Index Catalog // ScholarsArchive@OSU

20 GB in 10 minutes: a case for linking major biodiversity databases using an open socio-technical infrastructure and a pragmatic, cross-institutional collaboration

Creator:: Thessen, Anne E., Poelen, Jorrit H., Collins, Matthew, and Hammock, Jen
Abstract:: Biodiversity information is made available through numerous databases that each have their own data models, web services, and data types. Combining data across databases leads to new insights, but is not easy because each database uses its own system of identifiers. In the absence of stable and interoperable identifiers, databases...
Resource Type:: Article
Full Text:: September 2018 Corresponding author Anne E. Thessen, annethessen@gmail.com Academic editor Alessandro

Emerging semantics to link phenotype and environment

Creator:: Thessen, Anne E., Bunkers, Daniel E., Buttigieg, Pier Luigi, Cooper, Laurel D., Dahdul, Wasila M., Domisch, Sami, Franz, Nico M., Jaiswal, Pankaj, Lawrence-Dill, Carolyn J., Midford, Peter E., Mungall, Christopher J., Ramírez, Martín J., Specht, Chelsea D., Vogt, Lars, Aldo Vos, Rutger, Walls, Ramona L., White, Jeffrey W., Zhang, Guanyang, Deans, Andrew R., Huala, Eva, Lewis, Suzanna E., and Mabee, Paula M.
Abstract:: Understanding the interplay between environmental conditions and phenotypes is a fundamental goal of biology. Unfortunately, data that include observations on phenotype and environment are highly heterogeneous and thus difficult to find and integrate. One approach that is likely to improve the status quo involves the use of ontologies to standardize...
Resource Type:: Article
Full Text:: Accepted 12 November 2015 Published 14 December 2015 Corresponding author Anne E. Thessen, annethessen

Finding Our Way through Phenotypes

Creator:: Deans, Andrew R., Lewis, Suzanna E., Huala, Eva, Anzaldo, Salvatore S., Ashburner, Michael, Balhoff, James P., Blackburn, David C., Blake, Judith A., Burleigh, J. Gordon, Chanet, Bruno, Cooper, Lauren D., Courtot, Mélanie, Csösz, Sándor, Cul, Hong, Dahdul, Wasila, Das, Sandip, Dececchi, T. Alexander, Dettal, Agnes, Diogo, Rui, Druzinsky, Robert E., Dumontier, Michel, Franz, Nico M., Friedrich, Frank, Gkoutos, George V., Haendel, Melissa, Harmon, Luke J., Hayamizu, Terry F., He, Yongqun, Hines, Heather M., Ibrahim, Nizar, Jackson, Laura M., Jaiswal, Pankaj, James-Zorn, Christina, Köhler, Sebastian, Lecointre, Guillaume, Lapp, Hilmar, Lawrence, Carolyn J., Le Novère, Nicolas, Lundberg, John G., Macklin, James, Mast, Austin R., Midford, Peter E., Mikó, István, Mungall, Christopher J., Oellrich, Anika, Osumi-Sutherland, David, Parkinson, Helen, Ramírez, Martín J., Richter, Stefan, Robinson, Peter N., Ruttenberg, Alan, Schulz, Katja S., Segerdell, Erik, Seltmann, Katja C., Sharkey, Michael J., Smith, Aaron D., Smith, Barry, Specht, Chelsea D., Squires, R. Burke, Thacker, Robert W., Thessen, Anne, Fernandez-Triana, Jose, Vihinen, Mauno, Vize, Peter D., Vogt, Lars, Wall, Christine E., Walls, Ramona L., Westerfeld, Monte, Wharton, Robert A., Wirkner, Christian S., Woolley, James B., Yoder, Matthew J., Zorn, Aaron M., and Mabee, Paula
Abstract:: Despite a large and multifaceted effort to understand the vast landscape of phenotypic data, their current form inhibits productive data analysis. The lack of a community-wide, consensus-based, human- and machine-interpretable language for describing phenotypes and their genomic and environmental contexts is perhaps the most pressing scientific bottleneck to integration across...
Resource Type:: Article
Full Text:: through Phenotypes Deans, A. R., Lewis, S. E., Huala, E., Anzaldo, S. S., Ashburner, M., et al. (2015

The Northwest Archivists Mentoring Program: A Case Study

Creator:: McCrea, Donna E., Nielsen, Elizabeth A., and Foster, Anne
Abstract:: The Northwest Archivists (NWA), a regional archival association in the Pacific Northwest, established a formal mentoring program in 2007. A pilot phase of the program ran for 2 years and included both formative and summative assessments from participants. This case study documents NWA’s experiences designing and managing a mentoring program...
Resource Type:: Article
Full Text:: donna e. mccrea, elizabeth a. Nielsen, and anne foster350 the

Charred forests increase snowmelt: Effects of burned woody debris and incoming solar radiation on snow ablation

