Seagrasses and coral reefs play important roles in nutrient cycling, coastal protection, and maintaining marine biodiversity. However, these coastal marine organisms are declining globally due to anthropogenic stressors, such as rising ocean temperatures, ocean acidification, and eutrophication. These organisms live in close association with their microbiomes, which can be beneficial...
Forecasts of the impacts of climate change have traditionally focused on individual species and their phenotypes, phenology, or distribution. However, shifts in species distributions and the resulting reorganization of community composition represent an important violation to the assumption of species acting in isolation. Whereas species may respond individualistically to climate...
The role that anthropogenic and natural habitats in estuaries play in long-term population trends for Oregon’s nearshore marine fishes is poorly understood, in part due to limited temporal sampling. One important nearshore marine group is northeastern Pacific rockfishes (Sebastes spp.), which are highly diverse, with around 96 documented species, and...
Interest is expanding for the potential role of estuaries, particularly seagrass and salt marsh habitats, to sequester carbon, mitigate ocean acidification, and support abundant fisheries. The important functions of estuaries are part of a broader set of ecosystem services, or benefits to humans, which are regulated by ocean and watershed...
The focus of this thesis is to design, characterize, and apply novel computational methods and molecular systems to interrogate heterogeneous human gut microbiome-related phenomena. In Chapter 2, I design, implement, and characterize a method for embedding co-occurrence patterns derived from massive 16s amplicon datasets. I use this method to 1....
This dissertation focuses on personal privacy in human-robot interaction, which we call "privacy-sensitive robotics." Our understanding of "privacy" is very broad, including not just information privacy but also physical, psychological, and social privacy. We begin by surveying the scholarly literature on privacy and talking about why it applies to interactions...