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- Creator:
- Torto-Alalibo, Trudy, Purwantini, Endang, Lomax, Jane, Setubal, João C., Mukhopadhyay, Biswarup, and Tyler, Brett M.
- Abstract:
- Dramatic increases in research in the area of microbial biofuel production coupled with high-throughput data generation on bioenergy-related microbes has led to a deluge of information in the scientific literature and in databases. Consolidating this information and making it easily accessible requires a unified vocabulary. The Gene Ontology (GO) fulfills...
- Resource Type:
- Article
- Full Text:
- , João C. Setubal 2,4 , Biswarup Mukhopadhyay1,2,5 and Brett M. Tyler 2,6* 1 Department of Biochemistry
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- Creator:
- Purwantini, Endang, Torto-Alalibo, Trudy, Lomax, Jane, Setubal, João C., Tyler, Brett M., and Mukhopadhyay, Biswarup
- Abstract:
- Methane (CH₄) is a valuable fuel, constituting 70–95% of natural gas, and a potent greenhouse gas. Release of CH₄ into the atmosphere contributes to climate change. Biological CH₄ production or methanogenesis is mostly performed by methanogens, a group of strictly anaerobic archaea. The direct substrates for methanogenesis are H₂ plus...
- Full Text:
- Gene Ontology Purwantini, E., Torto-Alalibo, T., Lomax, J., Setubal, J. C., Tyler, B. M
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- Creator:
- Wilson, Mandy L., Cai, Yizhi, Hanlon, Regina, Taylor, Samantha, Chevreux, Bastien, Setubal, João C., Tyler, Brett M., and Peccoud, Jean
- Abstract:
- Gene synthesis attempts to assemble user-defined DNA sequences with base-level precision. Verifying the sequences of construction intermediates and the final product of a gene synthesis project is a critical part of the workflow, yet one that has received the least attention. Sequence validation is equally important for other kinds of...
- Resource Type:
- Article
- Full Text:
- Throughput Biology Center, Baltimore, MD 21205, USA. João C. Setubal, Department of Biochemistry, University
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- Creator:
- Purwantini, Endang, Torto-Alalibo, Trudy, Lomax, Jane, Setubal, João C., Tyler, Brett M., and Mukhopadhyay, Biswarup
- Abstract:
- Methane (CH₄) is a valuable fuel, constituting 70–95% of natural gas, and a potent greenhouse gas. Release of CH₄ into the atmosphere contributes to climate change. Biological CH₄ production or methanogenesis is mostly performed by methanogens, a group of strictly anaerobic archaea. The direct substrates for methanogenesis are H₂ plus...
- Full Text:
- GO:0043794 (F)|GO:2001127 (P)|GO:0009326 (C) PMID:3801411|PMID:3531194 IDA F420-dependent Formate
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- Creator:
- Purwantini, Endang, Torto-Alalibo, Trudy, Lomax, Jane, Setubal, João C., Tyler, Brett M., and Mukhopadhyay, Biswarup
- Abstract:
- Methane (CH₄) is a valuable fuel, constituting 70–95% of natural gas, and a potent greenhouse gas. Release of CH₄ into the atmosphere contributes to climate change. Biological CH₄ production or methanogenesis is mostly performed by methanogens, a group of strictly anaerobic archaea. The direct substrates for methanogenesis are H₂ plus...
- Resource Type:
- Article
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- Creator:
- Dias, Joao Ferreira and Guillotreau, Patrice
- Abstract:
- It has been recently reported that the major canned fish found in international trade –tuna- was first canned in 1903 in southern California. This US-centric view regrettably omits the important foreign trade of canned fish products borne as far back as the late 1820s in Europe, birth place of this...
- Resource Type:
- Research Paper
- Full Text:
- OF CANNED FISH João Ferreira Dias, ADETTI, ISCTE, Lisbon, Portugal Patrice Guillotreau, LEN
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- Creator:
- deCarvalho, Joao O. M.
- Abstract:
- The main purpose of this research is 1. To analyze the terrain/climate of Cape Verde, with emphasis on cloud cover, and its effect upon satellite image acquisition. 2. To use a methodology that allows the use of AutoCAD to map these clouds effect in image acquisition to permit viewing whatever...
- Resource Type:
- Capstone Project
- Full Text:
- CAPE VERIDE by JOAO 0. M. de CAR VALHO A Research Paper submitted to Oregon State University In
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- Creator:
- Asche, Frank, Menezes, Rui, and Dias, Joao Ferreira
- Abstract:
- The extent to which demand and supply shocks are transmitted in the value chain is an important topic. As many value chains cross international borders exchange rate pass through is an important element in this context. In this paper a multivariate system that allow us to test different hypothesis with...
- Resource Type:
- Research Paper
- Full Text:
- Economics Rui Menezes Instituto Superior de Ciências do Trabalho e da Empresa (ISCTE/ADETTI) Joaõ Ferreira
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- Creator:
- Renaud, Erica N. C., Lammerts van Bueren, Edith T., Myers, James R., Joāo Paulo, Maria, van Eeuwijk, Fred A., Zhu, Ning, and Juvik, John A.
