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Creator:: Weitemier, Kevin, Straub, Shannon C. K., Fishbein, Mark, and Liston, Aaron
Abstract:: Despite knowledge that concerted evolution of high-copy loci is often imperfect, studies that investigate the extent of intragenomic polymorphisms and comparisons across a large number of species are rarely made. We present a bioinformatic pipeline for characterizing polymorphisms within an individual among copies of a high-copy locus. Results are presented...
Full Text:: author Kevin Weitemier, kevin.weitemier@science. oregonstate.edu Academic editor Gerard Lazo Additional

Creator:: Weitemier, Kevin, Straub, Shannon C. K., Fishbein, Mark, and Liston, Aaron
Abstract:: Despite knowledge that concerted evolution of high-copy loci is often imperfect, studies that investigate the extent of intragenomic polymorphisms and comparisons across a large number of species are rarely made. We present a bioinformatic pipeline for characterizing polymorphisms within an individual among copies of a high-copy locus. Results are presented...

Creator:: Weitemier, Kevin, Straub, Shannon C. K., Fishbein, Mark, and Liston, Aaron
Abstract:: Despite knowledge that concerted evolution of high-copy loci is often imperfect, studies that investigate the extent of intragenomic polymorphisms and comparisons across a large number of species are rarely made. We present a bioinformatic pipeline for characterizing polymorphisms within an individual among copies of a high-copy locus. Results are presented...
Resource Type:: Article

Creator:: Coble, Ashley A., Flinders, Camille A., Homyack, Jessica A., Penaluna, Brooke E., Cronn, Richard C., and Weitemier, Kevin
Abstract:: Environmental DNA (eDNA) is an emerging biological monitoring tool that can aid in assessing the effects of forestry and forest manufacturing activities on biota. Monitoring taxa across broad spatial and temporal scales is necessary to ensure forest management and forest manufacturing activities meet their environmental goals of maintaining biodiversity. Our...
Resource Type:: Article
Full Text:: . Coble, Camille A. Flinders, Jessica A. Homyack, Brooke E. Penaluna, Richard C. Cronn, Kevin Weitemier

Creator:: Schmickl, Roswitha, Liston, Aaron, Zeisek, Vojtěch, Oberlander, Kenneth, Weitemier, Kevin, Straub, Shannon C. K., Cronn, Richard C., Dreyer, Léanne L., and Suda, Jan
Abstract:: Phylogenetics benefits from using a large number of putatively independent nuclear loci and their combination with other sources of information, such as the plastid and mitochondrial genomes. To facilitate the selection of orthologous low‐copy nuclear (LCN) loci for phylogenetics in nonmodel organisms, we created an automated and interactive script to...
Resource Type:: Article
Full Text:: : Schmickl, R. , Liston, A. , Zeisek, V. , Oberlander, K. , Weitemier, K. , Straub, S. C., Cronn, R. C

Creator:: Muñoz-Rodríguez, Pablo, Carruthers, Tom, Wood, John R.I., Williams, Bethany R.M., Weitemier, Kevin, Kronmiller, Brent, Ellis, David, Anglin, Noelle L., Longway, Lucas, Harris, Stephen A., Rausher, Mark D., Kelly, Steven, Liston, Aaron, and Scotland, Robert W.
Abstract:: The sweet potato is one of the world’s most widely consumed crops, yet its evolutionary history is poorly understood. In this paper, we present a comprehensive phylogenetic study of all species closely related to the sweet potato and address several questions pertaining to the sweet potato that remained unanswered. Our...
Resource Type:: Article
Full Text:: -Rodríguez, Tom Carruthers, John R.I. Wood, Bethany R.M. Williams, Kevin Weitemier, Brent Kronmiller, David

Creator:: Tennessen, Jacob A., Govindarajulu, Rajanikanth, Ashman, Tia-Lynn, and Liston, Aaron
Abstract:: Whole-genome duplications are radical evolutionary events that have driven speciation and adaptation in many taxa. Higher-order polyploids have complex histories often including interspecific hybridization and dynamic genomic changes. This chromosomal reshuffling is poorly understood for most polyploid species, despite their evolutionary and agricultural importance, due to the challenge of distinguishing...

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