Survival of marine fishes during their early life history stage is tightly related to prey availability and predation pressure. Yet, our understanding of how individual larvae to entire assemblages are constrained by these factors is limited. We integrated biological sampling of larval fishes with fine-scale in situ imaging to relate...
Most benthic marine fishes have a biphasic life cycle with a dispersive pelagic larval stage that spends weeks to months in the plankton before metamorphosing into juveniles and settling to benthic habitats. The magnitude of mortality during the early life stages of marine fishes typically drives variability in year-class strength....
Most marine fishes experience high rates of mortality during their early life history stages with far reaching consequences for adult population dynamics. Within a few weeks of hatching, relatively small changes in larval growth and mortality rates can lead to orders of magnitude variability in year-class strength. Growth and survival...
The function of a protein is defined by its three-dimensional structure, and in understanding the three-dimensional structure of a protein, we gain an understanding of its function and mechanism. Protein structures, especially at high resolution, can provide detailed insights into many elements of enzyme function and catalysis – identifying residues...
This dissertation focuses on extending the application scope of surface enhanced infrared absorption spectroscopy to gas sensing. The method we propose is incorporating plasmonic nanostructures with nano-composite material, metalorganic framework, which can selectively preconcentrate certain gas molecules into the nanopores. The preconcentrating property is first demonstrated by applying metal-organic framework...
This dissertation focuses on the application of diatom frustules, the biosilica shell of an algae possessing physical and photonic properties capable of enhancing optical signals, for the enhancement of optical sensing. In this work, we incorporate diatom frustules into biosensors for signal enhancement and improved target molecule detection. The potential...
With the rapid growth of worldwide internet traffic in data centers and clouds, silicon photonics has been utilized to provide enormous data bandwidth and outstanding energy efficiency over electronics. Computing servers and storage servers that are connected by communication links are relying more on optical rather than electrical means mainly...
This dissertation focuses on the development of ultra-compact optical devices for free-space modulation. We propose a surface-normal modulator using metallic photonic crystals for free-space optical interconnects. The active control of light intensity is achieved by engineering the Fano resonances in metallic photonic crystals. Both thermo-optic modulation and electro-optic modulation of...
Vibrio parahaemolyticus is a leading cause of acute gastroenteritis associated with consumption of seafood, particularly raw oysters. The United States Centers for Disease Control and Prevention (CDC) estimated that 45,000 cases of V. parahaemolyticus infection occur each year in the U.S. A recent CDC report revealed that the incidence of...
Distribution of Vibrio parahaemolyticus in Oregon and Washington oystergrowing areas was studied between November 2002 and October 2003. V. parahaemolyticus was detected in 14.3% of oyster, 23.0% of seawater, and 44.4% of sediment samples with very low levels (≤7.4 MPN/g) of pathogenic strains being detected in oysters. Occurrence of V....