Index Catalog // ScholarsArchive@OSU

Literature-Based Gene Curation and Proposed Genetic Nomenclature for Cryptococcus

Creator:: Inglis, Diane O., Skrzypek, Marek S., Liaw, Edward, Moktali, Venkatesh, Sherlock, Gavin, and Stajich, Jason E.
Abstract:: Cryptococcus, a major cause of disseminated infections in immunocompromised patients, kills over 600,000 people per year worldwide. Genes involved in the virulence of the meningitis-causing fungus are being characterized at an increasing rate, and to date, at least 648 Cryptococcus gene names have been published. However, these data are scattered...
Resource Type:: Article

Modeling non-Darcy flows in realistic pore-scale proppant geometries

Creator:: Trykozko, Anna, Peszynska, Malgorzata, and Dohnalik, Marek
Abstract:: The ability to evaluate the effective permeability of proppant packs is useful in predicting the efficiency of hydraulic fracture installations. In this paper we propose a computational approach combining microimaging data from X-ray computed microtomography, the simulations of flow at pore-scale, and an upscaling process which identifies the effective model...
Resource Type:: Article
Full Text:: geometries Anna Trykozko1, Malgorzata Peszynska2, and Marek Dohnalik3 1Interdisciplinary Centre for

A quantum phase transition in a quantum external field: Superposing two magnetic phases

Creator:: Rams, Marek M., Zwolak, Michael, and Damski, Bogdan
Abstract:: We study an Ising chain undergoing a quantum phase transition in a quantum magnetic field. Such a field can be emulated by coupling the chain to a central spin initially in a superposition state. We show that - by adiabatically driving such a system - one can prepare a quantum...
Resource Type:: Article
Full Text:: : Superposing two magnetic phases Marek M. Rams1,2,3, Michael Zwolak4 & Bogdan Damski1 1Los Alamos National

Population Structure of Pythium irregulare, P. ultimum, and P. sylvaticum in Forest Nursery Soils of Oregon and Washington

Creator:: Weiland, Jerry E., Garrido, Patricia, Kamvar, Zhian N., Espíndola, Andrés S., Marek, Stephen M., Grünwald, Niklaus J., and Garzón, Carla D.
Abstract:: Pythium species are important soilborne pathogens occurring in the forest nursery industry of the Pacific Northwest. However, little is known about their genetic diversity or population structure and it is suspected that isolates are moved among forest nurseries on seedling stock and shared field equipment. In order to address these...
Resource Type:: Article

The Gene Ontology in 2010: extensions and refinements

Creator:: Gene Ontology Consortium, Berardini, Tanya Z., Li, Donghui, Huala, Eva, Bridges, Susan, Burgess, Shane, McCarthy, Fiona, Carbon, Seth, Lewis, Suzanna E., Mungall, Christopher J., Abdulla, Amina, Wood, Valerie, Feltrin, Erika, Valle, Giorgio, Chisholm, Rex L., Fey, Petra, Gaudet, Pascale, Kibbe, Warren, Basu, Siddhartha, Bushmanova, Yulia, Eilbeck, Karen, Siegele, Deborah A., McIntosh, Brenley, Renfro, Daniel, Zweifel, Adrienne, Hu, James C., Harris, Midori A., Deegan, Jennifer I., Ireland, Amelia, Lomax, Jane, Jaiswal, Pankaj, Chibucos, Marcus, Gwinn-Giglio, Michelle, Wortman, Jennifer, Hannick, Linda, Madupu, Ramana, Botstein, David, Dolinski, Kara, Livstone, Michael S., Oughtred, Rose, Blake, Judith A., Bult, Carol, Diehl, Alexander D., Dolan, Mary, Drabkin, Harold, Eppig, Janan T., Hill, David P., Ni, Li, Ringwald, Martin, Sitnikov, Dmitry, Collmer, Candace, Torto-Alalibo, Trudy, Laulederkind, Stan, Shimoyama, Mary, Twigger, Simon, D'Eustachio, Peter, Matthews, Lisa, Balakrishnan, Rama, Binkley, Gail, Cherry, J. Michael, Christie, Karen R., Costanzo, Maria C., Engel, Stacia R., Fisk, Dianna G., Hirschman, Jodi E., Hitz, Benjamin C., Hong, Eurie L., Krieger, Cynthia J., Miyasato, Stuart R., Nash, Robert S., Park, Julie, Skrzypek, Marek S., Weng, Shuai, Wong, Edith D., Aslett, Martin, Chan, Juancarlos, Kishore, Ranjana, Sternberg, Paul, Van Auken, Kimberly, Khodiyar, Varsha K., Lovering, Ruth C., and Talmud, Philippa J.
Abstract:: The Gene Ontology (GO) Consortium (http://www.geneontology.org) (GOC) continues to develop, maintain and use a set of structured, controlled vocabularies for the annotation of genes, gene products and sequences. The GO ontologies are expanding both in content and in structure. Several new relationship types have been introduced and used, along with...
Resource Type:: Article
Full Text:: . Miyasato, Robert S. Nash, Julie Park, Marek S. Skrzypek, Shuai Weng, Edith D. Wong (SGD, Department of