- Abstract:
- Organic agriculture requires cultivars that can adapt to organic crop management systems without the use of synthetic pesticides as well as genotypes with improved nutritional value. The aim of this study encompassing 16 experiments was to compare 23 broccoli cultivars for the content of phytochemicals associated with health promotion grown...
- Resource Type:
- Article
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- Creator:
- de Moura, Yhasmin Mendes, Hilker, Thomas, Lyapustin, Alexei I., Galvão, Lênio Soares, dos Santos, João Roberto, Anderson, Liana O., Resende de Sousa, Célio Helder, and Arai, Egidio
- Abstract:
- Seasonality and drought in Amazon rainforests have been controversially discussed in the literature, partially due to a limited ability of current remote sensing techniques to detect its impacts on tropical vegetation. We use a multi-angle remote sensing approach to determine changes in vegetation structure from differences in directional scattering (anisotropy)...
- Resource Type:
- Article
- Full Text:
- Moura a,⁎, Thomas Hilker b, Alexei I. Lyapustin c, Lênio Soares Galvão a, João Roberto dos Santos a
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- Creator:
- Braga, Marcos M., Silva, Emerson S., Rico, Eduardo P., Pettenuzzo, Leticia F., Oliveira, Diogo L., Dias, Renato D., Rocha, João B. T., Calcagnotto, Maria Elisa, Tanguay, Robert L., Souza, Diogo O., and Rosemberg, Denis B.
- Abstract:
- The study of the effects of diethyldithiocarbamate (DEDTC) in some diseases is in focus for many years. However, DEDTC is a metal chelator that can present neurotoxicity as side effects. Here we investigate the effect of DEDTC on brain Zinc (Zn) content and behavior. To address this issue we used...
- Resource Type:
- Article
- Full Text:
- Diogo L. Oliveira, a,d Renato D. Dias, a,b João B. T. Rocha, c Maria Elisa Calcagnotto, a,b
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- Creator:
- Hsu, Tai C.
- Abstract:
- Approximate string matching is commonly used to align genetic sequences (DNA or RNA) to determine their shared characteristics. In contrast with the standard dynamic programming methods which use local edit distance models, the Walking Tree heuristic method was created to handle non-local changes, e.g., translocations, inversions, and duplications, altogether and...
- Resource Type:
- Dissertation
- Full Text:
- AN ABSTRACT OF THE DISSERTATION OF Tai C. Hsu for the degree of
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- Creator:
- Pankow, Rebecca C.
- Abstract:
- Modern technology has enabled the advancement of biological research through the use of powerful machines and computers as well as innovative computer programs. Advances in sequencing technology and software enable us to make de novo assemblies of organism genomes, and the development of specialized computer programs can automate routine but...
- Resource Type:
- Honors College Thesis
- Full Text:
- AN ABSTRACT OF THE THESIS OF Rebecca C. Pankow for
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- Creator:
- Donahue, Elizabeth C.
- Abstract:
- In the United States, the utilization of digital media has assumed an omnipresent status and has altered the manner in which we communicate, conduct business, and create art and music. However, it has been demonstrated that art therapy lags behind the current culture of prolific use of digital media. To...
- Resource Type:
- Dissertation
- Full Text:
- exploration of the current incorporation of digital media into the field of art therapy, (c) a discussion of
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- Creator:
- Chescheir, Stuart C.
- Abstract:
- The yeast Brettanomyces bruxellensis is the most important wines spoilage yeast encountered during winemaking as it can survive in wine for long periods, requires minimal nutrients for growth, and can be difficult to control. Brettanomyces produces two major spoilage products, the volatile phenols 4-ethylphenol (Band-Aid, medicinal smell) and 4-ethylguaiacol (smoke,...
- Resource Type:
- Masters Thesis
- Full Text:
- OF Stuart C. Chescheir for the degree of Master of Science in Food Science and Technology
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- Creator:
- Bingham, Bruce C.
- Abstract:
- Manuscript I: The removal of residual casting material from gating has traditionally been performed by abrasive grinding techniques. However, high amounts of belt wear can occur when working with high strength alloys, especially those typically seen in the aerospace industry. An alternative machining process called electrochemical machining (ECM) uses electrolysis...
- Resource Type:
- Masters Thesis
- Full Text:
- AN ABSTRACT OF THE THESIS OF Bruce C
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- Creator:
- Quandt, C. Alisha
- Abstract:
- Fungi in the genus Tolypocladium are diverse in their host associations, but the predominant ecologies include parasites of the ectomycorrhizal genus Elaphomyces and pathogens of insects. The aim of this dissertation research is to examine the evolution of these fungi and their host associations. To accomplish this several lines of...
- Resource Type:
- Dissertation
- Full Text:
- the study. Walter Gams, João P. M. Araújo, Sayaka Ban, Harry C. Evans, David Hughes, Richard
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- Creator:
- Chiplunkar, Sanket S.
- Abstract:
- Mycobacterium avium subsp. hominissuis (MAH) belongs to the most-clinically significant non-tuberculous mycobacterial (NTM) pathogens with constant increase in disease prevalence, mainly in several industrialized western countries where tuberculosis is less prevalent. Upon entry into the alveolar space, MAH is engulfed by resident-macrophages, where the pathogen adapts to the hostile phagosomal...
