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Filtering by: Alternative title ssim Induced variability and mutations in beans Remove constraint Alternative title ssim: Induced variability and mutations in beans Rights Statement In Copyright - Non-Commercial Use Permitted Remove constraint Rights Statement: In Copyright - Non-Commercial Use Permitted

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Investigating Transcriptional Control of Specialized Gene Expression in Plants

Creator:

Fraser, Valerie N.

Abstract:

Specialized or secondary metabolism is a collection of pathways and small molecules that, while beneficial to an organism, are not strictly necessary for survival. Plants use secondary metabolites to, among other things, attract pollinators, defend against biotic and abiotic stressors, and form symbioses. Natural products from plants have seen an...

Resource Type:

Dissertation

Full Text:

. Fraser for the degree of Doctor of Philosophy in Molecular and Cellular Biology presented on August 2
Investigating the Mechanisms for the Effects of Nitrate Treatment on Exercise Performance and Energy Metabolism

Creator:

Keller, Rosa M.

Abstract:

Dietary nitrate (NO3-), consumed primarily from leafy green and root vegetables, lowers blood pressure, improves vascular function and aerobic exercise performance. This performance-enhancing effect of nitrate supplementation is largely attributed to the increased bioavailability of the signaling molecule, nitric oxide (NO). Nitric oxide is a ubiquitous free radical signaling molecule...

Resource Type:

Dissertation

Full Text:

. This dissertation aims to: 1) determine the concentration of nitrate in a variety of foods and food
Toward a flexible and accurate approach to null network sampling

Creator:

Bright, Zachary A.

Abstract:

Null networks are a type of random graph that is favored for the analysis of a wide variety of real-world networks, including gene-regulatory networks, food webs, and species co-occurrence matrices. As a hypothesis-generating tool, null networks are invaluable because they can reveal network motifs and unusual large-scale properties of networks...

Resource Type:

Masters Thesis

Full Text:

Randomization An important and non-trivial factor in deciding which induced subgraphs are motifs is the choice
Computational Approaches for Understanding Combinatorial Gene Regulation

Creator:

Ansariola, Mitra

Abstract:

Gene regulation is a complex mechanism that controls the spatial and temporal expression of genes in a living cell. My dissertation studies focus on two problems. First, tissue-specific gene expression prediction from DNA sequence and chromatin state, and second, the accurate discovery of small over-represented regulatory circuits in gene regulatory...

Resource Type:

Dissertation

Full Text:

degree of Doctor of Philosophy in Molecular and Cellular Biology presented on January 5, 2018. Title
Restoring Ponderosa Pine: Understanding Individual Tree Defenses, Disturbance Responses, and Resilience

Creator:

Johnson, Christal

Abstract:

The aim of this research was to provide forest managers and researchers with a better understanding of individual tree defenses and tree responses to disturbances, within a Collaborative Forest Landscape Restoration Program area. Forest restoration often aims to increase stand-level resistance to uncharacteristic changes, and stand-level resistance begins with tree-level...

Resource Type:

Dissertation

Full Text:

likely to be entirely constitutive resin (pre-formed) and not induced resin (synthesized in response to
Machine Learning for Precision Medicine: Application to Cancer Chemotherapy Response Prediction and Wound Healing Status Assessment

Creator:

Wei, Qi

Abstract:

Ph.D. candidate Qi Wei's thesis consists of two projects: Chemotherapy Project: a study based on the research paper "Predicting chemotherapy response of various cancer types using a variational auto-encoder approach" submitted to the bioRxiv preprint archive and accepted by the BMC bioinformatics; and Wound Monitor Project: implementing and assessing analytics...

Resource Type:

Dissertation

Full Text:

all current and past team members in the Ramsey lab at the Oregon State University, especially to my
Training Community Health Workers in Oregon during a Public Health Crisis: Reflections on the Importance of Mental Health in Care-based Work

Creator:

Bompensa, Amanda A.

Abstract:

This ethnographic study addresses the concerns of Oregon based Community Health Workers during the COVID-19 pandemic. Through their shared perspectives on the importance of mental health and self-care, CHWs highlight the critical need to learn practical skills in their training in order to better support their communities. Recommendations made by...

