Index Catalog // ScholarsArchive@OSU

Connecting Tidal-fluvial Life Histories to Survival of McKenzie River Spring Chinook Salmon (Oncorhynchus tshawytscha)

Creator:: Rose, Gordon W.
Abstract:: Chinook salmon returns to the Columbia River basin have declined due to impacts of a growing human population, despite significant mitigation expenditures. Consequently, fisheries managers have become focused on recovery and long-term viability of at-risk populations. A viable population depends, in part, on the connectivity and quality of diverse habitat...
Resource Type:: Masters Thesis
Full Text:: ), and NOAA Fisheries. My committee members at Oregon State, Dan Bottom, Jessica Miller, Mark

Effects of disposable PET plastic bottle usage and waste in America's national parks

Creator:: Spooner, Ashley
Abstract:: The rapid accumulation of polyethylene terephthalate (PET) plastic waste caused by disposable plastic water bottle use is a worldwide problem that will continue to affect our environment, economy and society unless new methods of reduction and degradation are explored. The large amounts of energy and resources that are required during...
Resource Type:: Capstone Project

Identification of optimal broodstock for Pacific Northwest oysters

Creator:: Stick, David A.
Abstract:: The United States Pacific Northwest is well known for its shellfish farming. Historically, commercial harvests were dominated by the native Olympia oyster, Ostrea lurida, but over-exploitation, habitat degradation, and competition and predation by non-native species has drastically depleted their densities and extirpated many local populations. As a result, shellfish aquaculture...
Resource Type:: Dissertation
Full Text:: : _____________________________________________________________________________________________ Christopher J. Langdon Mark D. Camara The United States Pacific Northwest is

Outcome of the First wwPDB/CCDC/D3R Ligand Validation Workshop

Creator:: Adams, Paul D., Aertgeerts, Kathleen, Bauer, Cary, Bell, Jeffrey A., Berman, Helen M., Bhat, Talapady N., Blaney, Jeff M., Bolton, Evan, Bricogne, Gerard, Brown, David, Burley, Stephen K., Case, David A., Clark, Kirk L., Darden, Tom, Emsley, Paul, Feher, Victoria A., Feng, Zukang, Groom, Colin R., Harris, Seth F., Hendle, Jorg, Holder, Thomas, Joachimiak, Andrzej, Kleywegt, Gerard J., Krojer, Tobias, Marcotrigiano, Joseph, Mark, Alan E., Markley, John L., Miller, Matthew, Minor, Wladek, Montelione, Gaetano T., Murshudov, Garib, Nakagawa, Atsushi, Nakamura, Haruki, Nicholls, Anthony, Nicklaus, Marc, Nolte, Robert T., Padyana, Anil K., Peishoff, Catherine E., Pieniazek, Susan, Read, Randy J., Shao, Chenghua, Sheriff, Steven, Smart, Oliver, Soisson, Stephen, Spurlino, John, Stouch, Terry, Svobodova, Radka, Tempel, Wolfram, Terwilliger, Thomas C., Tronrud, Dale, Velankar, Sameer, Ward, Suzanna C., Warren, Gregory L., Westbrook, John D., Williams, Pamela, Yang, Huanwang, and Young, Jasmine
Abstract:: Crystallographic studies of ligands bound to biological macromolecules (proteins and nucleic acids) represent an important source of information concerning drug-target interactions, providing atomic level insights into the physical chemistry of complex formation between macromolecules and ligands. Of the more than 115,000 entries extant in the Protein Data Bank (PDB) archive,...
Resource Type:: Article

Bcl11b is at the Nexus of Wnt and MAP Kinase Signaling Pathways in Two Stages of Thymocyte Development

Creator:: Selman, Wisam H.
Abstract:: Leukemogenesis, uncontrolled proliferation of dysfunctional, transformed immature lymphocytes, appears, especially in children, to be associated with abrogation of normal lymphopoiesis, and thymopoiesis in the case of T cell leukemias. Sequence specific transcription factors (SSTFs) are nuclear control switches that respond to cellular signals to alter cell state and cell fate...
Resource Type:: Dissertation
Full Text:: her efforts. I would like to acknowledge my graduate committee members. I am grateful to Dr. Mark

Structural and Functional Characterization of MppR, an Enduracididine Biosynthetic Enzyme from Streptomyces hygroscopicus: Functional Diversity in the Acetoacetate Decarboxylase-like Superfamily