- Resource Type:
- Masters Thesis
- Full Text:
- and catalase (OADC, Hardy Diagnostics, Santa Maria, CA) at 37º C, until mid-log phase (which is 7-8
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- Creator:
- Liu, Jialin
- Abstract:
- Sensor system plays an important role in connecting everything including human body to the electrical information systems that we have built and that we are going to build, to make the world more intelligent and efficient. One of the key propulsive forces behind these emerging techniques is CMOS scaling that...
- Resource Type:
- Dissertation
- Full Text:
- express my gratitude to my thesis examination committee members: Professor Gabor C. Temes, Professor
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- Creator:
- Gardner, Toby A., Ferreira, Joice, Barlow, Jos, Lees, Alexander C., Parry, Luke, Guimarães Vieira, Ima Célia, Berenguer, Erika, Abramovay, Ricardo, Aleixo, Alexandre, Andretti, Christian, Aragão, Luiz E. O. C., Araujo, Ivanei, Bardgett, Richard D., Batistella, Mateus, Begotti, Rodrigo Anzolin, Beldini, Troy, de Blas, Driss Ezzine, Braga, Rodrigo Fagundes, Braga, Danielle de Lima, de Brito, Janaina Gomes, de Ávila, Williams Souza, de Camargo, Plinio Barbosa, dos Santos, Fabiane Campos, de Oliveira, Vívian Campos, Nunes Cordeiro, Amanda Cardoso, Cardoso, Thiago Moreira, de Carvalho, Deborah Reis, Castelani, Sergio Andre, Mario Chaul, Julio Cezar, Cerri, Carlos Eduardo, Costa, Francisco de Assis, Furtado da Costa, Carla Daniele, Coudel, Emilie, Coutinho, Alexandre Camargo, Cunha, Denis, D'Antona, Alvaro, Dezincourt, Joelma, Dias-Silva, Karina, Durigan, Mariana, Dalla Mora Esquerdo, Julio Cesar, Feres, Jose, de Barros Ferraz, Silvio Frosini, de Melo Ferreira, Amanda Estefania, Fiorini, Ana Carolina, Flores da Silva, Lenise Vargas, Frazao, Fabio Soares, Garrett, Rachel, Gomes, Alessandra dos Santos, Goncalves, Karoline da Silva, Guerrero, Jose Benito, Hamada, Neusa, Hughes, Robert M., Igliori, Danilo Carmago, Jesus, Ederson da Conceicao, Juen, Leandro, Junior, Miercio, de Oliveira Junior, Jose Max Barbosa, de Oliveira Junior, Raimundo Cosme, Souza Junior, Carlos, Kaufmann, Phil, Korasaki, Vanesca, Leal, Cecilia Gontijo, Leitao, Rafael, Lima, Natalia, Lopes Almeida, Maria de Fatima, Lourival, Reinaldo, Louzada, Julio, Mac Nally, Ralph, Marchand, Sebastien, Maues, Marcia Motta, Moreira, Fatima M. S., Morsello, Carla, Moura, Nargila, Nessimian, Jorge, Nunes, Samia, Fonseca Oliveira, Victor Hugo, Pardini, Renata, Pereira, Heloisa Correia, Pompeu, Paulo Santos, Ribas, Carla Rodrigues, Rossetti, Felipe, Schmidt, Fernando Augusto, da Silva, Rodrigo, Viana Martins da Silva, Regina Celia, Morello Ramalho da Silva, Thiago Fonseca, Silveira, Juliana, Siqueira, Joao Victor, de Carvalho, Teotonio Soares, Solar, Ricardo R. C., Holanda Tancredi, Nicola Saverio, Thomson, James R., Torres, Patricia Carignano, Vaz-de-Mello, Fernando Zagury, Stulpen Veiga, Ruan Carlo, Venturieri, Adriano, Viana, Cecilia, Weinhold, Diana, Zanetti, Ronald, and Zuanon, Jansen
- Abstract:
- Science has a critical role to play in guiding more sustainable development trajectories. Here, we present the Sustainable Amazon Network (Rede Amazonia Sustentavel, RAS): a multidisciplinary research initiative involving more than 30 partner organizations working to assess both social and ecological dimensions of land-use sustainability in eastern Brazilian Amazonia. The...
