Index Catalog // ScholarsArchive@OSU

Arsenic Exposure and Prevalence of the Varicella Zoster Virus in the United States: NHANES (2003-2004 and 2009-2010)

Creator:: Cardenas, Andres, Smit, Ellen, Houseman, E. Andres, Kerkvliet, Nancy I., Bethel, Jeffrey W., and Kile, Molly L.
Abstract:: Background: Arsenic is an immunotoxicant. Clinical reports observe the reactivation of varicella zoster virus (VZV) in people who have recovered from arsenic poisoning and in patients with acute promyelocytic leukemia that have been treated with arsenic trioxide. Objective: We evaluated the association between arsenic and the seroprevalence of VZV IgG...
Resource Type:: Article
Full Text:: Varicella Zoster Virus in the United States: NHANES (2003-2004 and 2009-2010) Arsenic Exposure and

MartinRobertBotanyPlantPathologyDeNovoReconstruction.pdf

Creator:: Seguin, Jonathan, Rajeswaran, Rajendran, Malpica-López, Nachelli, Martin, Robert R., Kasschau, Kristin, Dolja, Valerian V., Otten, Patricia, Farinelli, Laurent, and Pooggin, Mikhail M.
Abstract:: Virus-infected plants accumulate abundant, 21–24 nucleotide viral siRNAs which are generated by the evolutionary conserved RNA interference (RNAi) machinery that regulates gene expression and defends against invasive nucleic acids. Here we show that, similar to RNA viruses, the entire genome sequences of DNA viruses are densely covered with siRNAs in...
Full Text:: , et al. (2012) Virus-derived gene expression and RNA interference vector for grapevine. J Virol 86

MartinRobertBotanyPlantPathologyDeNovoReconstruction_SupportingInformation.zip

Creator:: Seguin, Jonathan, Rajeswaran, Rajendran, Malpica-López, Nachelli, Martin, Robert R., Kasschau, Kristin, Dolja, Valerian V., Otten, Patricia, Farinelli, Laurent, and Pooggin, Mikhail M.
Abstract:: Virus-infected plants accumulate abundant, 21–24 nucleotide viral siRNAs which are generated by the evolutionary conserved RNA interference (RNAi) machinery that regulates gene expression and defends against invasive nucleic acids. Here we show that, similar to RNA viruses, the entire genome sequences of DNA viruses are densely covered with siRNAs in...

De Novo Reconstruction of Consensus Master Genomes of Plant RNA and DNA Viruses from siRNAs

Creator:: Seguin, Jonathan, Rajeswaran, Rajendran, Malpica-López, Nachelli, Martin, Robert R., Kasschau, Kristin, Dolja, Valerian V., Otten, Patricia, Farinelli, Laurent, and Pooggin, Mikhail M.
Abstract:: Virus-infected plants accumulate abundant, 21–24 nucleotide viral siRNAs which are generated by the evolutionary conserved RNA interference (RNAi) machinery that regulates gene expression and defends against invasive nucleic acids. Here we show that, similar to RNA viruses, the entire genome sequences of DNA viruses are densely covered with siRNAs in...
Resource Type:: Article

Comparative Genomics of Plant-Associated Pseudomonas spp.: Insights into Diversity and Inheritance of Traits Involved in Multitrophic Interactions

Creator:: Loper, Joyce E., Hassan, Karl A., Mavrodi, Dmitri V., Davis, Edward W., II, Lim, Chee Kent, Shaffer, Brenda T., Elbourne, Liam D. H., Stockwell, Virginia O., Hartney, Sierra L., Breakwell, Katy, Henkels, Marcella D., Tetu, Sasha G., Rangel, Lorena I., Kidarsa, Teresa A., Wilson, Neil L., van de Mortel, Judith E., Song, Chunxu, Blumhagen, Rachel, Radune, Diana, Hostetler, Jessica B., Brinkac, Lauren M., Durkin, A. Scott, Kluepfel, Daniel A., Wechter, W. Patrick, Anderson, Anne J., Kim, Young Cheol, Pierson, Leland S., III, Pierson, Elizabeth A., Lindow, Steven E., Kobayashi, Donald Y., Raaijmakers, Jos M., Weller, David M., Thomashow, Linda S., Allen, Andrew E., and Paulsen, Ian T.
Abstract:: We provide here a comparative genome analysis of ten strains within the Pseudomonas fluorescens group including seven new genomic sequences. These strains exhibit a diverse spectrum of traits involved in biological control and other multitrophic interactions with plants, microbes, and insects. Multilocus sequence analysis placed the strains in three sub-clades,...
Resource Type:: Article
Full Text:: several secondary metabolite biosynthesis gene clusters. The three genomes in Sub-clade 2 share 38 genes

Comparative Genomics of Plant-Associated Pseudomonas spp.: Insights into Diversity and Inheritance of Traits Involved in Multitrophic Interactions