Creator:: Burroughs, A. Maxwell, Hoppe, Robert W., Goebel, Neal C., Sayyed, Bilal H., Voegtline, Tyler J., Schwabacher, Alan W., Zabriskie, T. Mark, and Silvaggi, Nicholas R.
Abstract:: The nonproteinogenic amino acid enduracididine is a critical component of the mannopeptimycins, cyclic glycopeptide antibiotics with activity against drug-resistant pathogens, including methicillin-resistant Staphylococcus aureus. Enduracididine is produced in Streptomyces hygroscopicus by three enzymes, MppP, MppQ, and MppR. On the basis of primary sequence analysis, MppP and MppQ are pyridoxal 5'-phosphate-dependent...
Resource Type:: Article
Full Text:: . Goebel,§ Bilal H. Sayyed,‡ Tyler J. Voegtline,‡ Alan W. Schwabacher,‡ T. Mark Zabriskie,§ and Nicholas R

Patterns of retention and vagrancy in larval Lost River and shortnose suckers from Upper Klamath Lake, Oregon

Creator:: Reithel, Susan A.
Abstract:: Larval transport and retention of two endangered suckers were studied in a highly altered lacustrine/riverine complex. The endangered populations of Lost River sucker, Deltistes luxatus, and shortnose sucker, Chasmistes brevirostris, in Upper Klamath Lake (UKL), Oregon are the largest remnant populations of these suckers. Downstream of UKL, the Keno Impoundment...
Resource Type:: Masters Thesis
Full Text:: thank my coworkers at Oregon State University especially D. Simon, M. Terwilliger, S. Remple, M

Mechanistic Insights into Validoxylamine A 7’-Phosphate Synthesis by VldE Using the Structure of the Entire Product Complex

Creator:: Cavalier, Michael C., Yim, Young-Sun, Asamizu, Shumpei, Neau, David, Almabruk, Khaled H., Mahmud, Taifo, and Lee, Yong-Hwan
Abstract:: The pseudo-glycosyltransferase VldE catalyzes non-glycosidic C-N coupling between an unsaturated cyclitol and a saturated aminocyclitol with the conservation of the stereochemical configuration of the substrates to form validoxylamine A 7'-phosphate, the biosynthetic precursor of the antibiotic validamycin A. To study the molecular basis of its mechanism, the three-dimensional structures of...
Resource Type:: Article
Full Text:: . Residues/molecules of interest are represented in stick models. The dotted lines mark hydrogen bonds and

Aggregation of Sea Urchin Phagocytes Is Augmented In Vitro by Lipopolysaccharide

Creator:: Majeske, Audrey J., Bayne, Christopher J., and Smith, L. Courtney
Abstract:: Development of protocols and media for culturing immune cells from marine invertebrates has not kept pace with advancements in mammalian immune cell culture, the latter having been driven by the need to understand the causes of and develop therapies for human and animal diseases. However, expansion of the aquaculture industry...
Resource Type:: Article
Full Text:: immunocytology and stained as in Figure 3. Merged images are shown in D and H. Arrows in A mark the direction of

Ecosystem services provided by Olympia oyster (Ostrea lurida) habitat and Pacific oyster (Crassostrea gigas) habitat; Dungeness crab (Metacarcinus magister) production in Willapa Bay, WA

Creator:: Ramsay, Jessica
Abstract:: Oyster reefs provide an array of ecosystem services. Specifically, they provide structurally complex habitat for fish and invertebrate species such as the commercially important Dungeness crab, Metacarcinus magister. This ecosystem service, once provided by the native oyster Ostrea lurida, is now provided by the commercially cultured oyster Crassostrea gigas in...
Resource Type:: Capstone Project

ScholarsArchive@OSU

Connecting Tidal-fluvial Life Histories to Survival of McKenzie River Spring Chinook Salmon (Oncorhynchus tshawytscha)

Effects of disposable PET plastic bottle usage and waste in America's national parks

Identification of optimal broodstock for Pacific Northwest oysters

Outcome of the First wwPDB/CCDC/D3R Ligand Validation Workshop

Bcl11b is at the Nexus of Wnt and MAP Kinase Signaling Pathways in Two Stages of Thymocyte Development

Structural and Functional Characterization of MppR, an Enduracididine Biosynthetic Enzyme from Streptomyces hygroscopicus: Functional Diversity in the Acetoacetate Decarboxylase-like Superfamily

Patterns of retention and vagrancy in larval Lost River and shortnose suckers from Upper Klamath Lake, Oregon

Mechanistic Insights into Validoxylamine A 7’-Phosphate Synthesis by VldE Using the Structure of the Entire Product Complex

Aggregation of Sea Urchin Phagocytes Is Augmented In Vitro by Lipopolysaccharide

Ecosystem services provided by Olympia oyster (Ostrea lurida) habitat and Pacific oyster (Crassostrea gigas) habitat; Dungeness crab (Metacarcinus magister) production in Willapa Bay, WA

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