Creator:: Gleason, Kelly E., Nolin, Anne W., and Roth, Travis R.
Abstract:: We document effects of postfire forest conditions on snow accumulation, albedo, and ablation in the Oregon Cascades. We measured snow water equivalent, solar radiation, snow albedo, and snowpack surface debris at a pair of burned and unburned forest plots. Snow accumulation was greater in the burned forest; however, the snowpack...
Resource Type:: Article
Full Text:: : Effects of burned woody debris and incoming solar radiation on snow ablation Kelly E. Gleason,1 Anne W

Pathogenicity and Virulence of Pythium Species Obtained from Forest Nursery Soils on Douglas-Fir Seedlings

Creator:: Weiland, Jerry E., Beck, Bryan R., and Davis, Anne
Abstract:: Pythium species are common soilborne oomycetes that occur in forest nursery soils throughout the United States. Numerous species have been described from nursery soils. However, with the exception of P. aphanidermatum, P irregulare, P. sylvaticum, and P ultimum, little is known about the potential for other Pythium species found in...
Resource Type:: Article
Full Text:: E. Weiland, Bryan R. Beck, and Anne Davis, United States Department of Agriculture – Agriculture

Leg 204 synthesis : gas hydrate distribution and dynamics in the Central Cascadia accretionary complex

Creator:: Tréhu, Anne Martine, Torres, Marta E., Bohrmann, G., and Colwell, Frederick
Abstract:: Ocean Drilling Program (ODP) Leg 204 to Hydrate Ridge, located on the continental slope offshore Oregon (USA), was the first drilling expedition dedicated to understanding gas hydrate processes in accretionary complexes and provided a testbed for a number of different techniques for estimating the gas hydrate content of sediments. It...
Resource Type:: Article
Full Text:: Pacific plate Blanco transform fault Ju an d e F uc a R id ge Explorer plate Nitinat Fan

Seismic sequence stratigraphy and tectonic evolution of Southern Hydrate Ridge

Creator:: Chevallier, Johanna, Tréhu, Anne Martine, Bangs, Nathan Lawrence Bailey, Johnson, Joel E., and Meyer, H. Jack
Abstract:: This paper presents a seismic sequence and structural analysis of a high-resolution three-dimensional seismic reflection survey that was acquired in June 2000 in preparation for Ocean Drilling Program (ODP) Leg 204. The seismic data were correlated with coring and logging results from nine sites drilled in 2002 during Leg 204....
Resource Type:: Article
Full Text:: TECTONIC EVOLUTION OF SOUTHERN HYDRATE RIDGE1 Johanna Chevallier,2,3 Anne M. Tréhu,2 Nathan L. Bangs,4

Periglacial debris-flow initiation and susceptibility and glacier recession from imagery, airborne LiDAR, and ground-based mapping

Creator:: Lancaster, Stephen T., Nolin, Anne W., Copeland, Elizabeth A., and Grant, Gordon E.
Abstract:: Climate changes in the Pacific Northwest, USA, may cause both retreat of alpine glaciers and increases in the frequency and magnitude of storms delivering rainfall at high elevations absent significant snowpack, and both of these changes may affect the frequency and severity of destructive debris flows initiating on the region's...
Resource Type:: Article
Full Text:: . Lancaster1,*, Anne W. Nolin1, Elizabeth A. Copeland1, and Gordon E. Grant2 1College of Earth, Ocean, and

Nitrification Responses of Soil Ammonia-Oxidizing Archaea and Bacteria to Ammonium Concentrations

Creator:: Giguere, Andrew T., Taylor, Anne E., Myrold, David D., and Bottomley, Peter J.
Abstract:: Although ammonia-oxidizing archaea (AOA) and bacteria (AOB) coexist in most non-acidic agricultural soils, the factors that influence their relative contributions to soil nitrification activity remain unclear. A 2- to 4-d whole soil microcosm assay was developed, utilizing the aliphatic C₈ alkyne 1-octyne to inactivate AOB-driven nitrification activity without impacting AOA...
Resource Type:: Article
Full Text:: archaea and bacteria to ammonia 1 additions. 2 3 Andrew Giguere a, Anne Taylor a, David Myrold a

ScholarsArchive@OSU

20 GB in 10 minutes: a case for linking major biodiversity databases using an open socio-technical infrastructure and a pragmatic, cross-institutional collaboration

Emerging semantics to link phenotype and environment

Finding Our Way through Phenotypes

The Northwest Archivists Mentoring Program: A Case Study

Charred forests increase snowmelt: Effects of burned woody debris and incoming solar radiation on snow ablation

Pathogenicity and Virulence of Pythium Species Obtained from Forest Nursery Soils on Douglas-Fir Seedlings

Leg 204 synthesis : gas hydrate distribution and dynamics in the Central Cascadia accretionary complex

Seismic sequence stratigraphy and tectonic evolution of Southern Hydrate Ridge

Periglacial debris-flow initiation and susceptibility and glacier recession from imagery, airborne LiDAR, and ground-based mapping

Nitrification Responses of Soil Ammonia-Oxidizing Archaea and Bacteria to Ammonium Concentrations

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