The dataset contains three loblolly pines (Pinus taeda Lindl.) stems reconstructed with terrestrial photogrammetric techniques. The trees were growing in west-central Louisiana, Vernon parish. The reconstructed models reached over 50% of the relative height, the proportion of the stem, on which the majority of the merchantable volume is located. After...
We form a new data set of fields of sea level anomalies by combining gridded daily fields derived from altimeter data with coastal tide gauge data. Within approximately 50-80 km of the coast, the altimeter data are discarded and replaced by a linear interpolation between the tide gauge and remaining...
We form a new data set of fields of sea level anomalies by combining gridded daily fields derived from altimeter data with coastal tide gauge data. Within approximately 50-80 km of the coast, the altimeter data are discarded and replaced by a linear interpolation between the tide gauge and remaining...
The dataset contains three loblolly pines (Pinus taeda Lindl.) stems reconstructed with terrestrial photogrammetric techniques. The trees were growing in west-central Louisiana, Vernon parish. The reconstructed models reached over 50% of the relative height, the proportion of the stem, on which the majority of the merchantable volume is located. After...
This dataset was used to determine the attenuation of an audio signal by reticulated foam samples that span the natural range of intrinsic permeability for seasonal snow. Data are audio measurements acquired on a two-channel oscilloscope.
Long-distance exchange has long been recognized as a critical factor in the history of the ancient Near East, yet few studies have utilized robust analytical methods to trace the production and movement of specific goods at the interregional scale. Mundane goods such as pottery are particularly under-studied, and owing to...
Long-distance exchange has long been recognized as a critical factor in the history of the ancient Near East, yet few studies have utilized robust analytical methods to trace the production and movement of specific goods at the interregional scale. Mundane goods such as pottery are particularly under-studied, and owing to...
This dataset contains trace-element data, descriptive information, and photographs for 328 field clays sampled in the Valley of Oaxaca, Mexico; mineralogical data are presented for a subset of the samples. The clay samples were generated as part of a valley-wide sampling strategy designed to capture spatial variation in clay composition...
Background: Triticum monococcum (2n) is a close ancestor of T. urartu, the A-genome progenitor of cultivated hexaploid wheat, and is therefore a useful model for the study of components regulating photomorphogenesis in diploid wheat. In order to develop genetic and genomic resources for such a study, we constructed genome-wide transcriptomes...
Background: Triticum monococcum (2n) is a close ancestor of T. urartu, the A-genome progenitor of cultivated hexaploid wheat, and is therefore a useful model for the study of components regulating photomorphogenesis in diploid wheat. In order to develop genetic and genomic resources for such a study, we constructed genome-wide transcriptomes...
Background: Triticum monococcum (2n) is a close ancestor of T. urartu, the A-genome progenitor of cultivated hexaploid wheat, and is therefore a useful model for the study of components regulating photomorphogenesis in diploid wheat. In order to develop genetic and genomic resources for such a study, we constructed genome-wide transcriptomes...
Background: Triticum monococcum (2n) is a close ancestor of T. urartu, the A-genome progenitor of cultivated hexaploid wheat, and is therefore a useful model for the study of components regulating photomorphogenesis in diploid wheat. In order to develop genetic and genomic resources for such a study, we constructed genome-wide transcriptomes...
Transcription factor (TF) genes were modified endogenously to include epitope tags for identification of TF protein binding sites by Chromatin Immunoprecipitation (ChIP), followed by high throughput sequencing. We used RNA-sequencing in carbon sources of sucrose, butyrate, and oleate in far-1, far-2, and a double far-1; far-2 mutant to find transcripts...
Transcription factor (TF) genes were modified endogenously to include epitope tags for identification of TF protein binding sites by Chromatin Immunoprecipitation (ChIP), followed by high throughput sequencing. We used RNA-sequencing in carbon sources of sucrose, butyrate, and oleate in far-1, far-2, and a double far-1; far-2 mutant to find transcripts...
Transcription factor (TF) genes were modified endogenously to include epitope tags for identification of TF protein binding sites by Chromatin Immunoprecipitation (ChIP), followed by high throughput sequencing. We used RNA-sequencing in carbon sources of sucrose, butyrate, and oleate in far-1, far-2, and a double far-1; far-2 mutant to find transcripts...
Transcription factor (TF) genes were modified endogenously to include epitope tags for identification of TF protein binding sites by Chromatin Immunoprecipitation (ChIP), followed by high throughput sequencing. We used RNA-sequencing in carbon sources of sucrose, butyrate, and oleate in far-1, far-2, and a double far-1; far-2 mutant to find transcripts...
