Index Catalog // ScholarsArchive@OSU

Introduction to special section on Recent Advances in the Study of Optical Variability in the Near-Surface and Upper Ocean

Creator:: Dickey, T., Banner, M. L., Bhandari, P., Boyd, Timothy John, 1958-2013, Carvalho, L., Chang, G., Chao, Y., Czerski, H., Darecki, M., Dong, C., Farmer, D., Freeman, S., Gemmrich, J., Gernez, P., Hall-Patch, N., Holt, B., Jiang, S., Jones, C., Kattawar, G., LeBel, D., Lenain, L., Lewis, M., Liu, Y., Logan, L., Manov, D., Melville, W. K., Moline, M. A., Morison, R., Nencioli, F., Pegau, W. S., Reineman, B., Robbins, I., Roettgers, R., Schultz, H., Shen, L., Shinki, M., Slivkoff, M., Sokolski, M., Spada, F., Statom, N., Stramski, D., Sutherland, P., Twardowski, M., Vagle, S., Van Dommelen, R., Voss, K., Washburn, L., Wei, J., Wijesekera, H., Wurl, O., Yang, D., Yildiz, S., You, Y., Yue, D. K. P., Zaneveld, R., and Zappa, C. J.
Abstract:: Optical variability occurs in the near-surface and upper ocean on very short time and space scales (e.g., milliseconds and millimeters and less) as well as greater scales. This variability is caused by solar, meteorological, and other physical forcing as well as biological and chemical processes that affect optical properties and...
Resource Type:: Article
Full Text:: ,26 R. Röttgers,29 H. Schultz,30 L. Shen,31 M. Shinki,32 M. Slivkoff,33 M. Sokólski,11 F. Spada,8 N

Alternative Splicing in the Obligate Biotrophic Oomycete Pathogen Pseudoperonospora cubensis

Creator:: Burkhardt, Alyssa, Buchanan, Alex, Cumbie, Jason S., Savory, Elizabeth A., Chang, Jeff H., and Day, Brad
Abstract:: Pseudoperonospora cubensis is an obligate pathogen and causative agent of cucurbit downy mildew. To help advance our understanding of the pathogenicity of P. cubensis, we used RNA-Seq to improve the quality of its reference genome sequence. We also characterized the RNA-Seq dataset to inventory transcript isoforms and infer alternative splicing...
Resource Type:: Article
Full Text:: ; Pleiss et al. 2007; Savory et al. 2012b; Shen et al. 2011; Wilhelm et al. 2008). Eukaryotic genes are

Effects of hydrogen sulfide on storage quality, water mobility and cell wall metabolism of strawberry fruit

Creator:: Zhi, Huanhuan, Liu, Qiqi, and Dong, Yu
Abstract:: The effects of hydrogen sulfide (H2S) on storage quality, cellular water distribution, and cell wall metabolism of strawberry fruit after subjected to shelf or cold storage were investigated. Fruit were fumigated with a range of aqueous NaHS solution (0.4-3.2 mmol/L), then stored at 20 degrees C for 3 d or...
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Full Text:: -bound polysaccharides. On the other hand, Ben-Arie and Lavee[28] found that more low molecular-mass

Methylome reorganization during in vitro dedifferentiation and regeneration of Populus trichocarpa

Creator:: Vining, Kelly, Pomraning, Kyle R., Wilhelm, Larry J., Ma, Cathleen, Pellegrini, Matteo, Di, Yanming, Mockler, Todd C., Freitag, Michael, and Strauss, Steven H.
Abstract:: Background: Cytosine DNA methylation (5mC) is an epigenetic modification that is important to genome stability and regulation of gene expression. Perturbations of 5mC have been implicated as a cause of phenotypic variation among plants regenerated through in vitro culture systems. However, the pattern of change in 5mC and its functional...
Resource Type:: Article

A fluid-mechanics based classification scheme for surface transient storage in riverine environments: quantitatively separating surface from hyporheic transient storage

Creator:: Jackson, T. R., Haggerty, R., and Apte, Sourabh V.
Abstract:: Surface transient storage (STS) and hyporheic transient storage (HTS) have functional significance in stream ecology and hydrology. Currently, tracer techniques couple STS and HTS effects on stream nutrient cycling; however, STS resides in localized areas of the surface stream and HTS resides in the hyporheic zone. These contrasting environments result...
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Full Text:: transient storage (HTS) (Ben- cala and Walters, 1983; Boulton et al., 1998; Briggs et al., 2009). By