Resource Type:

Masters Thesis

Full Text:

the pandemic in their communities; and precipitated a high level of staff turnover and burnout
An Interdisciplinary Agent-based Evacuation Modeling Framework: Seeking Convergence of Social, Natural, and Engineered Systems to Improve Life Safety in the Cascadia Subduction Zone

Creator:

Chen, Chen

Abstract:

Social scientists have studied people's responses to disasters for many decades, and behavioral commonalities and variations are summarized in different mental schemes/models in disaster studies. Integrating those findings from social science into evacuation simulation can improve simulation accuracy and eventually better support decision-making and disaster preparedness. However, this kind of...

Resource Type:

Dissertation

Full Text:

behavioral commonalities and variations are summarized in different mental schemes/models in disaster
Paleoseismic Record of Peninsula Segment Earthquakes on the San Andreas Fault near San Francisco, CA and possible NSAF linkage to Cascadia

Creator:

Goldfinger, Chris

Abstract:

Lake Merced results have established the lake as a viable paleoseismic site on the northern San Francisco peninsula. The lake records ~ 2300 years of event beds, 17 in total. Prior to that the lake was open to the ocean and contains marine shells consistent with an estuarine environment. The...

Resource Type:

Technical Report

Full Text:

site recorded three historic events, 1906, the 1957 Daly City earthquake, and Loma Prieta in 1989 with
Creating a Predictive Model of Cinder Cone Evolution in Central Oregon

Creator:

Das-Toke, Shyam P.

Abstract:

Cinder cones are useful geomorphic features for geological analysis because they generally have known initial states and follow a similar pattern of degradation as they are exposed to erosive processes. This is largely because cinder cones are produced by monogenetic eruptions. Characterizing large cinder cone fields in terms of age...

Resource Type:

Masters Thesis

Full Text:

are exposed to erosive processes. Characterizing large cinder cone fields in terms of age and

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Academic Affiliation

College of Earth, Ocean, and Atmospheric Sciences3
Biological and Population Health Sciences1
Botany and Plant Pathology1
Civil and Construction Engineering1
College of Education1
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Advisor

Megraw, Molly3
Bailey, John1
Conway, Flaxen D. L.1
Dykeman, Cass1
Kent, Adam J. R.1
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Commencement Year

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Current results range from 2011 to 2023

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Unknown 2

Committee Member

Fowler, John2
Anderson, Jeffrey C.1
Bailey, Mike1
Cann, David1
Cazares-Cervantes, Abraham1
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Creator

Ansariola, Mitra1
Bompensa, Amanda A.1
Bright, Zachary A.1
Chen, Chen1
Christensen, Neil Walter, 1944 1
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Contributor

Cox, Daniel1
Cramer, Lori1
Dykeman, Cass1
Hurwitz, David1
Koll, Charles1
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Current results range from 2009 to 2023

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2020-20299
2010-20193
2000-20091

Degree Field

Molecular and Cellular Biology2
Applied Anthropology1
Botany and Plant Pathology1
Civil Engineering1
Computer Science1
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Degree Level

Doctoral7
Master's4

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Doctor of Philosophy (Ph.D.)6
Master of Science (M.S.)3
Doctor of Education (Ed.D.)1
Master of Arts (M.A.)1

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pdf1

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English [eng]13

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Attribution-NonCommercial 4.0 (CC BY-NC 4.0)1
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Attribution-ShareAlike 4.0 (CC BY-SA 4.0)1

Non-Academic Affiliation

Oregon State University. Center for Genome Research and Biocomputing1
Oregon State University. Extension Service1
Oregon State University. Sea Grant College Program1

Peer Reviewed

No12
Yes1

Resource Type

Dissertation7
Masters Thesis3
Technical Report2
Capstone Project1

Rights Statement

In Copyright - Non-Commercial Use Permitted[remove]13

Subject

Applied machine learning1
Bioinformatics1
Computational biology1
Earthquakes1
Gene regulatory networks1
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