- Resource Type:
- Article
- Full Text:
- , Ruan João Victor Siqueira, Teotônio Soares de Carvalho, Ricardo R. C. Solar, Nicola Savério Holanda
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- Creator:
- Wagner, Fabien H., Hérault, Bruno, Bonal, Damien, Stahl, Clément, Anderson, Liana O., Baker, Timothy R., Becker, Gabriel Sebastian, Beeckman, Hans, Boanerges Souza, Danilo, Botosso, Paulo Cesar, Bowman, David M. J. S., Bräuning, Achim, Brede, Benjamin, Brown, Foster Irving, Camarero, Jesus Julio, Camargo, Plínio Barbosa, Cardoso, Fernanda C. G., Carvalho, Fabrício Alvim, Castro, Wendeson, Chagas, Rubens Koloski, Chave, Jérome, Chidumayo, Emmanuel N., Clark, Deborah A., Costa, Flavia Regina Capellotto, Couralet, Camille, da Silva Mauricio, Paulo Henrique, Dalitz, Helmut, de Castro, Vinicius Resende, de Freitas Milani, Jaçanan Eloisa, de Oliveira, Edilson Consuelo, de Souza Arruda, Luciano, Devineau, Jean-Louis, Drew, David M., Dünisch, Oliver, Durigan, Giselda, Elifuraha, Elisha, Fedele, Marcio, Ferreira Fedele, Ligia, Figueiredo Filho, Afonso, Finger, César Augusto Guimarães, Franco, Augusto César, Freitas Júnior, João Lima, Galvão, Franklin, Gebrekirstos, Aster, Gliniars, Robert, Graça, Paulo Maurício Lima de Alencastro, Griffiths, Anthony D., Grogan, James, Guan, Kaiyu, Homeier, Jürgen, Kanieski, Maria Raquel, Kho, Lip Khoon, Koenig, Jennifer, Kohler, Sintia Valerio, Krepkowski, Julia, Lemos-Filho, José Pires, Lieberman, Diana, Lieberman, Milton Eugene, Lisi, Claudio Sergio, Longhi Santos, Tomaz, López Ayala, José Luis, Maeda, Eduardo Eijji, Malhi, Yadvinder, Maria, Vivian R. B., Marques, Marcia C. M., Marques, Renato, Maza Chamba, Hector, Mbwambo, Lawrence, Melgaço, Karina Liana Lisboa, Mendivelso, Hooz Angela, Murphy, Brett P., O'Brien, Joseph J., Oberbauer, Steven F., Okada, Naoki, Pélissier, Raphaël, Prior, Lynda D., Roig, Fidel Alejandro, Ross, Michael, Rossatto, Davi Rodrigo, Rossi, Vivien, Rowland, Lucy, Rutishauser, Ervan, Santana, Hellen, Schulze, Mark, Selhorst, Diogo, Silva, Williamar Rodrigues, Silveira, Marcos, Spannl, Susanne, Swaine, Michael D., Toledo, José Julio, Toledo, Marcos Miranda, Toledo, Marisol, Toma, Takeshi, Tomazello Filho, Mario, Valdez Hernández, Juan Ignacio, Verbesselt, Jan, Vieira, Simone Aparecida, Vincent, Grégoire, Volkmer de Castilho, Carolina, Volland, Franziska, Worbes, Martin, Zanon, Magda Lea Bolzan, and Aragão, Luiz E. O. C.
- Abstract:
- The seasonal climate drivers of the carbon cycle in tropical forests remain poorly known, although these forests account for more carbon assimilation and storage than any other terrestrial ecosystem. Based on a unique combination of seasonal pan-tropical data sets from 89 experimental sites (68 include aboveground wood productivity measurements and...
- Full Text:
- Camargo18, Fernanda C. G. Cardoso19, Fabrício Alvim Carvalho20, Wendeson Castro21, Rubens Koloski Chagas22
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- Creator:
- Wagner, Fabien H., Hérault, Bruno, Bonal, Damien, Stahl, Clément, Anderson, Liana O., Baker, Timothy R., Becker, Gabriel Sebastian, Beeckman, Hans, Boanerges Souza, Danilo, Botosso, Paulo Cesar, Bowman, David M. J. S., Bräuning, Achim, Brede, Benjamin, Brown, Foster Irving, Camarero, Jesus Julio, Camargo, Plínio Barbosa, Cardoso, Fernanda C. G., Carvalho, Fabrício Alvim, Castro, Wendeson, Chagas, Rubens Koloski, Chave, Jérome, Chidumayo, Emmanuel N., Clark, Deborah A., Costa, Flavia Regina Capellotto, Couralet, Camille, da Silva Mauricio, Paulo Henrique, Dalitz, Helmut, de Castro, Vinicius Resende, de Freitas Milani, Jaçanan Eloisa, de Oliveira, Edilson Consuelo, de Souza Arruda, Luciano, Devineau, Jean-Louis, Drew, David M., Dünisch, Oliver, Durigan, Giselda, Elifuraha, Elisha, Fedele, Marcio, Ferreira Fedele, Ligia, Figueiredo Filho, Afonso, Finger, César Augusto Guimarães, Franco, Augusto César, Freitas Júnior, João Lima, Galvão, Franklin, Gebrekirstos, Aster, Gliniars, Robert, Graça, Paulo Maurício Lima de Alencastro, Griffiths, Anthony D., Grogan, James, Guan, Kaiyu, Homeier, Jürgen, Kanieski, Maria Raquel, Kho, Lip Khoon, Koenig, Jennifer, Kohler, Sintia Valerio, Krepkowski, Julia, Lemos-Filho, José Pires, Lieberman, Diana, Lieberman, Milton Eugene, Lisi, Claudio Sergio, Longhi Santos, Tomaz, López Ayala, José Luis, Maeda, Eduardo Eijji, Malhi, Yadvinder, Maria, Vivian R. B., Marques, Marcia C. M., Marques, Renato, Maza Chamba, Hector, Mbwambo, Lawrence, Melgaço, Karina Liana Lisboa, Mendivelso, Hooz Angela, Murphy, Brett P., O'Brien, Joseph J., Oberbauer, Steven F., Okada, Naoki, Pélissier, Raphaël, Prior, Lynda D., Roig, Fidel Alejandro, Ross, Michael, Rossatto, Davi Rodrigo, Rossi, Vivien, Rowland, Lucy, Rutishauser, Ervan, Santana, Hellen, Schulze, Mark, Selhorst, Diogo, Silva, Williamar Rodrigues, Silveira, Marcos, Spannl, Susanne, Swaine, Michael D., Toledo, José Julio, Toledo, Marcos Miranda, Toledo, Marisol, Toma, Takeshi, Tomazello Filho, Mario, Valdez Hernández, Juan Ignacio, Verbesselt, Jan, Vieira, Simone Aparecida, Vincent, Grégoire, Volkmer de Castilho, Carolina, Volland, Franziska, Worbes, Martin, Zanon, Magda Lea Bolzan, and Aragão, Luiz E. O. C.
