Managed honey bees (Apis mellifera) play a vital role in pollinating cultivated crops worldwide. Honey bee colony declines reported in the past two decades have been associated with stressors such as pests and diseases, pesticide exposure, and poor nutrition. In the wake of these colony declines, beekeepers have strived to...
Learning to recognize objects is a fundamental and essential step in human perception and understanding of the world. Accordingly, research of object discovery across diverse modalities plays a pivotal role in the context of computer vision. This field not only contributes significantly to enhancing our understanding of visual information but...
Multiagent approaches are well suited to designing autonomous solutions for systems that feature complex interactions between many individuals such as in autonomous traffic systems and multi-robot exploration systems. However, creating autonomous agents that function effectively in these systems is a challenging task. In these complex environments, agents need informative reward...
The focus of this thesis is to design, characterize, and apply novel computational methods and molecular systems to interrogate heterogeneous human gut microbiome-related phenomena. In Chapter 2, I design, implement, and characterize a method for embedding co-occurrence patterns derived from massive 16s amplicon datasets. I use this method to 1....
The very essence of talk therapy is rooted in the spoken word between counselor and client. A client’s painful traumatic experiences can often serve as a barrier to accessing the traditional consulting room. Despite the high prevalence of trauma and its status as a known risk factor for nearly all...
The climate of the Pacific Northwest is in flux, and existing forest ecosystems are stressed and poised to shift in fundamental ways, with or without human intervention. This dissertation probes the nature of forest responses to environmental change through investigations of morphology and genetics of three species of alder co-occurring...
Magneto- and chemostratigraphic correlation underpins much of our understanding of Earth history, yet typical correlation techniques are neither quantitative nor objective. Within this dissertation, I detail my efforts to develop and apply dynamic programming-based algorithms that accomplish optimal and reproducible stratigraphic alignment. I apply these algorithms to three geologic intervals:...
Chlamydia is an obligate intracellular bacterial pathogen that causes a variety of disease in animals and humans worldwide. Veterinary chlamydial pathogens can lead to chronic infections and serious consequences that result in millions of dollars of losses in animals and resources in the agricultural industry in countries that rear ruminants....
Climate change and other anthropogenic impacts are threatening the existence of millions of species around the globe. On western continental boundaries, the large-scale secondary process of upwelling, which brings low pH, deoxygenated, high nutrient seawater to the surface, is compounded by climate change, that together could drive some species to...