Index Catalog // ScholarsArchive@OSU

Supplemental data to "A draft genome and transcriptome of common milkweed (Asclepias syriaca) as resources for evolutionary, ecological, and molecular studies in milkweeds and Apocynaceae"

Creator:: Weitemier, Kevin A.
Abstract:: This dataset contains a draft assembly of the common milkweed (Asclepias syriaca) nuclear genome, linkage group information, and gene family counts for Asclepias and related species. The genome assembly is accompanied by annotation of gene models, repeat models, transfer RNAs, and open reading frames, and mapping information of Asclepias transcripts,...
Resource Type:: Dataset

Dataset used for “The early life stages of California yellowtail (Seriola dorsalis) and white seabass (Atractoscion nobilis) respond to food particle taste more than smell.”

Creator:: Hawkyard, Matt, Langdon, Chris, Stuart, Kevin, and Drawbridge, Mark
Abstract:: This dataset was produced as a result of experiments conducted with simple and alginate complex particles that were used to evaluate feeding in California yellowtail and white seabass post larvae. Retention data was collected from a series of retention trials whereby particles were suspended in seawater for various lengths of...
Resource Type:: Dataset

A catchment-scale assessment of stream temperature response to contemporary forest harvesting in the Oregon Coast Range

Creator:: Kevin Bladon, Nicholas Cook, Jeffery Light, and Catalina Segura
Abstract:: Historical forest harvesting practices were reviewed in the original Alsea Watershed Study where they found increased energy loading to the stream and produced higher stream temperatures. This was an important early research site that led to the development of contemporary forest management practices to protect water quality and fish habitat...
Resource Type:: Dataset
Full Text:: : Phone: Email Address: Web Address: Dr. Kevin Bladon, ORCID: https://orcid.org/0000-0002-4182-6883

Long-term effects of forest harvesting on summer low flow deficiets in the Coast Range of Oregon

Creator:: Segura, Catalina, Bladon, Kevin, Hatten, Jeff, Jones, Julia A., Hale, Cody, Ice, George, and Souder, Jon
Abstract:: We examined long-term changes in daily streamflow associated with forestry practices with two datasets (this one and the original Alsea Streamflow dataset (1972) over a 60-year period (1959–2017) in the Alsea Watershed Study, Oregon Coast Range, Pacific Northwest, USA. In this contemporary period, 2006 to 2017 (12 water years), data...
Resource Type:: Dataset
Full Text:: are in feet (ft), meters (m), cubic feet per second (cfs), or cubic meters per second (cms

A broad-spectrum cloning vector that exists as both an integrated element and a free plasmid in Chlamydia trachomatis

Creator:: Garvin, Lotisha, Vande Voorde, Rebecca, Dickinson, Mary, Carrell, Steven, Hybiske, Kevin, and Rockey, Daniel
Abstract:: Plasmid transformation of chlamydiae has created new opportunities to investigate host–microbe interactions during chlamydial infections; however, there are still limitations. Plasmid transformation requires a replicon derived from the native Chlamydia plasmid, and these transformations are species-specific. We explored the utility of a broad host-range plasmid, pBBR1MCS-4, to transform chlamydiae, with...
Resource Type:: Article
Full Text:: GarvinID 1, Rebecca Vande Voorde1, Mary Dickinson2, Steven Carrell1, Kevin Hybiske2, Daniel RockeyID 1* 1

GrünwaldNiklausBotanyPlantPathologyEphemeralSexualPopulation.pdf

Creator:: Danies, Giovanna, Myers, Kevin, Mideros, Maria F., Grünwald, Niklaus J., and et al.
Abstract:: Phytophthora infestans, the causal agent of late blight disease, has been reported in North America since the mid-nineteenth century. In the United States the lack of or very limited sexual reproduction has resulted in largely clonal populations of P. infestans. In 2010 and 2011, but not in 2012 or 2013,...
Full Text:: in the Northeastern United States and Canada Danies, G., Myers, K., Mideros, M. F., Restrepo, S

Quantitative Trait Loci Associated with the Tocochromanol (Vitamin E) Pathway in Barley