- Abstract:
- The seasonal climate drivers of the carbon cycle in tropical forests remain poorly known, although these forests account for more carbon assimilation and storage than any other terrestrial ecosystem. Based on a unique combination of seasonal pan-tropical data sets from 89 experimental sites (68 include aboveground wood productivity measurements and...
- Full Text:
- S8. Intercepts and slopes of the fitted linear models to explain seasonal EVI of Fig. 5 (b) and (c
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- Creator:
- Wagner, Fabien H., Hérault, Bruno, Bonal, Damien, Stahl, Clément, Anderson, Liana O., Baker, Timothy R., Becker, Gabriel Sebastian, Beeckman, Hans, Boanerges Souza, Danilo, Botosso, Paulo Cesar, Bowman, David M. J. S., Bräuning, Achim, Brede, Benjamin, Brown, Foster Irving, Camarero, Jesus Julio, Camargo, Plínio Barbosa, Cardoso, Fernanda C. G., Carvalho, Fabrício Alvim, Castro, Wendeson, Chagas, Rubens Koloski, Chave, Jérome, Chidumayo, Emmanuel N., Clark, Deborah A., Costa, Flavia Regina Capellotto, Couralet, Camille, da Silva Mauricio, Paulo Henrique, Dalitz, Helmut, de Castro, Vinicius Resende, de Freitas Milani, Jaçanan Eloisa, de Oliveira, Edilson Consuelo, de Souza Arruda, Luciano, Devineau, Jean-Louis, Drew, David M., Dünisch, Oliver, Durigan, Giselda, Elifuraha, Elisha, Fedele, Marcio, Ferreira Fedele, Ligia, Figueiredo Filho, Afonso, Finger, César Augusto Guimarães, Franco, Augusto César, Freitas Júnior, João Lima, Galvão, Franklin, Gebrekirstos, Aster, Gliniars, Robert, Graça, Paulo Maurício Lima de Alencastro, Griffiths, Anthony D., Grogan, James, Guan, Kaiyu, Homeier, Jürgen, Kanieski, Maria Raquel, Kho, Lip Khoon, Koenig, Jennifer, Kohler, Sintia Valerio, Krepkowski, Julia, Lemos-Filho, José Pires, Lieberman, Diana, Lieberman, Milton Eugene, Lisi, Claudio Sergio, Longhi Santos, Tomaz, López Ayala, José Luis, Maeda, Eduardo Eijji, Malhi, Yadvinder, Maria, Vivian R. B., Marques, Marcia C. M., Marques, Renato, Maza Chamba, Hector, Mbwambo, Lawrence, Melgaço, Karina Liana Lisboa, Mendivelso, Hooz Angela, Murphy, Brett P., O'Brien, Joseph J., Oberbauer, Steven F., Okada, Naoki, Pélissier, Raphaël, Prior, Lynda D., Roig, Fidel Alejandro, Ross, Michael, Rossatto, Davi Rodrigo, Rossi, Vivien, Rowland, Lucy, Rutishauser, Ervan, Santana, Hellen, Schulze, Mark, Selhorst, Diogo, Silva, Williamar Rodrigues, Silveira, Marcos, Spannl, Susanne, Swaine, Michael D., Toledo, José Julio, Toledo, Marcos Miranda, Toledo, Marisol, Toma, Takeshi, Tomazello Filho, Mario, Valdez Hernández, Juan Ignacio, Verbesselt, Jan, Vieira, Simone Aparecida, Vincent, Grégoire, Volkmer de Castilho, Carolina, Volland, Franziska, Worbes, Martin, Zanon, Magda Lea Bolzan, and Aragão, Luiz E. O. C.
- Abstract:
- The seasonal climate drivers of the carbon cycle in tropical forests remain poorly known, although these forests account for more carbon assimilation and storage than any other terrestrial ecosystem. Based on a unique combination of seasonal pan-tropical data sets from 89 experimental sites (68 include aboveground wood productivity measurements and...