Creator:: Loper, Joyce E., Hassan, Karl A., Mavrodi, Dmitri V., Davis, Edward W., II, Lim, Chee Kent, Shaffer, Brenda T., Elbourne, Liam D. H., Stockwell, Virginia O., Hartney, Sierra L., Breakwell, Katy, Henkels, Marcella D., Tetu, Sasha G., Rangel, Lorena I., Kidarsa, Teresa A., Wilson, Neil L., van de Mortel, Judith E., Song, Chunxu, Blumhagen, Rachel, Radune, Diana, Hostetler, Jessica B., Brinkac, Lauren M., Durkin, A. Scott, Kluepfel, Daniel A., Wechter, W. Patrick, Anderson, Anne J., Kim, Young Cheol, Pierson, Leland S., III, Pierson, Elizabeth A., Lindow, Steven E., Kobayashi, Donald Y., Raaijmakers, Jos M., Weller, David M., Thomashow, Linda S., Allen, Andrew E., and Paulsen, Ian T.
Abstract:: We provide here a comparative genome analysis of ten strains within the Pseudomonas fluorescens group including seven new genomic sequences. These strains exhibit a diverse spectrum of traits involved in biological control and other multitrophic interactions with plants, microbes, and insects. Multilocus sequence analysis placed the strains in three sub-clades,...
Resource Type:: Article
Full Text:: several secondary metabolite biosynthesis gene clusters. The three genomes in Sub-clade 2 share 38 genes

HoweDanaZoologyUsingMitogenomicNuclear.pdf

Creator:: Zasada, Inga A., Peetz, Amy, Howe, Dana K., Wilhelm, Larry J., Cheam, Daravuth, Denver, Dee R., and Smythe, Ashleigh B.
Abstract:: Nematodes within the Xiphinema americanum species complex are economically important because they vector nepoviruses which cause considerable damage to a variety of agricultural crops. The taxonomy of X. americanum species complex is controversial, with the number of putative species being the subject of debate. Accurate phylogenetic knowledge of this group...
Full Text:: (rDNA) gene was sequenced for all individuals while the internal transcribed spacer region 1 (ITS1) of

Pseudoperonospora cubensis and P. humuli detection using species-specific probes and high definition melt curve analysis

Creator:: Summers, Carly F., Adair, Nanci L., Gent, David H., McGrath, Margaret T., and Smart, Christine D.
Abstract:: Real-time PCR assays using locked nucleic acid (LNA) probes and high resolution melt (HRM) analysis were developed for molecular differentiation of Pseudoperonospora cubensis and P. humuli, causal agents of cucurbit and hop downy mildew, respectively. The assays were based on a previously identified single nucleotide polymorphism (SNP) in the cytochrome...
Resource Type:: Article
Full Text:: cytochrome oxidase subunit II (cox2) gene that differentiates the two species. Sequencing of the same region

SmithKristinaBiochemBiophysThermalStressTriggers.pdf

Creator:: Vidal-Dupiol, Jeremie, Dheilly, Nolwenn M., Rondon, Rodolfo, Smith, Kristina M., Freitag, Michael, and et al.
Abstract:: Global change and its associated temperature increase has directly or indirectly changed the distributions of hosts and pathogens, and has affected host immunity, pathogen virulence and growth rates. This has resulted in increased disease in natural plant and animal populations worldwide, including scleractinian corals. While the effects of temperature increase...
Full Text:: treatments). It included genes subject to down-regulation (e.g. a gene encoding a putative apextrin protein

From fossils to phylogenies

Creator:: Goodwin, Baylee N., Besser, August D., and Ramsey, Stephen A.
Abstract:: The research question address in this study is, “To what extent will the use of hands-on activities for introducing concepts in bioinformatics promote student engagement in after-school STEM club settings?” It is hypothesized that high school students' engagement in hands-on bioinformatics activities promotes their awareness of, and interest in, STEM...
Resource Type:: Learning Object and Presentation
Full Text:: ancestral gene. We call the two genes in such a pair orthologs. Figure 1 is an example of orthologs

ScholarsArchive@OSU

Arsenic Exposure and Prevalence of the Varicella Zoster Virus in the United States: NHANES (2003-2004 and 2009-2010)

MartinRobertBotanyPlantPathologyDeNovoReconstruction.pdf

MartinRobertBotanyPlantPathologyDeNovoReconstruction_SupportingInformation.zip

De Novo Reconstruction of Consensus Master Genomes of Plant RNA and DNA Viruses from siRNAs

Comparative Genomics of Plant-Associated Pseudomonas spp.: Insights into Diversity and Inheritance of Traits Involved in Multitrophic Interactions

Comparative Genomics of Plant-Associated Pseudomonas spp.: Insights into Diversity and Inheritance of Traits Involved in Multitrophic Interactions

HoweDanaZoologyUsingMitogenomicNuclear.pdf

Pseudoperonospora cubensis and P. humuli detection using species-specific probes and high definition melt curve analysis

SmithKristinaBiochemBiophysThermalStressTriggers.pdf

From fossils to phylogenies

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