Creator:: Graebner, Ryan C., Wise, Mitchell, Cuesta-Marcos, Alfonso, Geniza, Matthew, Blake, Tom, Blake, Victoria C., Butler, Joshua, Chao, Shiaoman, Hole, David J., Horsley, Rich, Jaiswal, Pankaj, Obert, Don, Smith, Kevin P., Ullrich, Steven, and Hayes, Patrick M.
Abstract:: The Genome-Wide Association Studies approach was used to detect Quantitative Trait Loci associated with tocochromanol concentrations using a panel of 1,466 barley accessions. All major tocochromanol types- α-, β-, δ-, γ-tocopherol and tocotrienol- were assayed. We found 13 single nucleotide polymorphisms associated with the concentration of one or more of...
Resource Type:: Article
Full Text:: , Kevin P. Smith11, Steven Ullrich12, Patrick M. Hayes1* 1 Department of Crop and Soil Science, Oregon

PérezVivianaBiochemistryBiophysicsMiceFedRapamycin.pdf

Creator:: Fok, Wilson C., Chen, Yidong, Bokov, Alex, Zhang, Yiqiang, Salmon, Adam B., Diaz, Vivian, Javors, Martin, Wood, William H., III, Zhang, Yongqing, Becker, Kevin G., Pérez, Viviana I., and Richardson, Arlan
Abstract:: Rapamycin was found to increase (11% to 16%) the lifespan of male and female C57BL/6J mice most likely by reducing the increase in the hazard for mortality (i.e., the rate of aging) term in the Gompertz mortality analysis. To identify the pathways that could be responsible for rapamycin’s longevity effect,...
Full Text:: . Salmon2,7,11, Vivian Diaz2, Martin Javors8, William H. Wood, 3rd9, Yongqing Zhang9, Kevin G. Becker9, Viviana

Alsea watershed study revisited: unpublished temperature datasets from pre-harvest 2006 to 2010

Creator:: Bladon, Kevin, Cook, Nicholas, Light, Jeffery, Segura, Catalina, Skaugset, Arne, Hale, Cody, Leer, David, Garland, Tina, Simmons, Amy, Irving, Alex, Ice, George G., Danehy, Robert, Bousquet, Terry, Cook, Diana, Napack, Jan, Campbell, David, Louch, Jeff, Stednick, John, and Menk, Matthew
Abstract:: These data contain temperature readings from dataloggers launched in Deer Creek, Flynn Creek, and Needle Branch from 2006 to 2010. These loggers were apart of the Alsea Watershed Revisisted Study Revisited articles, but the data was incomplete due to logging gaps, temperature spikes, or other issues. The "Thermistor Functionality" datasets...
Resource Type:: Dataset
Full Text:: , Danehy R , Bousquet T , Cook D , Napack J , Campbell D , Louch J , Stednick J , and Menk M. Alsea

WallaceReoccupancyBreedingTerritories.PDF

Creator:: Wallace, Zachary P., Kennedy, Patricia L., Squires, John R., Oakleaf, Robert J., Olson, Lucretia E., and Dugger, Katie M.
Abstract:: Grassland and shrubland birds are declining globally due in part to anthropogenic habitat modification. Because population performance of these species is also influenced by non-anthropogenic factors, it is important to incorporate all relevant ecological drivers into demographic models. We used design-based sampling and occupancy models to test relationships of environmental...
Full Text:: . Olson3, Katie M. Dugger5 1 Department of Fisheries andWildlife, Oregon State University, Corvallis

ScholarsArchive@OSU

Supplemental data to "A draft genome and transcriptome of common milkweed (Asclepias syriaca) as resources for evolutionary, ecological, and molecular studies in milkweeds and Apocynaceae"

Dataset used for “The early life stages of California yellowtail (Seriola dorsalis) and white seabass (Atractoscion nobilis) respond to food particle taste more than smell.”

A catchment-scale assessment of stream temperature response to contemporary forest harvesting in the Oregon Coast Range

Long-term effects of forest harvesting on summer low flow deficiets in the Coast Range of Oregon

A broad-spectrum cloning vector that exists as both an integrated element and a free plasmid in Chlamydia trachomatis

GrünwaldNiklausBotanyPlantPathologyEphemeralSexualPopulation.pdf

Quantitative Trait Loci Associated with the Tocochromanol (Vitamin E) Pathway in Barley

PérezVivianaBiochemistryBiophysicsMiceFedRapamycin.pdf

Alsea watershed study revisited: unpublished temperature datasets from pre-harvest 2006 to 2010

WallaceReoccupancyBreedingTerritories.PDF

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