- Resource Type:
- Article
-
- Creator:
- Meyers, Stephen C., Liston, Aaron, and Meinke, Robert
- Abstract:
- Limnanthes floccosa ssp. floccosa and L. floccosa ssp. grandiflora are two of five subspecies within Limnanthes floccosa endemic to vernal pools in southern Oregon and northern California. Three seasons of monitoring natural populations have quantified that L. floccosa ssp. grandiflora is always found growing sympatrically with L. floccosa ssp. floccosa...
- Resource Type:
- Article
- Full Text:
- Speciation within Limnanthes (Limnanthaceae) Stephen C. Meyers*, Aaron Liston, Robert Meinke Department of
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- Creator:
- Oregon State University. Dept. of Computer Science, Hsu, Tai C., and Cull, Paul, 1943-
- Abstract:
- The meaning of biological sequences is a central problem of modern biology. Although string matching is well understood in the edit-distance model, biological strings with transpositions and inversions violate this model's assumptions. To align biologically reasonable strings, we proposed the Walking Tree Method [4,5,6,7,8], an approximate string alignment method that...
- Resource Type:
- Research Paper
- Full Text:
- ; max_pos = 18914; |P| = 8592; |T| = 14942; c = 2; IZ = 9; updates = 2907 Pattern: (in the middle) X. laevis
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- Creator:
- Ruder, Bonnie J.
- Abstract:
- Obstetric fistula is estimated to affect 1–2 million women worldwide, predominantly in low-resource countries in sub-Saharan Africa and southeast Asia. The primary intervention for obstetric fistula is surgery, which is described as a relatively simple surgical procedure with an extremely high psychosocial and economic benefit relative to cost. Research addressing...
- Resource Type:
- Dissertation
- Full Text:
- ………………………………………….158 Appendix B IRB Approved Participant Consent Script ………………… ..160 Appendix C IRB
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- Creator:
- Oregon State University. Dept. of Computer Science, Cull, Paul, 1943-, and Hsu, Tai C.
- Abstract:
- Approximate string matching is commonly used to align genetic sequences (DNA or RNA) to determine their shared characteristics. Most genetic string matching methods are based on the edit-distance model, which does not provide alignments for inversions and translocations. Recently, a heuristic called the Walking Tree Method [2, 3] has been...
- Resource Type:
- Research Paper
- Full Text:
- MATCH(Pi, Tj) = c if Pi = Tj MATCH(Pi, Tj) = 0 if Pi ≠ Tj For many of our examples we use c = 2. If we
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- Creator:
- Mechoso, C. R., Wood, R., Weller, R., Bretherton, C. S., Clarke, A. D., Coe, H., Fairall, C., Farrar, J. T., Feingold, G., Garreaud, R., Grados, C., McWilliams, J., de Szoeke, Simon P., Yuter, S. E., and Zuidema, P.
- Abstract:
- The present paper describes the Variability of the American Monsoon Systems (VAMOS) Ocean–Cloud–Atmosphere–Land Study (VOCALS), an international research program focused on the improved understanding and modeling of the southeastern Pacific (SEP) climate system on diurnal to interannual time scales. In the framework of the SEP climate, VOCALS has two fundamental...
- Resource Type:
- Article
- Full Text:
- Pacific: The VOCALS Program Mechoso, C. R., Wood, R., Weller, R., Bretherton, C. S., Clarke, A. D., Coe
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- Creator:
- Floberg, J., Goering, M., Wilhere, George, MacDonald, C., Chappell, C., Rumsey, C., Ferdana, Zack, Holt, A., Skidmore, Peter, Horsman, T., Alverson, E., Tanner, C., Bryer, M., Lachetti, Pierre, Harcombe, A., McDonald, B., Cook, T., Summers, M., and Rolph, D.
- Abstract:
- This assessment is intended to help conservation agencies, planners and organizations direct their resources to the most important places for supporting the ecoregion's biodiversity.
- Resource Type:
- Technical Report
- Full Text:
- Willamette Valley–Puget Trough–Georgia Basin E C O R E G I O N A L A S S E S S M E N T MARCH 2004
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- Creator:
- Renaud, Erica N. C., van Bueren, Edith T. Lammerts, Myers, James R., and et al.
- Abstract:
- Organic agriculture requires cultivars that can adapt to organic crop management systems without the use of synthetic pesticides as well as genotypes with improved nutritional value. The aim of this study encompassing 16 experiments was to compare 23 broccoli cultivars for the content of phytochemicals associated with health promotion grown...
- Full Text:
- Conventional Management Systems: Implications in Breeding for Nutrition Erica N. C. Renaud1*, Edith T. Lammerts
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- Creator:
- Johnson, Joel E., Phillips, Stephen C., Torres, Marta E., Piñero, Elena, Rose, Kelly K., and Giosan, L.
- Abstract:
- Total organic carbon (TOC) content of marine sediments represents residual carbon, originally derived from terrestrial and marine sources, which has survived seafloor and shallow subseafloor diagenesis. Ultimately, its preservation below the sulfate reduction zone in marine sediments drives methanogenesis. Within the gas hydrate stability zone (GHSZ), methane production along continental...