State of the Art in Large-Scale Soil Moisture Monitoring

Creator:: Ochsner, Tyson E., Cosh, Michael H., Cuenca, Richard H., Dorigo, Wouter A., Draper, Clara S., Hagimoto, Yutaka, Kerr, Yann H., Larson, Kristine M., Njoku, Eni G., Small, Eric E., and Zreda, Marek
Abstract:: Soil moisture is an essential climate variable influencing land–atmosphere interactions, an essential hydrologic variable impacting rainfall–runoff processes, an essential ecological variable regulating net ecosystem exchange, and an essential agricultural variable constraining food security. Large-scale soil moisture monitoring has advanced in recent years, creating opportunities to transform scientific understanding of soil...
Resource Type:: Article
Full Text:: ., Dorigo, W. A., Draper, C. S., Hagimoto, Y., ... & Zreda, M. (2013). State of the art in large-scale soil

The Soil Moisture Active Passive Marena, Oklahoma, In Situ Sensor Testbed (SMAP-MOISST): Testbed Design and Evaluation of In Situ Sensors

Creator:: Cosh, Michael H., Ochsner, Tyson E., McKee, Lynn, Dong, Jingnuo, Basara, Jeffrey B., Evett, Steven R., Hatch, Christine E., Small, Eric E., Steele-Dunne, Susan C., Zreda, Marek, and Sayde, Chadi
Abstract:: n situ soil moisture monitoring networks are critical to the development of soil moisture remote sensing missions as well as agricultural and environmental management, weather forecasting, and many other endeavors. These in situ networks utilize a variety of sensors and installation practices, which confounds the development of a unified reference...
Resource Type:: Article
Full Text:: , Jeffrey B. Basara, Steven R. Evett, Christine E. Hatch, Eric E. Small, Susan C. Steele-Dunne, Marek

Thermal optimality of net ecosystem exchange of carbon dioxide and underlying mechanisms

