Riparian vegetation (trees > 10 cm dbh), woody debris (> 10 cm diam, > 1 m long), channel, and landform characteristics were inventoried in mature (80-150 yrs) and old-growth riparian areas (>250 yrs) selected from small tributaries of the Coos and Coquille River basins in southwestern Oregon. Basal area of...
The Willamette River flows north between the Cascade Mountains and Coast Range of western Oregon within a 29,728-km² basin. The fish community in the geologically young basin consists of 36 native species, but introductions of non-native fishes have added 33 additional species for a total of 69 fish species. During...
Research conducted on humpback whitefish Coregonus pidschian in the Copper River Delta, Alaska has revealed a complex life history involving seasonal migrations and the occupation of a variety of freshwater and marine habitats including lacustrine, riverine, estuarine, and marine. Forty-five whitefish were tagged with radio transmitters in 2006 and 2007,...
This study examined the distribution and behavior of adult spring chinook salmon
(Oncorhynchus tshawytscha) related to patterns of stream temperature and physical
habitat at channel unit, reach, and basin-wide spatial scales in both a wilderness stream
and a disturbed stream in the John Day River basin in northeastern Oregon. Thermal...
Species associations of fifteen major commercial groundfish species in the
northeastern Pacific ocean and their spatial and temporal characteristics were studied
using Oregon bottom trawl logbook data, 1987 to 1993. Screening procedures were used
to remove questionable data from the original logbook files, which resulted in the
exclusion of information...
Salmonid populations in the Pacific Northwest are at historic lows and many
populations continue to decline. Previous studies have linked salmonid declines to land
use through degradation of in-stream physical habitat, but few of these studies have taken
geology into consideration. This study relates habitat parameters known to be important...
Recognizing the importance of native black cottonwood-dominated riparian
forests is especially important to preserve, protect, and manage for biodiversity in
the Willamette River Valley. Species composition, structure, and biomass along a
successional gradient from stand initiation to late succession of black cottonwood
(Populus balsamfera L. subsp. trichocarpa (T. & G.)...
I examined hydrological and plant community changes associated with the implementation of a restoration management plan in two riparian meadows located within an agricultural landscape of the central Willamette Valley, Oregon. I established exclosure fencing (a form of passive restoration) in one agricultural field and established fencing and plugged a...
Land use alters the physical and biological structure of stream ecosystems and potentially alters their capacity to process nitrogen (N), an essential nutrient that has nearly doubled in abundance on the biosphere
during the past century from human activities. In this dissertation, I quantified uptake and transformation of nitrate (NO₃⁻)...
I compared hand sampling, two-pass multiple removal sampling, mark-recapture and catchability-based population estimates for the Pacific giant salamander (Dicamptodon tenebrosus) at 22 sites in 11 streams of Cascade Mountains of Oregon. Mark-recapture and catchability-based population estimates were not significantly different (p 0.86). Hand sampling and two-pass multiple removal population estimates...
Understanding food webs is fundamental in conserving endangered species and maintaining healthy ecosystem function, particularly in desert spring systems. We identified dominant energy sources in the Muddy River Warm Springs area, Clark County, NV using carbon and nitrogen natural abundance stable isotope analyses. We examined isotopic signatures of specific macroinvertebrate...
In the Pacific Northwest, regulatory agencies have recently
implemented management strategies for restoration and maintenance of wood
recruitment to streams over time. This allochthonous organic material is a
critical component in the geomorphic and biological structure of forested
streams. Mathematical models are commonly used to evaluate long-term
wood dynamics in...
Visual estimation techniques were used to quantify habitat characteristics,
habitat type (pool, riffle) use and longitudinal distribution of steelhead
(Oncorhynchus mykiss), cutthroat trout (0. clarki), and coho salmon (0. kisutch)
in spring, summer and fall in 8.8 km of Cummins Creek, a basin in the central coast
of Oregon. Fish...
The morphology and ecological importance of habitats associated with the margin of third-order stream channels in the Oregon Cascades were studied in streams in three different riparian types: 450-year-old conifers, 40-year-old alder, and an open, herbaceous-dominated clearcut. Margins, backwaters, and side channels in streams create important habitat for fry of...