- Resource Type:
- Article
- Full Text:
- ., Phillips, S. C., Torres, M. E., Piñero, E., Rose, K. K., & Giosan, L. (2014). Influence of total organic
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- Creator:
- Conover, Charles Tallmadge, 1862-1961, Merriam, C. Hart, Muir, John, 1838-1914, Farrar, Victor J., and United States Geographic Board
- Abstract:
- Gerald W. Williams Collection
- Resource Type:
- Book
- Full Text:
- of the Statement of C. Hart Ierriam, a 3Iember of the [lilted States 4'1(4.2,r:whir Iloard. 1efore
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- Creator:
- Teichert, B. M. A., Johnson, J. E., Solomon, E. A., Giosan, L., Rose, K., Kocherla, M., Connolly, E. C., and Torres, M. E.
- Abstract:
- The mineralogical and stable isotopic composition of authigenic carbonates from the Krishna-Godavari (KG) and Mahanadi Basin provide a deeper insight into the processes inducing carbonate formation in the sediments of the eastern continental margin of India in the Bay of Bengal. Authigenic carbonate cements, (micro) nodules, bioturbation casts and tubes...
- Resource Type:
- Article
- Full Text:
- , *, J.E. Johnson b, E.A. Solomon c, L. Giosan d, K. Rose e, M. Kocherla f, E.C. Connolly b, M.E. Torres g
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- Creator:
- Oliveira, Tiago M., Barros, Ana M. G., Ager, Alan A., and Fernandes, Paulo M.
- Abstract:
- Wildfires pose complex challenges to policymakers and fire agencies. Fuel break networks and area-wide fuel treatments are risk-management options to reduce losses from large fires. Two fuel management scenarios covering 3% of the fire-prone Algarve region of Portugal and differing in the intensity of treatment in 120-m wide fuel breaks...
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- Paulo M. FernandesE AThe Navigator Company, Apartado 55, 2901-861 Setúbal, Portugal. BCentro de
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- Creator:
- Johnson, Shanti Christopher
- Abstract:
- The synergetic interplay between the removal of saturated methyl esters and the addition of deoxygenated fatty acids on depressing the cloud point temperature of biodiesel was investigated in this study. Canola biodiesel was produced in batch as a standard with a cloud point of 1.37 +/- 6.3°C. Saturated methyl esters...
- Resource Type:
- Undergraduate Thesis
- Full Text:
- Shanti C. Johnson, June 3, 2014 I understand that by project will become part of the permanent
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- Creator:
- Oliveira, Tiago M., Barros, Ana M. G., Ager, Alan A., and Fernandes, Paulo M.
- Abstract:
- Wildfires pose complex challenges to policymakers and fire agencies. Fuel break networks and area-wide fuel treatments are risk-management options to reduce losses from large fires. Two fuel management scenarios covering 3% of the fire-prone Algarve region of Portugal and differing in the intensity of treatment in 120-m wide fuel breaks...
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- Company, Forest Protection Department, Apartado 55, 2901-861 Setúbal, Portugal. BForest Research Centre
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- Creator:
- Oregon State University. Dept. of Computer Science, Cull, Paul, 1943-, Holloway, James Lee, and Cavener, Jeffrey Douglas
- Abstract:
- Basic biological information is stored in strings of nucleic acids (DNA, RNA) or amino acids (proteins). Teasing out the meaning of these strings is a central problem of modern biology. Matching and aligning strings brings out their shared characteristics. Although string matching is well-understood in the edit-distance model, biological strings...
- Resource Type:
- Research Paper
- Full Text:
- biologically reasonable strings. Both edit-distance and walking tree methods can locate speci�c genes within a
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- Creator:
- Bettencourt, Genia M.
- Abstract:
- Existing literature on first generation students focuses on the challenges these students encounter in arriving at and persisting within higher education. The area of first generation student involvement, particularly within clubs and organizations on campus, is relatively unknown. In this study, I conducted nine qualitative interviews with first generation students...
- Resource Type:
- Masters Thesis
- Full Text:
- organization, (b) the pursuit of social and cultural capital, and (c) the desire to maximize the college
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- Creator:
- Fernandes, Marcelo Ferreira
- Abstract:
- A method based on fatty acid (FA) analysis is used to profile microbial community structure (MCS). Various extraction protocols are available, which alter the types of FAs extracted from soils. The more time consuming but widely used protocol extracts only FAs from phospholipids (PLFA). This technique is desirable because PLFAs...
- Resource Type:
- Dissertation
- Full Text:
- coconut husk, CH), under two N rates in a Brazilian soil. Microbial biomass-C (MBC), respiration rates
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- Creator:
- Allen, Tony Michael
- Abstract:
- Geotextiles are experiencing increased use in arctic and subarctic construction in separation, reinforcement, erosion control, and drainage applications. The use of geotextiles as capillary cutoff layers to prevent frost heave has been proposed as well. In recognition of the need to investigate properties of geotextiles in cold regions applications, a...
- Resource Type:
- Masters Thesis
- Full Text:
- determined at +22 °C and -12°C by wide strip tensile and static creep tests. Temperature had little effect
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- Creator:
- Harris, Jesse
- Abstract:
- Ocean Wave Energy Converters (WECs) are of interest around the globe as global economies begin to shift their interest to renewable forms of energy. However, the devices are costly to construct–a quality that can be relieved through proper modeling, control, and implementation. This paper presents the numerical and hybrid simulation...