Creator:: Niu, Shuli, Luo, Yiqi, Fei, Shenfeng, Yuan, Wenping, Schimel, David, Law, Beverly E., Ammann, Christof, Arain, M. Altaf, Arneth, Almut, Aubinet, Marc, Barr, Alan, Beringer, Jason, Bernhofer, Christian, Black, T. Andrew, Buchmann, Nina, Cescatti, Alessandro, Chen, Jiquan, Davis, Kenneth J., Dellwik, Ebba, Desai, Ankur R., Etzold, Sophia, Francois, Louis, Gianelle, Damiano, Gielen, Bert, Goldstein, Allen, Groenendijk, Margriet, Gu, Lianhong, Hanan, Niall, Helfter, Carole, Hirano, Takashi, Hollinger, David Y., Jones, Mike B., Kiely, Gerard, Kolb, Thomas E., Kutsch, Werner L., Lafleur, Peter, Lawrence, David M., Li, Linghao, Lindroth, Anders, Litvak, Marcy, Loustau, Denis, Lund, Magnus, Marek, Michal, Martin, Timothy A., Matteucci, Giorgio, Migliavacca, Mirco, Montagnani, Leonardo, Moors, Eddy, Munger, J. William, Noormets, Asko, Oechel, Walter, Olejnik, Janusz, Paw U, Kyaw Tha, Pilegaard, Kim, Rambal, Serge, Raschi, Antonio, Scott, Russell L., Seufert, Gunther, Spano, Donatella, Stoy, Paul, Sutton, Mark A., Varlagin, Andrej, Vesala, Timo, Weng, Ensheng, Wohlfahrt, Georg, Yang, Bai, Zhang, Zhongda, and Zhou, Xuhui
Abstract:: It is well established that individual organisms can acclimate and adapt to temperature to optimize their functioning. However, thermal optimization of ecosystems, as an assemblage of organisms, has not been examined at broad spatial and temporal scales. Here, we compiled data from 169 globally distributed sites of eddy covariance and...
Resource Type:: Article
Full Text:: Angert A, Biraud S, Bonfils C, Henning CC, Buermann W, Pinzon J, Tucker CJ, Fung I. 2005. Drier summers

Toward genome-enabled mycology

Creator:: Hibbett, David S., Stajich, Jason E., and Spatafora, Joseph W.
Abstract:: Genome-enabled mycology is a rapidly expanding field that is characterized by the pervasive use of genome-scale data and associated computational tools in all aspects of fungal biology. Genome-enabled mycology is integrative and often requires teams of researchers with diverse skills in organismal mycology, bioinformatics and molecular biology. This issue of...
Resource Type:: Article
Full Text:: mycology David S. Hibbett1 Biology Department, Clark University, Worcester, Massachusetts 01610 Jason E

Oxygen isotope measurements of seawater (H₂¹⁸)O/H₂¹⁶O): A comparison of cavity ring-down spectroscopy (CRDS) and isotope ratio mass spectrometry (IRMS)

Creator:: Walker, S. A., Azetsu-Scott, K., Normandeau, C,, Kelley, D. E., Friedrich, R., Newton, R., Schlosser, P., McKay, J. L., Abdi, W., Kerrigan, E., Craig, S. E., and Wallace, D. W. R.
Abstract:: Laser-based spectroscopic techniques, such as cavity ring-down spectroscopy (CRDS), provide a new, cost effective and more widely available approach to measure the oxygen isotope ratio in water molecules, H₂¹⁸O/H₂¹⁶O (δ¹⁸O), and are used increasingly to measure δ¹⁸O in the world's oceans. Here, we present results from an interlaboratory comparison designed...
Resource Type:: Article
Full Text:: -down spectroscopy (CRDS) and isotope ratio mass spectrometry (IRMS) S. A. Walker,*1 K. Azetsu-Scott

ScholarsArchive@OSU

Literature-Based Gene Curation and Proposed Genetic Nomenclature for Cryptococcus

Modeling non-Darcy flows in realistic pore-scale proppant geometries

A quantum phase transition in a quantum external field: Superposing two magnetic phases

Population Structure of Pythium irregulare, P. ultimum, and P. sylvaticum in Forest Nursery Soils of Oregon and Washington

The Gene Ontology in 2010: extensions and refinements

State of the Art in Large-Scale Soil Moisture Monitoring

The Soil Moisture Active Passive Marena, Oklahoma, In Situ Sensor Testbed (SMAP-MOISST): Testbed Design and Evaluation of In Situ Sensors

Thermal optimality of net ecosystem exchange of carbon dioxide and underlying mechanisms

Toward genome-enabled mycology

Oxygen isotope measurements of seawater (H₂¹⁸)O/H₂¹⁶O): A comparison of cavity ring-down spectroscopy (CRDS) and isotope ratio mass spectrometry (IRMS)

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