We inferred the population densities of blue whales (Balaenoptera musculus) and short-beaked
common dolphins (Delphinus delphis) in the Northeast Pacific Ocean as functions
of the water-column’s physical structure by implementing hierarchical models in a Bayesian
framework. This approach allowed us to propagate the uncertainty of the field observations
into the...
Mountain environments are currently among the ecosystems least invaded by non-native
species; however, mountains are increasingly under threat of non-native plant invasion.
The slow pace of exotic plant invasions in mountain ecosystems is likely due to a combination
of low anthropogenic disturbances, low propagule supply, and extreme/steep environmental
gradients. The...
We hypothesized that changes in southeastern Bering Sea foraging conditions for black-legged kittiwakes (Rissa tridactyla)
have caused shifts in habitat use with direct implications for population trends. To test this, we compared at-sea
distribution, breeding performance, and nutritional stress of kittiwakes in three years (2008–2010) at two sites in the...
Stream-dwelling species in the U.S. southern Appalachian Mountains region are particularly vulnerable to climate change and acidification. The objectives of this study were to quantify the spatial extent of contemporary suitable habitat for acid- and thermally sensitive aquatic species and to forecast future habitat loss resulting from expected temperature increases...
Processes that influence habitat selection in landscapes involve the interaction of habitat composition and configuration
and are particularly important for species with complex life cycles. We assessed the relative influence of landscape spatial
processes and local habitat characteristics on patterns in the distribution and abundance of spawning steelhead
(Oncorhynchus mykiss),...
Global change and its associated temperature increase has directly or indirectly changed the distributions of hosts and
pathogens, and has affected host immunity, pathogen virulence and growth rates. This has resulted in increased disease in
natural plant and animal populations worldwide, including scleractinian corals. While the effects of temperature increase...
Bighorn sheep (Ovis canadensis) were not known to live on Tiburón Island, the largest island in the Gulf of California and
Mexico, prior to the surprisingly successful introduction of 20 individuals as a conservation measure in 1975. Today, a stable
island population of ~500 sheep supports limited big game hunting...
Understanding genetic differentiation and speciation processes in marine species with high
dispersal capabilities is challenging. The Chilean dolphin, Cephalorhynchus eutropia, is the
only endemic cetacean of Chile and is found in two different coastal habitats: a northern
habitat with exposed coastlines, bays and estuaries from Valparaíso (33°02' S) to Chiloé...
Management of marine ecosystems increasingly demands comprehensive and quantitative assessments of ocean health,
but lacks a tool to do so. We applied the recently developed Ocean Health Index to assess ocean health in the relatively
data-rich US west coast region. The overall region scored 71 out of 100, with sub-regions...
A number of researchers have attempted to estimate salmonid smolt survival during outmigration through an estuary. However, it is currently unclear how the design of such studies influences the accuracy and precision of survival estimates. In this simulation study we consider four patterns of smolt survival probability in the estuary,...
Virus-infected plants accumulate abundant, 21–24 nucleotide viral siRNAs which are generated by the evolutionary
conserved RNA interference (RNAi) machinery that regulates gene expression and defends against invasive nucleic acids.
Here we show that, similar to RNA viruses, the entire genome sequences of DNA viruses are densely covered with siRNAs in...
A number of researchers have attempted to estimate salmonid smolt survival during outmigration through an estuary. However, it is currently unclear how the design of such studies influences the accuracy and precision of survival estimates. In this simulation study we consider four patterns of smolt survival probability in the estuary,...
New sources of genetic diversity must be incorporated into plant breeding programs if they are to continue increasing grain
yield and quality, and tolerance to abiotic and biotic stresses. Germplasm collections provide a source of genetic and
phenotypic diversity, but characterization of these resources is required to increase their utility...
Climate change is expected to change the distribution of species. For long-lived, sessile
species such as trees, tracking the warming climate depends on seedling colonization of
newly favorable areas. We compare the distribution of seedlings and mature trees for all but
the rarest tree species in California, Oregon and Washington,...
Human activity has been shown to considerably affect the spread of dangerous pests and pathogens worldwide. Therefore,
strict regulations of international trade exist for particularly harmful pathogenic organisms. Phytophthora plurivora, which is
not subject to regulations, is a plant pathogen frequently found on a broad range of host species, both...
Human activity has been shown to considerably affect the spread of dangerous pests and pathogens worldwide. Therefore,
strict regulations of international trade exist for particularly harmful pathogenic organisms. Phytophthora plurivora, which is
not subject to regulations, is a plant pathogen frequently found on a broad range of host species, both...