- Resource Type:
- Masters Thesis
- Full Text:
- y W E C W av es pr es su re & ai r de ns ity A ir C ha m be r C on tr ol le r R ot
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- Creator:
- Juneja, Ankita
- Abstract:
- Microalgae has been under careful consideration as a sustainable feedstock for renewable fuel recently due to its year round production with high energy yields per unit area, reduced need for arable land, water treatment benefits with nutrient cycling, and minimal competition with the food industry. Despite of all these advantages,...
- Resource Type:
- Dissertation
- Full Text:
- metabolic network was reconstructed for C. variabilis to offer insight into various metabolic potentials
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- Creator:
- Zerbel, Nicholas
- Abstract:
- Multiagent approaches are well suited to designing autonomous solutions for systems that feature complex interactions between many individuals such as in autonomous traffic systems and multi-robot exploration systems. However, creating autonomous agents that function effectively in these systems is a challenging task. In these complex environments, agents need informative reward...
- Resource Type:
- Dissertation
- Full Text:
- of this dissertation, Counterfactual Behavior Shaping for Multi- Objective Map Elites (C-MOME
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- Creator:
- Thireault, Caitlin
- Abstract:
- Many Gram-negative bacteria use a type III secretion system (TTSS) to establish a relationship with a host. Pathogens can use the secretion system as a way to deliver proteins known as type III effectors (TTEs) into a host cell and block host defense. The variation and redundancy of the type...
- Full Text:
- . fluorescens Pf0-1 (Silby et al., 2009), Escherichia coli DH5 and HB101pir. Pseudomonads were grown at 28°C
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- Creator:
- International Institute of Fisheries Economics & Trade
- Abstract:
- Program for IIFET 2022 Galicia, held at Auditorio Mar de Vigo in Vigo, Galicia, Spain, from 18-22 July 2022.
- Resource Type:
- Conference Proceeding
- Full Text:
- : Joao Ferreira (Room Mar / Sea 2) • 1Challenges and the Prospects of Women Fisher Folk in Makoko
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- Creator:
- Putman, Timothy E.
- Abstract:
- The chlamydiae are a family of obligate intracellular bacteria that have a unique bi-phasic developmental cycle, unique cellular properties, and a unique set of challenges to studying its biology. While genetic manipulation is becoming routine in Chlamydia, there are significant challenges to working with this intracellular parasite. The body of...
- Resource Type:
- Dissertation
- Full Text:
- and postgenomic sequence analysis of C. trachomatis has led to
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- Creator:
- Gerould, Joy-Marie Danielle
- Abstract:
- Recent studies have discovered that salmon, specifically juvenile Coho Salmon, have their olfactory senses inhibited by the presence of low concentrations of copper concentrations at very low concentrations. Much of this copper is deposited on roadways by car brake pads during their use. The copper is carried with stormwater into...
- Resource Type:
- Honors College Thesis
- Full Text:
- isotherms. For the copper concentrations relevant to stormwater remediation H700 (hazelnut shells at 700°C
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- Creator:
- Helliwell, Emily E., Vega‐Arreguín, Julio, Shi, Zi, Bailey, Bryan, Xiao, Shunyuan, Maximova, Siela N., Tyler, Brett M., and Guiltinan, Mark J.
- Abstract:
- The internalization of some oomycete and fungal pathogen effectors into host plant cells has been reported to be blocked by proteins that bind to the effectors' cell entry receptor, phosphatidylinositol-3-phosphate (PI3P). This finding suggested a novel strategy for disease control by engineering plants to secrete PI3P-binding proteins. In this study,...
- Resource Type:
- Article
- Full Text:
- 79% reductions (a) (b) (c) (d) Figure 3 Transient expression of apoplast-targeted PI3P-binding
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- Creator:
- Fox, Samuel E.
- Abstract:
- Transcriptomics and gene expression profiling enables the elucidation of the genetic response of an organism to various environmental cues. Transcriptomics enables the deciphering of differences between two closely related organisms to the same environment and in contrast, enables the elucidation of genetic responses of the same organism to different environmental...
- Resource Type:
- Dissertation
- Full Text:
- microarrays. Abstract approved: Todd C. Mockler Transcriptomics and gene expression
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- Creator:
- Stanley, Lauren, Forrester, Nicole J., Govindarajulu, Rajanikanth, Liston, Aaron, and Ashman, Tia-Lynn
- Abstract:
- Geographic patterns of genetic variation in wild species reflect the interplay of ecological and evolutionary processes. We assessed genetic variation in three genomes across four North American diploid strawberry taxa, with special emphasis on the gynodioecious Fragaria vesca subsp. bracteata (A.Heller) Staudt. Specifically, we sequenced one chloroplast (rpoC2) and two...
- Resource Type:
- Article
- Full Text:
- conditions were 2.5 minutes at 95 ° C, followed by 35 cycles of 95 ° C for 30 seconds, 159 52 ° C for 30
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