Gene expression associated with white syndromes in a reef building coral, Acropora hyacinthus

Creator:: Wright, Rachel M., Aglyamova, Galina V., Meyer, Eli, and Matz, Mikhail V.
Abstract:: Background: Corals are capable of launching diverse immune defenses at the site of direct contact with pathogens, but the molecular mechanisms of this activity and the colony-wide effects of such stressors remain poorly understood. Here we compared gene expression profiles in eight healthy Acropora hyacinthus colonies against eight colonies exhibiting...
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Full Text:: . Ben-Haim Y. Vibrio coralliilyticus sp. nov., a temperature-dependent pathogen of the coral Pocillopora

Water quality criteria for an acidifying ocean: Challenges and opportunities for improvement

Creator:: Weisberg, Stephen B., Bednaršek, Nina, Feely, Richard A., Chan, Francis, Boehm, Alexandria B., Sutula, Martha, Ruesink, Jennifer L., Hales, Burke, Largier, John L., and Newton, Jan A.
Abstract:: This is PMEL Contribution 4396. Acidification has sparked discussion about whether regulatory agencies should place coastal waters on the Clean Water Act 303(d) impaired water bodies list. Here we describe scientific challenges in assessing impairment with existing data, exploring use of both pH and biological criteria. Application of pH criteria...
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Full Text:: ; Ben Kheder et al., 2010). Typical summer water temperatures in Willapa Bay are at the low end of this

Effects of Environmental Factors and Nutrient Availability on the Biochemical Composition of Algae for Biofuels Production: A Review

Creator:: Juneja, Ankita, Ceballos, Ruben Michael, and Murthy, Ganti S.
Abstract:: Due to significant lipid and carbohydrate production as well as other useful properties such as high production of useful biomolecular substrates (e.g., lipids) and the ability to grow using non-potable water sources, algae are being explored as a potential high-yield feedstock for biofuels production. In both natural and engineered systems,...
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Seismoturbidite record as preserved at core sites at the Cascadia and Sumatra–Andaman subduction zones

Creator:: Patton, J. R., Goldfinger, C., Morey, A. E., Romsos, C., Black, B., Djadjadihardja, Y., and Udrekh
Abstract:: Turbidite deposition along slope and trench settings is evaluated for the Cascadia and Sumatra-Andaman subduction zones. Source proximity, basin effects, turbidity current flow path, temporal and spatial earthquake rupture, hydrodynamics, and topography all likely play roles in the deposition of the turbidites as evidenced by the vertical structure of the...
Resource Type:: Article

Wild bee diversity is enhanced by experimental removal of timber harvest residue within intensively managed conifer forest

Creator:: Rivers, James W., Mathis, Codey L., Moldenke, Andrew R., and Betts, Matthew G.
Abstract:: The use of timber harvest residue as an energy source is thought to have environmental benefits relative to food-based crops, yet the ecological impact of this practice remains largely unknown. We assessed whether the abundance and diversity of wild bees (Apoidea) were influenced by the removal of harvest residue and...
Resource Type:: Article
Full Text:: - shen, & Horn, 2016) and groups like saproxylic beetles (Kaila, Martikainen, & Punttila, 1997), some of

ScholarsArchive@OSU

Introduction to special section on Recent Advances in the Study of Optical Variability in the Near-Surface and Upper Ocean

Alternative Splicing in the Obligate Biotrophic Oomycete Pathogen Pseudoperonospora cubensis

Effects of hydrogen sulfide on storage quality, water mobility and cell wall metabolism of strawberry fruit

Methylome reorganization during in vitro dedifferentiation and regeneration of Populus trichocarpa

A fluid-mechanics based classification scheme for surface transient storage in riverine environments: quantitatively separating surface from hyporheic transient storage

Gene expression associated with white syndromes in a reef building coral, Acropora hyacinthus

Water quality criteria for an acidifying ocean: Challenges and opportunities for improvement

Effects of Environmental Factors and Nutrient Availability on the Biochemical Composition of Algae for Biofuels Production: A Review

Seismoturbidite record as preserved at core sites at the Cascadia and Sumatra–Andaman subduction zones

Wild bee diversity is enhanced by experimental removal of timber harvest residue within intensively managed conifer forest

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