Phytophthora infestans, the causal agent of late blight disease, has been reported in North America since the mid-nineteenth century. In the United States the lack of or very limited sexual reproduction has resulted in largely clonal populations of P. infestans. In 2010 and 2011, but not in 2012 or 2013,...
Terrestrial lichen biomass is an important indicator of forage availability for caribou in northern regions, and can indicate
vegetation shifts due to climate change, air pollution or changes in vascular plant community structure. Techniques for
estimating lichen biomass have traditionally required destructive harvesting that is painstaking and impractical, so we...
Virus-infected plants accumulate abundant, 21–24 nucleotide viral siRNAs which are generated by the evolutionary
conserved RNA interference (RNAi) machinery that regulates gene expression and defends against invasive nucleic acids.
Here we show that, similar to RNA viruses, the entire genome sequences of DNA viruses are densely covered with siRNAs in...
Understanding genetic differentiation and speciation processes in marine species with high
dispersal capabilities is challenging. The Chilean dolphin, Cephalorhynchus eutropia, is the
only endemic cetacean of Chile and is found in two different coastal habitats: a northern
habitat with exposed coastlines, bays and estuaries from Valparaíso (33°02' S) to Chiloé...
Rapamycin was found to increase (11% to 16%) the lifespan of male and female C57BL/6J mice most likely by reducing the
increase in the hazard for mortality (i.e., the rate of aging) term in the Gompertz mortality analysis. To identify the pathways
that could be responsible for rapamycin’s longevity effect,...
In Kentucky bluegrass (Poa pratensis), Claviceps purpurea, the causal agent of ergot, typically releases ascospores during the early-morning hours, between about midnight and 10:00 A.M., corresponding to time of flowering, when the unfertilized ovaries are most susceptible to infection. During aeromycology studies of C. purpurea in perennial ryegrass (Lolium perenne)...
Nematodes within the Xiphinema americanum species complex are economically important because they vector
nepoviruses which cause considerable damage to a variety of agricultural crops. The taxonomy of X. americanum species
complex is controversial, with the number of putative species being the subject of debate. Accurate phylogenetic
knowledge of this group...
We hypothesized that changes in southeastern Bering Sea foraging conditions for black-legged kittiwakes (Rissa tridactyla)
have caused shifts in habitat use with direct implications for population trends. To test this, we compared at-sea
distribution, breeding performance, and nutritional stress of kittiwakes in three years (2008–2010) at two sites in the...
Stream-dwelling species in the U.S. southern Appalachian Mountains region are particularly vulnerable to climate change and acidification. The objectives of this study were to quantify the spatial extent of contemporary suitable habitat for acid- and thermally sensitive aquatic species and to forecast future habitat loss resulting from expected temperature increases...
In Kentucky bluegrass (Poa pratensis), Claviceps purpurea, the causal agent of ergot, typically releases ascospores during the early-morning hours, between about midnight and 10:00 A.M., corresponding to time of flowering, when the unfertilized ovaries are most susceptible to infection. During aeromycology studies of C. purpurea in perennial ryegrass (Lolium perenne)...
The ascomycete Geosmithia morbida and the walnut twig beetle Pityophthorus juglandis are associated with thousand
cankers disease of Juglans (walnut) and Pterocarya (wingnut). The disease was first reported in the western United States
(USA) on several Juglans species, but has been found more recently in the eastern USA in the...
Grassland and shrubland birds are declining globally due in part to anthropogenic habitat modification. Because population performance of these species is also influenced by non-anthropogenic factors, it is important to incorporate all relevant ecological drivers into demographic models. We used design-based sampling and occupancy models to test relationships of environmental...
Condors and vultures are distinct from most other terrestrial birds because they use extensive soaring flight for their daily
movements. Therefore, assessing resource selection by these avian scavengers requires quantifying the availability of
terrestrial-based habitats, as well as meteorological variables that influence atmospheric conditions necessary for soaring. In
this study,...
Grassland and shrubland birds are declining globally due in part to anthropogenic habitat modification. Because population performance of these species is also influenced by non-anthropogenic factors, it is important to incorporate all relevant ecological drivers into demographic models. We used design-based sampling and occupancy models to test relationships of environmental...
Members of Gram-positive Actinobacteria cause economically important diseases to plants. Within the Rhodococcus genus,
some members can cause growth deformities and persist as pathogens on a wide range of host plants. The current model
predicts that phytopathogenic isolates require a cluster of three loci present on a linear plasmid, with...