Index Catalog // ScholarsArchive@OSU

Dataset for predicting the geographic origin of Spanish Cedar (Cedrela odorata L.) based on DNA variation

Creator:: Finch, Kristen N.
Abstract:: The legality of wood products in trade often depends on their geographic origin, creating a need for forensic tools that can verify claims of provenance for wood and wood products. Cedrela odorata L. or Spanish cedar is a target of illegal logging. We developed a 140 SNP Agena™ MassARRAY® assay...
Resource Type:: Dataset

Hinkle Creek Benthic Invertebrate Dataset

Creator:: Gerth, William J., Li, Judith L., Van Driesche, Richard, Sobota, Janel, Murphy, Christina A., Ganio, Lisa, and Skaugset, Arne
Abstract:: This dataset contains records of identified benthic and aquatic emergent invertebrates from pre-timber harvest, post-timber harvest, and reference (no harvest) collection sites in the Hinkle Creek watershed. A variety of fish-bearing tributaries, fishless tributaries, and mainstem creek sites were sampled. Benthic invertebrates were collected using Serber nets and emergent adults...
Resource Type:: Dataset

Re-coding of the Dataset for Status of the European Green Crab, Carcinus maenas, in Oregon and Washington coastal Estuaries in 2019 and 2020

Creator:: Sims, Kimberly, Behrens Yamada, Sylvia, Schooler, Shon, Heller, Renee, Donaldson, Luke, Takacs, Graham T., Randall, Andrea, and Buffington, Chelsey
Abstract:: European green crab, Carcinus maenas, trapped and collected in coastal Oregon and Washington coastal estuaries during the 2019. Data for individual crabs include: estuary, site, date of collection, sex, carapace width, weight, molt stage (color of abdomen), missing limbs, estimated year class, method of collection, and name of collector. This...
Resource Type:: Dataset

Development of Molecular Markers for Determining Continental Origin of Wood from White Oaks (Quercus L. sect. Quercus)

Creator:: Schroeder, Hilke, Cronn, Richard, Yanbaev, Yulai, Jennings, Tara, Mader, Malte, Degen, Bernd, and Kersten, Birgit
Abstract:: To detect and avoid illegal logging of valuable tree species, identification methods for the origin of timber are necessary. We used next-generation sequencing to identify chloroplast genome regions that differentiate the origin of white oaks from the three continents; Asia, Europe, and North America. By using the chloroplast genome of...
Resource Type:: Article
Full Text:: Origin of Wood from White Oaks (Quercus L. sect. Quercus) RESEARCH ARTICLE Development of Molecular

Supplemental data to "Estimating the Genetic Diversity of Pacific salmon and trout using Multi-gene eDNA Metabarcoding"

Creator:: Weitemier, Kevin A.
Abstract:: This dataset contains DNA sequence data of Oncorhynchus species, isolated from environmental DNA (eDNA) from Pacific Northwest streams via microfluidic eDNA metabarcoding and high-throughput (Ilummina) sequencing (samples collected from 2017-09-22 to 2017-10-10). It is accompanied by scripts and commands for data analyses including: sequence denoising, calculation of entropy values by...
Resource Type:: Dataset

Supplemental data to "Casting a broader net: Using microfluidic metagenomics to capture aquatic biodiversity data from diverse taxonomic targets"

Creator:: Hauck, Laura L., Weitemier, Kevin A., Penaluna, Brooke E., Garcia, Tiffany, and Cronn, Richard
Abstract:: This dataset contains the taxonomic classifications of environmental DNA (eDNA) sequences obtained from Fall Creek, Oregon, via microfluidic multiplex PCR (Fluidigm Access Array) and high-throughput sequencing. It is accompanied by electrofishing counts taken at the same time as the eDNA samples. Metadata and R scripts are provided to analyze the...
Resource Type:: Dataset

Warming Ocean Conditions Relate to Increased Trophic Requirements of Threatened and Endangered Salmon

Creator:: Daly, Elizabeth A. and Brodeur, Richard D.
Abstract:: The trophic habits, size and condition of yearling Chinook salmon (Oncorhynchus tshawytscha) caught early in their marine residence were examined during 19 survey years (1981–1985; 1998–2011). Juvenile salmon consumed distinct highly piscivorous diets in cold and warm ocean regimes with major differences between ocean regimes driven by changes in consumption...
Resource Type:: Article
Full Text:: *, Richard D. Brodeur2 1 Cooperative Institution for Marine Resources Studies, Oregon State University

Relationship Between Climatic Factors and Distribution of Pratylenchus spp. in the Dryland Wheat-Production Areas of Eastern Washington

Creator:: Kandel, Shyam L., Smiley, Richard W., Garland-Campbell, Kimberly, Elling, Axel A., Abatzoglou, John T., Huggins, David, Rupp, Richard, and Paulitz, Timothy C.
Abstract:: Field surveys were conducted by collecting soil samples to estimate nematode densities in soil from winter wheat, spring wheat, spring barley, and spring legumes (lentil, chickpea, and pea) fields during 2010 and 2011. Pratylenchus spp. were observed in 60% of sampled fields. However, nematodes were detected in nearly all of...
Resource Type:: Article
Full Text:: Kandel, S. L., Smiley, R. W., Garland-Campbell, K., Elling, A. A., Abatzoglou, J., Huggins, D., Rupp, R

Effect of decay on the chemical composition of wood

Creator:: Forest Products Laboratory (U.S.), Hawley, L. F. (Lee Fred), 1882-1959, Fleck, Louis Carl, and Richards, C. Audrey
Resource Type:: Technical Report
Full Text:: WOO D By L. F. HAWLEY s EFFECT OF DECAY ON THE CHEMICAL COMPOSITION OF WOOD 1 ' 2 ( published in

Submersible observations of deep-reef fishes of Heceta Bank, Oregon

Creator:: Pearcy, William G., Stein, David L., Hixon, Mark Anthony, Pikitch, Ellen K., Barss, William H., and Starr, Richard M.
Abstract:: Rockfishes, Sebastes spp.. were the most numerous and speciose fishes seen during 16 submersible dives from 64 to 305 m depth in the vicinity of Heceta Bank off the coast of Oregon. Dense schools of juvenile rockfishes and large yellowtail rockfish, S. flavidus, were observed only over rocky, high relief...
Resource Type:: Article
Full Text:: Bank, Oregon W. G. Pearcy, D. L. Stein, M. A. Hixon, E. K. Pikitch, W. H. Barss, and R. M. Starr

ScholarsArchive@OSU

Dataset for predicting the geographic origin of Spanish Cedar (Cedrela odorata L.) based on DNA variation

Hinkle Creek Benthic Invertebrate Dataset

Re-coding of the Dataset for Status of the European Green Crab, Carcinus maenas, in Oregon and Washington coastal Estuaries in 2019 and 2020

Development of Molecular Markers for Determining Continental Origin of Wood from White Oaks (Quercus L. sect. Quercus)

Supplemental data to "Estimating the Genetic Diversity of Pacific salmon and trout using Multi-gene eDNA Metabarcoding"

Supplemental data to "Casting a broader net: Using microfluidic metagenomics to capture aquatic biodiversity data from diverse taxonomic targets"

Warming Ocean Conditions Relate to Increased Trophic Requirements of Threatened and Endangered Salmon

Relationship Between Climatic Factors and Distribution of Pratylenchus spp. in the Dryland Wheat-Production Areas of Eastern Washington

Effect of decay on the chemical composition of wood

Submersible observations of deep-reef fishes of Heceta Bank, Oregon

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