Conceptually, the dynamics of wood in streams can be viewed in terms of input and in-channel processes. Input processes are associated with both the riparian (tree fall, bank cutting, windthrow) and upslope forests (mass failures). In-channel processes include log breakage, movement, and decomposition. A mechanistic view of these processes is...
The influence of land use on potential fates of nitrate (NO3-) in stream ecosystems, ranging from denitrification to storage in organic matter, has not been documented extensively. Here, we describe the Pacific Northwest component of Lotic Intersite Nitrogen eXperiment, phase II (LINX II) to examine how land-use setting influences fates...
Neotropical characiform fishes form one of the most diverse freshwater ichthyofauna in the world. Knowledge of evolutionary processes that generated and maintain the immense characiform lineage and morphological diversity is still poorly understood. When did characiform lineages diversify? How have major geological and environmental changes affected diversification? Why are some...
A trait based approach was used to assess impacts of overstory density and thinning on understory vegetation components related to wildlife habitat. The relationship between overstory basal area and understory vegetation for species grouped by traits, such as production of flowers, fleshy-fruit and palatable leaves, was characterized in thinned and...
This thesis examined the influence of fall-spawning coho salmon on the density, growth rate, body condition, and survival to outmigration of juvenile coho salmon rearing in beaver ponds on the Copper River Delta, Alaska. During the fall of 1999 and 2000 fish rearing in ponds that received spawning salmon were...
The species compositions and densities of the littoral and pelagic zooplankton
assemblages in Crater Lake were compared. The littoral and pelagic zooplankton
assemblages of most lakes are typically different due to different habitat conditions in the
two zones. The littoral zone of Crater Lake lacks many of the habitat characteristics,...
Intermittent, headwater streams recently have been recognized as important
components of forest ecosystems and have been provided increased protection by the
Northwest Forest Plan. However, few studies have examined their distribution,
dynamics, and ecological roles, such as habitat for wildlife. My goal was to provide
additional information on the ecology...
The coexistence of multiple predators may have important consequences for the structure and function of communities. Interactions between predators may strongly affect their combined direct and indirect effects on prey populations and lower trophic levels. Predators often have size-structured populations, which may result in intraguild predation characterized by complex trophic...
This study was undertaken to evaluate the spatial and temporal characteristics
of riparian groundwater tables adjacent to beaver ponds. The research was
conducted in two parts; in the first portion a two-dimensional, finite-difference
computer model was developed and utilized to simulate groundwater elevations
through time in pond-adjacent aquifers. Two types...
This study investigated the long-term consequences of timber stand removal on the recruitment, physical characteristics, and
spatial distribution of coarse woody debris in small (second- and third-order) streams of the Oregon Coast Range. A chronosequence of stream-stand systems, ranging from 21- to 140-years since disturbance (YSD), were sampled to determine...
Alcoves in some river systems are cooler than the mainstem of the river and provide thermal refugia for aquatic species. An energy balance and sensitivity analysis on 3 alcoves in the Willamette River, Oregon indicate that alcove size and alcove flux determine the degree to which meteorological conditions affect the...
Relationships between resident cutthroat trout (Oncorhynchus clarkii clarkii) and six hydrologic indices were investigated using correlation analysis in two experimental headwater catchments in the foothills of the Cascade Mountains of western Oregon. This investigation was to determine if characteristics of discharge explained inter-annual variability in trout abundance. Eight years of...
Alfalfa sprouts have been implicated in several salmonellosis outbreaks in recent years. Electrolysis of a NaCl solution generates, in the anode side of a two-chamber electrolyzer, acidic electrolyzed oxidizing (EO) water which contains Cl₂, HOC1, dissolved oxygen, and it is characterized by a low pH and a high oxidation reduction...
Precise chemical analyses of geological samples continue to play an
important role in geochemical research. During the past 10 years atomic
absorption spectrophotometry has become increasingly prominent as an
accurate and relatively simple analytical technique. The marine geochemistry
group at OST7 has used a Jarrel-Ash 82-820 atomic absorption
spectrophotometer (AAS)...
The ongoing worldwide loss of biodiversity has been described as a "biodiversity crisis," "the Anthropocene defaunation," and alternatively "an extinction spasm." More recently, many scientists have come to the conclusion that we are witnesses to Earth's sixth major mass extinction event, which has the potential to fundamentally alter basic ecological...
