Malley, Kathleen
Abstract:: The California Current Ecosystem (CCE) is a dynamic marine ecosystem from which many socioeconomically important fisheries species are harvested. Here, a genotyping-by-sequencing (GBS) approach was used to examine genomic variation in an early life stage (megalopae) of the Dungeness crab (Cancer magister), which constitutes the most valuable single-species commercial fishery...
Resource Type:: Article
Full Text:: Kathleen G. O’Malley orcid.org/0000-0003-0995-599X Specialty section: This article was submitted to

Evidence for interannual variation in genetic structure of Dungeness crab (Cancer magister) along the California Current System

Creator:: Jackson, Tyler M., Roegner, G. Curtis, and O'Malley, Kathleen G.
Abstract:: Using a combination of population‐ and individual‐based analytical approaches, we provide a comprehensive examination of genetic connectivity of Dungeness crab (Cancer magister) along ~1,200 km of the California Current System (CCS). We sampled individuals at 33 sites in 2012 to establish a baseline of genetic diversity and hierarchal population genetic...
Resource Type:: Article

Timing of Population Fragmentation in a Vulnerable Minnow, the Umpqua Chub, and the Role of Nonnative Predators

Creator:: O’Malley, Kathleen G., Markle, Douglas F., and Ardren, William R.
Abstract:: We examined the distribution of Umpqua Chub Oregonichthys kalawatseti, an endemic, vulnerable minnow in western Oregon, and whether six ecological populations (based on distribution patterns) had sufficient genetic cohesion to be considered evolutionary populations. We also evaluated the influence of Holocene geological events and recent nonnative predator introductions on the...
Resource Type:: Article
Full Text:: Fragmentation in a Vulnerable Minnow, the Umpqua Chub, and the Role of Nonnative Predators Kathleen G. O’Malley

Characterizing neutral and adaptive genomic differentiation in a changing climate: The most northerly freshwater fish as a model

Creator:: O'Malley, Kathleen G., Vaux, Felix, and Black, Andrew N.
Abstract:: Arctic freshwater ecosystems have been profoundly affected by climate change. Given that the Arctic charr (Salvelinus alpinus) is often the only fish species inhabiting these ecosystems, it represents a valuable model for studying the impacts of climate change on species life‐history diversity and adaptability. Using a genotyping‐by‐se‐ quencing approach, we...
Resource Type:: Article
Full Text:: model Kathleen G. O’Malley | Felix Vaux | Andrew N. Black This is an open access article under the

Adaptive genetic markers discriminate migratory runs of Chinook salmon (Oncorhynchus tshawytscha) amid continued gene flow

Creator:: O'Malley, Kathleen G., Jacobson, Dave P., Kurth, Ryon, Dill, Allen J., and Banks, Michael A.
Abstract:: Neutral genetic markers are routinely used to define distinct units within species that warrant discrete management. Human-induced changes to gene flow however may reduce the power of such an approach. We tested the efficiency of adaptive versus neutral genetic markers in differentiating temporally divergent migratory runs of Chinook salmon (Oncorhynchus...
Resource Type:: Article
Full Text:: gene flow Kathleen G. O’Malley,1 Dave P. Jacobson,1 Ryon Kurth,2 Allen J. Dill3 and Michael A. Banks1

Sex identification PCR–RFLP assay tested in eight species of Sebastes rockfish

Creator:: Vaux, Felix, Aycock, Hannah M., Bohn, Sandra, Rasmuson, Leif K., and O'Malley, Kathleen G.
Abstract:: The phenotypic identification of sex in Sebastes rockfish is difficult and often impractical from a management perspective, and the genetic basis of sex determination in the genus is currently uncertain. We tested a previously developed sex identifi- cation polymerase chain reaction restriction fragment length polymorphism (PCR–RFLP) assay in eight species...
Resource Type:: Article
Full Text:: K. Rasmuson3 · Kathleen G. O’Malley1 Received: 11 December 2019 / Accepted: 22 April 2020

ScholarsArchive@OSU

Big fishery, big data, and little crabs: Using genomic methods to examine the seasonal recruitment patterns of early life stage Dungeness crab (Cancer magister) in the California Current Ecosystem

A latitudinal cline in the Chinook salmon (Oncorhynchus tshawytscha) Clock gene: evidence for selection on PolyQ length variants

Fine-scale spatial and temporal genomic variation among Dungeness crab Cancer magister larval recruits in the California Current Ecosystem

Comparing genetic connectivity among Dungeness crab (Cancer magister) inhabiting Puget Sound and coastal Washington

Big fishery, big data, and little crabs : using genomic methods to examine the seasonal recruitment patterns of early life stage dungeness crab (Cancer magister) in the California Current ecosystem

Evidence for interannual variation in genetic structure of Dungeness crab (Cancer magister) along the California Current System

Timing of Population Fragmentation in a Vulnerable Minnow, the Umpqua Chub, and the Role of Nonnative Predators

Characterizing neutral and adaptive genomic differentiation in a changing climate: The most northerly freshwater fish as a model

Adaptive genetic markers discriminate migratory runs of Chinook salmon (Oncorhynchus tshawytscha) amid continued gene flow

Sex identification PCR–RFLP assay tested in eight species of Sebastes rockfish

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