Modern scientific and engineering problems often require simulations with a level of resolution difficult to achieve in reasonable amounts of time—even in effectively parallelized programs. Therefore, applications that exploit high performance computing (HPC) systems have become invaluable in academia and industry over the past two decades. Addressing the questions that...
Approximate string matching is commonly used to align genetic sequences (DNA or RNA) to determine their shared
characteristics. Most genetic string matching methods are based on the edit-distance model, which does not provide
alignments for inversions and translocations. Recently, a heuristic called the Walking Tree Method [2, 3] has been...