New approaches are needed to quantify and understand spatial patterns of stream fishes and their environment. Concepts in riverine ecology emphasize the importance of thermal zones and gradual longitudinal changes in physical habitat and biota, but little is known about spatial variability within the river continuum. I present a conceptual...
I examined the biomechanical factors that influence the sizes of intertidal macroalgae by studying a population of Fucus gardneri at Fogarty Creek Point, OR. I constructed a mathematical model to predict optimal sizes and probabilities of survival for Fucus under conditions of high and low wave exposure. Predicted optimal sizes...
Most recent research on stream amphibians in the Pacific Northwest has focused on associations with reach-level or stand-level environmental features. Little is known about landscape-level distributions of these species or landscape-level aspects of their life-histories. I used a watershed-wide sample and logistic regression to develop models and maps of probability...
Irrigated agriculture constitutes the greatest consumptive water use globally, so that irrigation efficiency measures are an important part of global efforts to best utilize this limited resource. However, greater irrigation efficiency must be achieved while simultaneously maintaining or increasing crop yields and farming profitability. Incremental water use decisions are made...
Predator-prey interactions have historically been studied to explain patterns of organization observed in populations and communities. They have also been important in understanding the evolution of antipredator responses in prey and counterstrategies in predators. Despite the breadth of knowledge that exists for heterospecific interactions, relatively few studies have investigated the...
The application of modern land management practices beginning at the turn of the 20th century is widely believed to have dramatically transformed forest landscapes of the inland Pacific Northwest. Restoring historical conditions to make forests resilient to future climate and disturbance regimes is a major goal of federal forest managers....
Responses of juvenile steelhead trout to changes in stream habitat resulting from an instream habitat rehabilitation project in Meadow Creek, Oregon were measured from 1991 through 1992 and compared to pre-treatment data from 1987 through 1990. Sixty nine pool-forming, and 59 channel-stabilizing log structures were constructed by the U.S. Forest...
Culverts and road crossings potentially create barriers that impede or prevent
movement and migration of all life stages of resident and anadromous fish. There
have been very few studies of juvenile salmonid movements through retrofitted
(baffled) culverts in the field. Two separate studies were conducted to assess
juvenile cutthroat trout...
Response of aquatic vertebrates to increased pool habitat complexity due to abundance of large wood was evaluated experimentally in three streams in the Cascade Mountains of Oregon. No difference in aquatic vertebrate density was detected among treatments, though there was a trend of increasing aquatic vertebrate density with increasing large...
This study examined channel structure and position and riparian
vegetation and land use on the upper 70 km of the McKenzie River, Oregon in
the 1940s, compared the 1940s conditions to present conditions, and explored
the processes driving change in this system and the implications for aquatic
habitat. The hydrologic...
An experimental study was performed in which an ammonia-water solution was desorbed within a branching fractal-like microchannel array. The solution entered in the center of a disk, and flowed out radially until discharging in to a gravity-driven separation chamber. Heat was added to the ammonia-water through a thin wall, above...
Agronomic research documents a strong correlation
between the level of irrigation water applied and the level
of farm chemicals leached into water bodies. Consequently,
policies that cause farmers to alter irrigation water
management practices are likely to influence water quality.
Water markets are a potentially attractive method of
addressing agriculturally...
Introduction The Willamette River Flow Project The Nature Conservancy (TNC) and the U. S. Army Corps of Engineers (USACE) are collaborating on a project to determine environmental flow requirements for the Willamette River and its tributaries and to design and test alternative flow releases from the dams that can meet...
A new method is introduced for incorporating bathymetric uncertainty into predictions of nearshore and river flows (i.e., unstratified flows primarily forced by pressure and radiation stress gradients). The method involves the use of the ensemble Kalman filter (EnKF) as a parameter estimation scheme, where the parameter to be estimated is...
Upper Klamath Lake in south central Oregon annually experiences intense
blooms of cyanobacteria, primarily Aphanizomenon flos-aquae. Domination of the
lake phytoplankton community by this single species regularly results in drastic
changes to water quality. Photosynthetic activity of such extensive populations can
result in pH over 10. Blooms typically expire in...
Sulforaphane is an isothiocyanate derived from cruciferous vegetables and has been under investigation as a cancer chemopreventive agent for over two decades. The compound is well tolerated and has been shown to slow cancer progression in several different pre-clinical models of carcinogenesis, such as of the lung, breast and colon....