Index Catalog // ScholarsArchive@OSU

Comparative Transcriptomics in Stress-Induced Rice

Creator:: Al-Bader, Noor M.
Abstract:: Rice is an important crop that feeds almost half the world population. As climate change models predict floods, drought and extreme temperatures in rice production areas, the need to better understand the genetic basis of adaptation and tolerance to abiotic and biotic stresses is vital to sustain our food supply....
Resource Type:: Dissertation
Full Text:: -Associated Kinase 91 (OsWAK91) gene confers sheath blight disease resistance in rice

Overexpression of thiamin biosynthesis genes increase leaf and seed thiamin content but not resistance to Xanthomonas oryzae in rice

Creator:: Dong, Wei, Thomas, Nicholas, Ronald, Pamela C., and Goyer, Aymeric
Abstract:: Thiamin diphosphate (ThDP), also known as vitamin B1, serves as an enzymatic cofactor in glucose metabolism, the Krebs cycle, and branched-chain amino acid biosynthesis in all living organisms. Unlike plants and microorganisms, humans are not able to synthesize ThDP de novo and must obtain it from their diet. Staple crops...
Resource Type:: Article
Full Text:: fungicide carbendazim against sheath blight disease in rice (Oryza sativa L.). Plant Physiol. Biochem. 57

Pacific Madrone Leaf Blight Detection with Unmanned Aerial Systems and Machine Learning

Creator:: Barker, Matthew I.
Abstract:: Ground-based assessments of foliar diseases including leaf blight are time-consuming and costly. We investigated the potential for using an unmanned aerial system (UAS) in conjunction with a multispectral sensor to determine whether we could more efficiently and reliably detect and quantify leaf blight in Pacific madrones. Our methods included ground-based...
Resource Type:: Masters Thesis
Full Text:: disease severity associated with sheath blight in rice crops (R2 = 0.627). Disease Detection with

Genetic dissection of Victoria blight disease susceptibility in Arabidopsis thaliana

Creator:: Sweat, Teresa A.
Abstract:: The fungus Cochliobolus victoriae causes Victoria blight of oats and Arabidopsis and is pathogenic due to its production of a compound called victorin, which induces programmed cell death in sensitive plants. Victorin sensitivity in Arabidopsis is conferred by the dominant gene LOCUS ORCHESTRATING VICTORIN EFFECTS1 (LOV1), which encodes a coiled-coil-nucleotide...
Resource Type:: Dissertation
Full Text:: presented on March 27, 2007. Title: Genetic Dissection of Victoria Blight Disease Susceptibility in

Biocuration of rice (Oryza sativa) transcription factor networks involved in abiotic stress response

Creator:: El-Husseini, Sarah
Abstract:: Rice (Oryza sativa) is a common crop found in various regions worldwide where it is considered a staple food. Though widespread, O. sativa plants' growth, development, and yield are affected by environmental/abiotic stresses including drought, salinity, flooding, cold, heat, etc. Particularly, salinity stress leads to dehydration, overwhelms potassium pumps, and...
Resource Type:: Honors College Thesis
Full Text:: of rice genomes, Pan-genomes and transcriptomes sequences, and genetic variation data makes it

QlicRice: a web interface for abiotic stress responsive QTL and loci interaction channels in rice

Creator:: Smita, Shuchi, Lenka, Sangram Keshari, Katiyar, Amit, Jaiswal, Pankaj, Preece, Justin, and Bansal, Kailash Chander
Abstract:: The QlicRice database is designed to host publicly accessible, abiotic stress responsive quantitative trait loci (QTLs) in rice (Oryza sativa) and their corresponding sequenced gene loci. It provides a platform for the data mining of abiotic stress responsive QTLs, as well as browsing and annotating associated traits, their location on...
Resource Type:: Article
Full Text:: responsive QTLs inte- grated with rice genomics data to query the large amount of available information on

Microsatellite Marker Development, Characterization, and Mapping and Investigation of New Sources of Resistance to Eastern Filbert Blight (EFB) in European Hazelnut (Corylus avellana)

Creator:: Sekerli, Merve
Abstract:: European Hazelnut (Corylus avellana L.) is an important crop in the Pacific Northwest where around 5% of the world's hazelnuts are produced. Hazelnut production in the Pacific Northwest is threatened by eastern filbert blight (EFB) caused by the pyrenomycete Anisogramma anomala. Host resistance is a useful strategy to control disease,...
Resource Type:: Masters Thesis
Full Text:: to Eastern Filbert Blight (EFB) in European Hazelnut (Corylus avellana) Abstract

WikiPathways for plants: a community pathway curation portal and a case study in rice and arabidopsis seed development networks

Creator:: Hanumappa, Mamatha, Preece, Justin, Elser, Justin, Nemeth, Denise, Bono, Gina, Wu, Kenny, and Jaiswal, Pankaj
Abstract:: Background: Next-generation sequencing and 'omics' platforms are used extensively in plant biology research to unravel new genomes and study their interactions with abiotic and biotic agents in the growth environment. Despite the availability of a large and growing number of genomic data sets, there are only limited resources providing highly-curated...
Resource Type:: Article
Full Text:: in the rice network were identified by further com- parison with data sets from Sato et al. (2011

A genome scale metabolic network for rice and accompanying analysis of tryptophan, auxin and serotonin biosynthesis regulation under biotic stress

Creator:: Dharmawardhana, Palitha, Ren, Liya, Amarasinghe, Vindhya, Monaco, Marcela, Thomason, Jim, Ravenscroft, Dean, McCouch, Susan, Ware, Doreen, and Jaiswal, Pankaj
Abstract:: Background: Functional annotations of large plant genome projects mostly provide information on gene function and gene families based on the presence of protein domains and gene homology, but not necessarily in association with gene expression or metabolic and regulatory networks. These additional annotations are necessary to understand the physiology, development...
Resource Type:: Article
Full Text:: , using the RiceCyc platform and publicly available rice trans- criptomic data sets. Results and

Societal Responses to Using Genetic Engineering for Mitigating Chestnut Blight and Restoring American Chestnut Trees

Creator:: Petit, Joshua D.
Abstract:: Forests face health threats from pests and diseases (e.g., mountain pine beetle, emerald ash borer, chestnut blight [CB], Swiss needle cast), and other issues such as climate change. Interventions such as genetic engineering (GE) have shown promise for mitigating some of these threats. CB, for example, has impacted most American...
Resource Type:: Dissertation
Full Text:: . Title: Societal Responses to Using Genetic Engineering for Mitigating Chestnut Blight and

ScholarsArchive@OSU

Comparative Transcriptomics in Stress-Induced Rice

Overexpression of thiamin biosynthesis genes increase leaf and seed thiamin content but not resistance to Xanthomonas oryzae in rice

Pacific Madrone Leaf Blight Detection with Unmanned Aerial Systems and Machine Learning

Genetic dissection of Victoria blight disease susceptibility in Arabidopsis thaliana

Biocuration of rice (Oryza sativa) transcription factor networks involved in abiotic stress response

QlicRice: a web interface for abiotic stress responsive QTL and loci interaction channels in rice

Microsatellite Marker Development, Characterization, and Mapping and Investigation of New Sources of Resistance to Eastern Filbert Blight (EFB) in European Hazelnut (Corylus avellana)

WikiPathways for plants: a community pathway curation portal and a case study in rice and arabidopsis seed development networks

A genome scale metabolic network for rice and accompanying analysis of tryptophan, auxin and serotonin biosynthesis regulation under biotic stress

Societal Responses to Using Genetic Engineering for Mitigating Chestnut Blight and Restoring American Chestnut Trees

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