Index Catalog // ScholarsArchive@OSU

Computational Approaches for Understanding Combinatorial Gene Regulation

Creator:: Ansariola, Mitra
Abstract:: Gene regulation is a complex mechanism that controls the spatial and temporal expression of genes in a living cell. My dissertation studies focus on two problems. First, tissue-specific gene expression prediction from DNA sequence and chromatin state, and second, the accurate discovery of small over-represented regulatory circuits in gene regulatory...
Resource Type:: Dissertation
Full Text:: aspects of my projects. I thank my Ph.D. committee member Dr. Brett Tyler, previous teachers and mentors

Cascadia’s cold war : Malamud’s novel, A New Life, and OSU’s Liberal Arts at the midcentury

Creator:: Sal, K. Sukhjot
Abstract:: This thesis will compare former OSU Professor Bernard Malamud’s life in Corvallis through primary sources and documents with his parallel experience in his 1961 novel A New Life. A close examination of Malamud’s literature and investigation of his life at OSU exposes an uneven balance between academic censorship and the...
Resource Type:: Honors College Thesis
Full Text:: letter written after Malamud’s death, close friend Chester Garrison noted that his personal Hudson

Machine Learning for Precision Medicine: Application to Cancer Chemotherapy Response Prediction and Wound Healing Status Assessment

Creator:: Wei, Qi
Abstract:: Ph.D. candidate Qi Wei's thesis consists of two projects: Chemotherapy Project: a study based on the research paper "Predicting chemotherapy response of various cancer types using a variational auto-encoder approach" submitted to the bioRxiv preprint archive and accepted by the BMC bioinformatics; and Wound Monitor Project: implementing and assessing analytics...
Resource Type:: Dissertation

Vegetation Community Data to Inform Climate-Adaptation Management; Gardiner, New York

Creator:: Randazzo, Andrew
Abstract:: Climate change represents an increasing threat to northeastern temperate forests. Nearly all forest communities have been affected by climate change and require climate-adaptation management (Jandl et al. 2018). Climate-adaptation management (CAM) promotes the viability of forested systems and the ecosystem services they provide under current and future climatic conditions (Bolte...
Resource Type:: Capstone Project
Full Text:: trust responsible for managing approximately 8,000 acres of property in New York’s Hudson Valley. The

Spatial patterns and trends of summertime low cloudiness for the Pacific Northwest, 1996-2017

Creator:: Dye, Alex W., Rastogi, Bharat, Clemesha, Rachel E. S., Kim, John B., Samelson, Roger M., Still, Christopher J., and Williams, A. Park
Abstract:: Summertime low clouds are common in the Pacific Northwest (PNW), but spatiotemporal patterns have not been characterized. We show the first maps of low cloudiness for the western PNW and North Pacific Ocean using a 22‐year satellite‐derived record of monthly mean low cloudiness frequency for May through September and supplemented...
Resource Type:: Article
Full Text:: ., Clemesha, R. E. S., Kim, J. B., Samelson, R. M., Still, C. J., & Williams, A. P. (2020). Spatial patterns

Investigating Transcriptional Control of Specialized Gene Expression in Plants

Creator:: Fraser, Valerie N.
Abstract:: Specialized or secondary metabolism is a collection of pathways and small molecules that, while beneficial to an organism, are not strictly necessary for survival. Plants use secondary metabolites to, among other things, attract pollinators, defend against biotic and abiotic stressors, and form symbioses. Natural products from plants have seen an...
Resource Type:: Dissertation
Full Text:: have run into numerous bottlenecks and roadblocks along the way (Tyler, 1988). In planta, secondary

An Interdisciplinary-Botanical Perspective for Cultural Resource Management: A Definition and the Application of Culturally Significant Plants in Identification, Interpretation, and Evaluation for the National Register of Historic Places

Creator:: Burk, Rene F.
Abstract:: Cultivated plants are often living artifacts that can aid in evaluation of historic or cultural landscapes. However, a working definition for “culturally significant plant” is currently lacking in the guidance literature for the cultural resource management practitioners. Based on a review of the literature on cultivated plants as indicators of...
Resource Type:: Masters Thesis

Benthic marine algae on Japanese tsunami marine debris – a morphological documentation of the species. Part 3 - The green algae and cyanobacteria

Creator:: Hansen, Gayle I.
Abstract:: To determine the invasion threat to the NE Pacific of marine algae arriving on Japanese debris from the 2011 Great Tōhoku Earthquake and Tsunami, my colleagues and I identified the algal species on 42 of the most heavily fouled debris items that landed on the shores of Oregon and Washington...
Resource Type:: Presentation
Full Text:: Zealand; OR = Oregon; Phil = Philippines; R = Eastern Russia; SA = South America (both coasts); Viet

Planning for the Future Forest on the Northern Shawangunk Ridge: Climate-Adaptive Disturbance Preparedness and Response Recommendations

Creator:: Randazzo, Andrew
Abstract:: Mohonk Preserve intends to manage their forestland more actively with the mission of promoting forest health, climate-adaptation, and overall ecosystem health for the benefit of their community and recreational users. Climate-adaptive management recommendations (recommendations that address climate change vulnerabilities —by promoting either resistance, resilience, or transition— while helping to meet...
Resource Type:: Capstone Project
Full Text:: McHenry Hudson River Valley Fellowship Awards 2 Table of Contents Acknowledgments

A decade of tidal wetland development at the Ni-les’tun restoration project on the southern Oregon coast

Creator:: Janousek, Christopher, van de Wetering, Stan, Brophy, Laura, Cornu, Craig, and Tice-Lewis, Maxwell
Abstract:: The Ni-les’tun tidal wetland restoration project in the Coquille River Estuary in southern Oregon is one of the largest and most well-studied tidal restoration projects on the Pacific Northwest coast. However, ecological data on restoration effectiveness and ecosystem change following restoration are relatively rare for projects more than a few...
Resource Type:: Technical Report
Full Text:: , van Hoy R, Lowe RW, Ledig DB. 2017. Ni-les’tun tidal wetlands restoration project: Planning

ScholarsArchive@OSU

Computational Approaches for Understanding Combinatorial Gene Regulation

Cascadia’s cold war : Malamud’s novel, A New Life, and OSU’s Liberal Arts at the midcentury

Machine Learning for Precision Medicine: Application to Cancer Chemotherapy Response Prediction and Wound Healing Status Assessment

Vegetation Community Data to Inform Climate-Adaptation Management; Gardiner, New York

Spatial patterns and trends of summertime low cloudiness for the Pacific Northwest, 1996-2017

Investigating Transcriptional Control of Specialized Gene Expression in Plants

An Interdisciplinary-Botanical Perspective for Cultural Resource Management: A Definition and the Application of Culturally Significant Plants in Identification, Interpretation, and Evaluation for the National Register of Historic Places

Benthic marine algae on Japanese tsunami marine debris – a morphological documentation of the species. Part 3 - The green algae and cyanobacteria

Planning for the Future Forest on the Northern Shawangunk Ridge: Climate-Adaptive Disturbance Preparedness and Response Recommendations

A decade of tidal wetland development at the Ni-les’tun restoration project on the southern Oregon coast

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